Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Forward (+)

3482338 .. 3484312

Gene Structure 1975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGCTGTTCTTCTTCTTCTTCTACCTCTATCTTGGATTAGTACCAATTAGCTTTCCTAGTTGTGGCTTCTTCCTTGTTGGTGGCCAAGAAACCCCACGTACAGAGTTGGGGGGTTTTTTTTCATCATGTCCATTGAACATTGAGGCTCTCAGAGAATTAATCTTCGAAGGTGCTCCGAAAGTTCTTGATGTCCAGACTGAGTGCCAGTACATCCTCGAAGGAATCCGATTGCTTCGATCGGATTATCTCCGATCCACCGGGTACTTTTCCCCACCTTCCTATACCATAATCTCATGCTGGGATGCATACCAAGCCTTGATCAGCGAGTCGATACCGGATTTAAAAATTGGATCCACTTGTGGGTTTAAGCCCGCACTGCTGTCAGAGACTTGTATGAATATCACAACTCGGTCTGAATTTGAAAGTTTGATTCCCAAATCAGAATTGCAGGTAATTGAGGGTGCTTGTAGCCAGTCTCTAGATGATTATTCCCCTTGTTTTTCGTGTAGGCGCATTTTGTCGAGTCTGAATATGTCTCATTTTGGTAGAGGGTATGATGGGAATGTAGCAGATTGTGATGGATATCCATATATTTATGCTGCAGCTTTGGGTAGTAGGAAGGGACCAATAAATTTGAGTACAGCCAAGTGTTTGTTCTCACTAAACTTCAATTCTTTTGATAGAAAGACTAAAAACAAGCACAGGGTTTTGCTTTGGGCTGTGTTGATAGGAAGTGTGTGTGGATTCACTGTGGCATTTTTGGTGGTTTGGGTTCTTTGGGGGAGGCATAGGAGAAGGAATAAGAAGATGAAGGATCAAAGTGAGACGACGGGGTTTGTTTCTGCCATAGAAATTATAGGTGAGAATACCAGCTTGGCTAGGTTCCCATTTGAGGAACTTAAAAAGGCCACGGAGAATTTCGCCAGGGAGAACATAATTGGGATTGGAGGCTATGGAAATGTGTACAAGGGTACATTGGCAGACGGGTCTGAAGTAGCTTTGAAAAGGTTCAAGAACTTGTCTGCTGCCGGAGATGTAATGTTTGCACATGAGTTGGAGGTTATTGCTAGCATTCGGCATGTGAATCTTGTCGCGGTGAGAGGCTATTGTACTATAAAAGTGCCTAGGCAAGGCCACCAAAGGATAATGGTGTGTGACTTGGTGAACAATGGAAGTCTCTACGAACATCTTTTCGATTCAAGGATGAAGAAGAAACAGCTCAGCTGGCCAATTCGTCAGAAGATTGCACTTGGAATGGCTCGCGGATTGGCTTATTTGCACTATGGAGTGCAGCCTGCTGTAATCCACAGAGATGTCAAAGCAAGCAATGTGCTTCTAGACGAAGAATTCGAGCCAAAACTGGCTGATTTTGGTTTAGCAAAGTTCACACCAGAAGGACAGACACATATGCACACAAGGGTGGCTGGGACATTTGGGTATGTTGCACCGGAGTATGCTTTGTATGGGCAGTTATCCGAAAGAAGCGATGTCTACAGTTTTGGGGTAGCGCTTCTTGAACTTTTGAGTGGAAAGAGAGCAGTTATTGAAGCTAGTGGTACCACAACTTTGCTTTTGGCAGATTGGGCTTGGTCACAAGTGAGGAAAGGCAGACCATTAGATGTTATAGACGAAAGCATTCAGAACTTAAGCTCTAAGGAAGTAATGGAAAACTATGTAATGGTTGCAGTTCTTTCTGCTCATCCGGAATCACATGCGAGGCCAACAATGGACCAAATTGTCAAGATATTGGAAAGGGATTTTCAAGTTCCATCAAACATGGACGCCCCTATTCATAAAATCGATCAGTCGGCAAGCTCTAGTGGTTCGAGTTACATTTCAAGCAATACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

617

Amino Acids

68.69

Weight (kDa)

7.53

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	41 - 192	1.2e-29	SPARK
Pkinase	PF00069	308 - 580	1.9e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	310 - 582	3.7e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1736
Acc36I	ACCTGC	1 cut(s)	439
Acc65I	GGTACC	1 cut(s)	1556
AccB1I	GGYRCC	1 cut(s)	1556
AccI	GTMKAC	1 cut(s)	1491
