Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Reverse (-)

1272894 .. 1275717

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAGTCACAAGAATCAACCTTTCCAGGTGACAAGAGGCCTGGAACCACTGATGTTGAGAACAAGCCTAACAAGAAGGCTAAAACTCGGAAAGGCTTAAACTTTAGAGAGATAATGGCCTTTCCTCATAATGATATCACTGCCATCAGTGGGAAAGTACAGTCTTGGATAAGGCTTTACAAAAATGATCATCGTGATGCTGCTCGGGTTGAACTCTTCAATCTCATACTTGAGGCATGTGGACTGGAATTTCCTAAGATTAATGACAAAGGGCTGGTCAAGTGGTATCCCATCAACAAGAAGAATTTGCAAAGATATCATATTGAGGATGTTCGTTGTGATATGATCCGGTTCATTGAAAGTGGGGTGGTTAGAGACTATGACACCCTACAAAATGAGTTCCCACATATCAAGGTTCATCTCCAAAATTTTTGCCATAATTTGGTCATGTGGTCTCACAATGAGCCACTTTTTTTTGACACCATGAAGGACTGTCTGGATTGTTTTACCACATTTTCATGCCATCTCCCAAGCGGATACAACAAAACTGCTATTTGGATGGCTCTCCAAACAGTCAGTTCTTTGTTAGCTATAGCCACAAATCTACGTGGTAAAGGGAAGATTGATCAAGACTTGAATGATTTGGAACAGATGGTGATTCAGTATTATCAGGGGTTCTTTCTTCGGGTCTATAAAGACAATGACCAGGAAATTCGGCGCTCATGCTTAAAGGAATTAAAGATGTGGACCAGAACATACCCATCGATCTTCTTGAAGCAAGCATACCAGGAATGCCTTCAAGATAGCCAAAAATTAGCAGATCAGGATGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007127 GO:0007135 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0045144 GO:0048285 GO:0051177 GO:0051276 GO:0051316 GO:0051321 GO:0051455 GO:0051754 GO:0061982 GO:0061983 GO:0070192 GO:0070601 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

STAG

Protein Analysis

278

Amino Acids

32.63

Weight (kDa)