AccII	CGCG	2 cut(s)	1094, 1263
AccIII	TCCGGA	1 cut(s)	1702
AciI	CCGC	3 cut(s)	372, 1094, 1263
AclWI	GGATC	4 cut(s)	246, 345, 358, 822
AcoI	YGGCCR	2 cut(s)	82, 1226
AcsI	RAATTY	4 cut(s)	416, 631, 916, 1346
AcuI	CTGAAG	1 cut(s)	1011
AcyI	GRCGYC	1 cut(s)	1782
AfaI	GTAC	9 cut(s)	42, 100, 209, 263, 640, 965, 973, 1111, 1558
AfeI	AGCGCT	1 cut(s)	1509
AfiI	CCNNNNNNNGG	4 cut(s)	62, 360, 892, 1130
AflII	CTTAAG	1 cut(s)	1645
AjnI	CCWGG	1 cut(s)	923
AjuI	GAANNNNNNNTTGG	4 cut(s)	638, 670, 857, 889
AleI	CACNNNNGTG	1 cut(s)	1418
AluBI	AGCT	9 cut(s)	51, 605, 873, 998, 1219, 1224, 1550, 1650, 1815
AluI	AGCT	9 cut(s)	51, 605, 873, 998, 1219, 1224, 1550, 1650, 1815
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	5 cut(s)	380, 480, 540, 818, 1181
AlwI	GGATC	4 cut(s)	246, 345, 358, 822
Aor13HI	TCCGGA	1 cut(s)	1702
Aor51HI	AGCGCT	1 cut(s)	1509
AoxI	GGCC	5 cut(s)	82, 906, 1132, 1226, 1718
ApeKI	GCWGC	4 cut(s)	599, 602, 1025, 1291
ApoI	RAATTY	4 cut(s)	416, 631, 916, 1346
ArsI	GACNNNNNNTTYG	2 cut(s)	1331, 1363
AseI	ATTAAT	1 cut(s)	158
Asp700I	GAANNNNTTC	2 cut(s)	1007, 1635
Asp718I	GGTACC	1 cut(s)	1556
AspA2I	CCTAGG	1 cut(s)	1124
AspLEI	GCGC	2 cut(s)	513, 1510
AspS9I	GGNCC	2 cut(s)	623, 1729
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	872, 1108, 1174
AsuII	TTCGAA	1 cut(s)	165
AsuNHI	GCTAGC	1 cut(s)	1067
AvaII	GGWCC	2 cut(s)	623, 1729
AvrII	CCTAGG	1 cut(s)	1124
BalI	TGGCCA	2 cut(s)	84, 1228
BamHI	GGATCC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	1556
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	586, 614, 1012, 1303
BccI	CCATC	3 cut(s)	551, 572, 1777
BciT130I	CCWGG	1 cut(s)	925
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	5 cut(s)	380, 480, 540, 818, 1181
BfaI	CTAG	8 cut(s)	57, 479, 879, 1068, 1125, 1337, 1551, 1818
BfmI	CTRYAG	2 cut(s)	600, 1492
BfoI	RGCGCY	1 cut(s)	1511
BfrI	CTTAAG	1 cut(s)	1645
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	4 cut(s)	600, 603, 1026, 1292
BlnI	CCTAGG	1 cut(s)	1124
BlpI	GCTNAGC	1 cut(s)	1220
BlsI	GCNGC	4 cut(s)	601, 604, 1027, 1293
Bme1390I	CCNGG	2 cut(s)	259, 925
Bme18I	GGWCC	2 cut(s)	623, 1729
BmgT120I	GGNCC	2 cut(s)	623, 1729
BmiI	GGNNCC	4 cut(s)	352, 624, 884, 1558
BmrFI	CCNGG	2 cut(s)	259, 925
BmsI	GCATC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	1071
Bpu1102I	GCTNAGC	1 cut(s)	1220
Bpu14I	TTCGAA	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	259
Bsa29I	ATCGAT	1 cut(s)	1800
BsaAI	YACGTR	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	1782
BsaJI	CCNNGG	3 cut(s)	909, 924, 1124
BsaWI	WCCGGW	3 cut(s)	334, 1447, 1702
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 360, 892, 1130
Bse1I	ACTGG	4 cut(s)	205, 472, 1365, 1852
Bse3DI	GCAATG	1 cut(s)	1333
Bse8I	GATNNNNATC	1 cut(s)	582
BseAI	TCCGGA	1 cut(s)	1702
BseBI	CCWGG	1 cut(s)	925
BseCI	ATCGAT	1 cut(s)	1800
BseDI	CCNNGG	3 cut(s)	909, 924, 1124
BseGI	GGATG	4 cut(s)	210, 307, 1209, 1699
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	4 cut(s)	62, 360, 892, 1130
BseMI	GCAATG	1 cut(s)	1333
BseMII	CTCAG	3 cut(s)	163, 189, 1234
BseNI	ACTGG	4 cut(s)	205, 472, 1365, 1852
BseXI	GCAGC	4 cut(s)	586, 614, 1012, 1303
BseYI	CCCAGC	2 cut(s)	297, 1424
BsgI	GTGCAG	1 cut(s)	1310
Bsh1236I	CGCG	2 cut(s)	1094, 1263
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	5 cut(s)	84, 908, 1134, 1228, 1720
BshNI	GGYRCC	1 cut(s)	1556
BshVI	ATCGAT	1 cut(s)	1800
BsiEI	CGRYCG	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	5 cut(s)	258, 335, 1029, 1448, 1703
BslFI	GGGAC	2 cut(s)	636, 1441
BslI	CCNNNNNNNGG	4 cut(s)	62, 360, 892, 1130
BsmAI	GTCTC	5 cut(s)	380, 480, 540, 818, 1181
BsmBI	CGTCTC	1 cut(s)	818
BsmFI	GGGAC	2 cut(s)	636, 1441
BsmI	GAATGC	2 cut(s)	1071, 1635
BsnI	GGCC	5 cut(s)	84, 908, 1134, 1228, 1720
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp13I	TCCGGA	1 cut(s)	1702
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
Bsp1720I	GCTNAGC	1 cut(s)	1220
BspACI	CCGC	3 cut(s)	372, 1094, 1263
BspANI	GGCC	5 cut(s)	84, 908, 1134, 1228, 1720
BspCNI	CTCAG	3 cut(s)	162, 190, 1233
BspDI	ATCGAT	1 cut(s)	1800
BspEI	TCCGGA	1 cut(s)	1702
BspFNI	CGCG	2 cut(s)	1094, 1263
BspLI	GGNNCC	4 cut(s)	352, 624, 884, 1558
BspMAI	CTGCAG	1 cut(s)	604
BspMI	ACCTGC	1 cut(s)	439
BspOI	GCTAGC	1 cut(s)	1071
BspPI	GGATC	4 cut(s)	246, 345, 358, 822
BspT104I	TTCGAA	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	1556
BspTI	CTTAAG	1 cut(s)	1645
BsrDI	GCAATG	1 cut(s)	1333
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	4 cut(s)	205, 472, 1365, 1852
BssECI	CCNNGG	3 cut(s)	909, 924, 1124
BssMI	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
BssNI	GRCGYC	1 cut(s)	1782
BssT1I	CCWWGG	1 cut(s)	1124
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	2 cut(s)	751, 1496
BstACI	GRCGYC	1 cut(s)	1782
BstAFI	CTTAAG	1 cut(s)	1645
BstAUI	TGTACA	1 cut(s)	963
BstBAI	YACGTR	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	7 cut(s)	372, 1069, 1226, 1261, 1296, 1324, 1813
BstDEI	CTNAG	4 cut(s)	149, 198, 1220, 1653
BstDSI	CCRYGG	1 cut(s)	909
BstENI	CCTNNNNNAGG	1 cut(s)	1128
BstF5I	GGATG	4 cut(s)	210, 307, 1209, 1699
BstFNI	CGCG	2 cut(s)	1094, 1263
BstH2I	RGCGCY	1 cut(s)	1511
BstHHI	GCGC	2 cut(s)	513, 1510
BstKTI	GATC	6 cut(s)	239, 254, 321, 353, 817, 1804
BstMAI	GTCTC	5 cut(s)	380, 480, 540, 818, 1181
BstMBI	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 376, 1225, 1583
BstNI	CCWGG	1 cut(s)	925
BstNSI	RCATGY	2 cut(s)	1082, 1715
BstSCI	CCNGG	2 cut(s)	257, 923
BstSFI	CTRYAG	2 cut(s)	600, 1492
BstUI	CGCG	2 cut(s)	1094, 1263
BstV1I	GCAGC	4 cut(s)	586, 614, 1012, 1303
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
Bsu15I	ATCGAT	1 cut(s)	1800
BsuRI	GGCC	5 cut(s)	84, 908, 1134, 1228, 1720
BsuTUI	ATCGAT	1 cut(s)	1800
BtgI	CCRYGG	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	1500
BtsCI	GGATG	4 cut(s)	210, 307, 1209, 1699
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	374, 747
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	7 cut(s)	372, 1069, 1226, 1261, 1296, 1324, 1813
CfoI	GCGC	2 cut(s)	513, 1510
Cfr13I	GGNCC	2 cut(s)	623, 1729
ClaI	ATCGAT	1 cut(s)	1800
CseI	GACGC	1 cut(s)	1790
Csp6I	GTAC	9 cut(s)	41, 99, 208, 262, 639, 964, 972, 1110, 1557
CviAII	CATG	6 cut(s)	126, 294, 1049, 1079, 1712, 1777
CviQI	GTAC	9 cut(s)	41, 99, 208, 262, 639, 964, 972, 1110, 1557
DdeI	CTNAG	4 cut(s)	149, 198, 1220, 1653
DpnI	GATC	6 cut(s)	238, 253, 320, 352, 816, 1803
DpnII	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
DraI	TTTAAA	1 cut(s)	342
DrdI	GACNNNNNNGTC	1 cut(s)	1736
DseDI	GACNNNNNNGTC	1 cut(s)	1736
EaeI	YGGCCR	2 cut(s)	82, 1226
Eco130I	CCWWGG	1 cut(s)	1124
Eco32I	GATATC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	623, 1729
Eco47III	AGCGCT	1 cut(s)	1509
Eco57I	CTGAAG	1 cut(s)	1011
EcoNI	CCTNNNNNAGG	1 cut(s)	1128
EcoRI	GAATTC	1 cut(s)	1346
EcoRII	CCWGG	1 cut(s)	923
EcoRV	GATATC	1 cut(s)	584
EcoT14I	CCWWGG	1 cut(s)	1124
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	1124
Esp3I	CGTCTC	1 cut(s)	818
FaeI	CATG	6 cut(s)	129, 297, 1052, 1082, 1715, 1780
FaqI	GGGAC	2 cut(s)	636, 1441
FatI	CATG	6 cut(s)	125, 293, 1048, 1078, 1711, 1776
FauI	CCCGC	1 cut(s)	379
FauNDI	CATATG	1 cut(s)	1407
FbaI	TGATCA	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	1491
Fnu4HI	GCNGC	4 cut(s)	600, 603, 1026, 1292
FokI	GGATG	4 cut(s)	197, 314, 1216, 1686
Fsp4HI	GCNGC	4 cut(s)	600, 603, 1026, 1292
FspBI	CTAG	8 cut(s)	57, 479, 879, 1068, 1125, 1337, 1551, 1818
GlaI	GCGC	2 cut(s)	512, 1509
GluI	GCNGC	4 cut(s)	600, 603, 1026, 1292
GsaI	CCCAGC	2 cut(s)	301, 1428
HaeII	RGCGCY	1 cut(s)	1511
HaeIII	GGCC	5 cut(s)	84, 908, 1134, 1228, 1720
HapII	CCGG	5 cut(s)	258, 335, 1029, 1448, 1703
HgaI	GACGC	1 cut(s)	1790
HhaI	GCGC	2 cut(s)	513, 1510
Hin1I	GRCGYC	1 cut(s)	1782
Hin1II	CATG	6 cut(s)	129, 297, 1052, 1082, 1715, 1780
Hin6I	GCGC	2 cut(s)	511, 1508
HinP1I	GCGC	2 cut(s)	511, 1508
HinfI	GANTC	8 cut(s)	222, 326, 430, 523, 744, 1084, 1196, 1706
HpaII	CCGG	5 cut(s)	258, 335, 1029, 1448, 1703
HphI	GGTGA	3 cut(s)	872, 1108, 1174
Hpy166II	GTNNAC	4 cut(s)	964, 1165, 1386, 1492
Hpy188III	TCNNGA	8 cut(s)	185, 193, 479, 1012, 1337, 1514, 1703, 1741
Hpy8I	GTNNAC	4 cut(s)	964, 1165, 1386, 1492
Hpy99I	CGWCG	1 cut(s)	832
HpyAV	CCTTC	7 cut(s)	161, 212, 285, 613, 789, 805, 1388
HpyCH4III	ACNGT	2 cut(s)	751, 1496
HpyCH4IV	ACGT	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 376, 1225, 1583
HpyF3I	CTNAG	4 cut(s)	149, 198, 1220, 1653
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	1782
Hsp92II	CATG	6 cut(s)	129, 297, 1052, 1082, 1715, 1780
HspAI	GCGC	2 cut(s)	511, 1508
Kpn2I	TCCGGA	1 cut(s)	1702
KpnI	GGTACC	1 cut(s)	1560
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	4 cut(s)	586, 614, 1012, 1303
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	8 cut(s)	57, 479, 879, 1068, 1125, 1337, 1551, 1818
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	3 cut(s)	1154, 1590, 1829
MalI	GATC	6 cut(s)	238, 253, 320, 352, 816, 1803
MboI	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	175
MlsI	TGGCCA	2 cut(s)	84, 1228
MluNI	TGGCCA	2 cut(s)	84, 1228
MlyI	GAGTC	2 cut(s)	335, 532
MmeI	TCCRAC	1 cut(s)	1035
Mox20I	TGGCCA	2 cut(s)	84, 1228
Mph1103I	ATGCAT	1 cut(s)	307
MroI	TCCGGA	1 cut(s)	1702
MroXI	GAANNNNTTC	2 cut(s)	1007, 1635
MscI	TGGCCA	2 cut(s)	84, 1228
MseI	TTAA	5 cut(s)	158, 341, 366, 900, 1646
MslI	CAYNNNNRTG	2 cut(s)	1311, 1418
Msp20I	TGGCCA	2 cut(s)	84, 1228
MspA1I	CMGCKG	1 cut(s)	1224
MspCI	CTTAAG	1 cut(s)	1645
MspI	CCGG	5 cut(s)	258, 335, 1029, 1448, 1703
MspR9I	CCNGG	2 cut(s)	259, 925
Mva1269I	GAATGC	2 cut(s)	1071, 1635
MvaI	CCWGG	1 cut(s)	925
MvnI	CGCG	2 cut(s)	1094, 1263
MwoI	GCNNNNNNNGC	4 cut(s)	311, 376, 1225, 1583
NciI	CCSGG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	1407
NdeII	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
NheI	GCTAGC	1 cut(s)	1067
NlaIII	CATG	6 cut(s)	129, 297, 1052, 1082, 1715, 1780
NlaIV	GGNNCC	4 cut(s)	352, 624, 884, 1558
NmuCI	GTSAC	2 cut(s)	1154, 1590
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	2 cut(s)	1082, 1715
NspV	TTCGAA	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	1418
PcsI	WCGNNNNNNNCGW	1 cut(s)	1347
PctI	GAATGC	2 cut(s)	1071, 1635
PdmI	GAANNNNTTC	2 cut(s)	1007, 1635
PfeI	GAWTC	6 cut(s)	222, 430, 744, 1084, 1196, 1706
PkrI	GCNGC	4 cut(s)	601, 604, 1027, 1293
Ple19I	CGATCG	1 cut(s)	239
PleI	GAGTC	2 cut(s)	334, 531
PpsI	GAGTC	2 cut(s)	334, 531
Ppu21I	YACGTR	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	923
PspFI	CCCAGC	2 cut(s)	297, 1424
PspGI	CCWGG	1 cut(s)	923
PspN4I	GGNNCC	4 cut(s)	352, 624, 884, 1558
PspPI	GGNCC	2 cut(s)	623, 1729
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	1224
RsaI	GTAC	9 cut(s)	42, 100, 209, 263, 640, 965, 973, 1111, 1558
RsaNI	GTAC	9 cut(s)	41, 99, 208, 262, 639, 964, 972, 1110, 1557
RseI	CAYNNNNRTG	2 cut(s)	1311, 1418
SaqAI	TTAA	5 cut(s)	158, 341, 366, 900, 1646
SatI	GCNGC	4 cut(s)	600, 603, 1026, 1292
Sau3AI	GATC	6 cut(s)	236, 251, 318, 350, 814, 1801
Sau96I	GGNCC	2 cut(s)	623, 1729
SchI	GAGTC	2 cut(s)	335, 532
ScrFI	CCNGG	2 cut(s)	259, 925
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	2 cut(s)	600, 1492
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	2 cut(s)	623, 1729
SmiMI	CAYNNNNRTG	2 cut(s)	1311, 1418
SmlI	CTYRAG	1 cut(s)	1645
SmoI	CTYRAG	1 cut(s)	1645
SsiI	CCGC	3 cut(s)	372, 1094, 1263
SspMI	CTAG	8 cut(s)	57, 479, 879, 1068, 1125, 1337, 1551, 1818
StyD4I	CCNGG	2 cut(s)	257, 923
StyI	CCWWGG	1 cut(s)	1124
TaaI	ACNGT	2 cut(s)	751, 1496
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	9 cut(s)	165, 216, 235, 329, 521, 1194, 1350, 1800, 1826
TaqII	GACCGA	1 cut(s)	399
TatI	WGTACW	4 cut(s)	207, 638, 963, 1109
TfiI	GAWTC	6 cut(s)	222, 430, 744, 1084, 1196, 1706
Tru1I	TTAA	5 cut(s)	158, 341, 366, 900, 1646
Tru9I	TTAA	5 cut(s)	158, 341, 366, 900, 1646
TscAI	CASTG	2 cut(s)	381, 754
TseFI	GTSAC	2 cut(s)	1154, 1590
TseI	GCWGC	4 cut(s)	599, 602, 1025, 1291
Tsp45I	GTSAC	2 cut(s)	1154, 1590
TspDTI	ATGAA	5 cut(s)	111, 410, 824, 1220, 1781
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	2 cut(s)	381, 754
Vha464I	CTTAAG	1 cut(s)	1645
VpaK11BI	GGWCC	2 cut(s)	623, 1729
VspI	ATTAAT	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	1128
XapI	RAATTY	4 cut(s)	416, 631, 916, 1346
XbaI	TCTAGA	2 cut(s)	478, 1336
XceI	RCATGY	2 cut(s)	1082, 1715
XmaJI	CCTAGG	1 cut(s)	1124
XmiI	GTMKAC	1 cut(s)	1491
XmnI	GAANNNNTTC	2 cut(s)	1007, 1635
XspI	CTAG	8 cut(s)	57, 479, 879, 1068, 1125, 1337, 1551, 1818
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.