8.04

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCD	PF21581	232 - 262	6e-06	Stromalin conservative domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	442
AciI	CCGC	1 cut(s)	534
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	4 cut(s)	248, 304, 427, 711
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	150, 442
AgsI	TTSAA	6 cut(s)	212, 220, 359, 637, 775, 800
AjnI	CCWGG	4 cut(s)	25, 40, 705, 786
AluBI	AGCT	1 cut(s)	590
AluI	AGCT	1 cut(s)	590
Alw26I	GTCTC	2 cut(s)	369, 459
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	2 cut(s)	38, 117
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	4 cut(s)	248, 304, 427, 711
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	747
AsuHPI	GGTGA	2 cut(s)	41, 667
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	747
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	6 cut(s)	152, 299, 531, 553, 646, 769
BciT130I	CCWGG	4 cut(s)	27, 42, 707, 788
BciVI	GTATCC	2 cut(s)	297, 530
BclI	TGATCA	2 cut(s)	187, 625
BcoDI	GTCTC	2 cut(s)	369, 459
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	721
BfuI	GTATCC	2 cut(s)	297, 530
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	4 cut(s)	27, 42, 707, 788
Bme18I	GGWCC	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	747
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	4 cut(s)	27, 42, 707, 788
BmsI	GCATC	2 cut(s)	187, 817
BpuEI	CTTGAG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 442
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	4 cut(s)	27, 42, 707, 788
BseCI	ATCGAT	1 cut(s)	764
BseGI	GGATG	3 cut(s)	334, 564, 832
BseLI	CCNNNNNNNGG	2 cut(s)	150, 442
BseNI	ACTGG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	40, 119
BshVI	ATCGAT	1 cut(s)	764
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	150, 442
BsmAI	GTCTC	2 cut(s)	369, 459
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	2 cut(s)	40, 119
Bso31I	GGTCTC	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	5 cut(s)	187, 345, 625, 765, 820
BspACI	CCGC	1 cut(s)	534
BspANI	GGCC	2 cut(s)	40, 119
BspDI	ATCGAT	1 cut(s)	764
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	249
BssMI	GATC	5 cut(s)	187, 345, 625, 765, 820
Bst2UI	CCWGG	4 cut(s)	27, 42, 707, 788
Bst4CI	ACNGT	3 cut(s)	162, 494, 574
Bst6I	CTCTTC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	334, 564, 832
BstH2I	RGCGCY	1 cut(s)	721
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	5 cut(s)	190, 348, 628, 768, 823
BstMAI	GTCTC	2 cut(s)	369, 459
BstMBI	GATC	5 cut(s)	187, 345, 625, 765, 820
BstNI	CCWGG	4 cut(s)	27, 42, 707, 788
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	4 cut(s)	25, 40, 705, 786
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	764
BsuI	GTATCC	2 cut(s)	297, 530
BsuRI	GGCC	2 cut(s)	40, 119
BsuTUI	ATCGAT	1 cut(s)	764
BtsCI	GGATG	3 cut(s)	334, 564, 832
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	48, 138, 154
Cac8I	GCNNGC	1 cut(s)	780
CfoI	GCGC	1 cut(s)	720
Cfr13I	GGNCC	1 cut(s)	747
ClaI	ATCGAT	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	5 cut(s)	237, 448, 484, 519, 723
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	5 cut(s)	189, 347, 627, 767, 822
DpnII	GATC	5 cut(s)	187, 345, 625, 765, 820
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	459
Eco32I	GATATC	2 cut(s)	136, 317
Eco47I	GGWCC	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	4 cut(s)	25, 40, 705, 786
EcoRV	GATATC	2 cut(s)	136, 317
FaeI	CATG	5 cut(s)	240, 451, 487, 522, 726
FatI	CATG	5 cut(s)	236, 447, 483, 518, 722
FbaI	TGATCA	2 cut(s)	187, 625
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	341, 571
Fsp4HI	GCNGC	1 cut(s)	201
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	721
HaeIII	GGCC	2 cut(s)	40, 119
HapII	CCGG	1 cut(s)	349
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	5 cut(s)	240, 451, 487, 522, 726
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HinfI	GANTC	3 cut(s)	5, 14, 658
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	41, 667
Hpy166II	GTNNAC	2 cut(s)	242, 747
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	6 cut(s)	194, 497, 629, 772, 800, 824
Hpy8I	GTNNAC	2 cut(s)	242, 747
HpyAV	CCTTC	3 cut(s)	70, 481, 806
HpyCH4III	ACNGT	3 cut(s)	162, 494, 574
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	5 cut(s)	240, 451, 487, 522, 726
HspAI	GCGC	1 cut(s)	718
Ksp22I	TGATCA	2 cut(s)	187, 625
Kzo9I	GATC	5 cut(s)	187, 345, 625, 765, 820
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	187, 817
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	2 cut(s)	6, 29
MalI	GATC	5 cut(s)	189, 347, 627, 767, 822
MboI	GATC	5 cut(s)	187, 345, 625, 765, 820
MboII	GAAGA	5 cut(s)	208, 313, 631, 674, 760
MluCI	AATT	8 cut(s)	248, 304, 427, 439, 711, 734, 812, 832
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	4 cut(s)	30, 135, 226, 319
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	4 cut(s)	98, 261, 728, 737
MslI	CAYNNNNRTG	2 cut(s)	195, 517
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	4 cut(s)	27, 42, 707, 788
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	4 cut(s)	27, 42, 707, 788
NdeII	GATC	5 cut(s)	187, 345, 625, 765, 820
NlaIII	CATG	5 cut(s)	240, 451, 487, 522, 726
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	6, 29
NspI	RCATGY	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	14, 658
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	4 cut(s)	25, 40, 705, 786
PspGI	CCWGG	4 cut(s)	25, 40, 705, 786
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	747
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	2 cut(s)	195, 517
SaqAI	TTAA	4 cut(s)	98, 261, 728, 737
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	5 cut(s)	187, 345, 625, 765, 820
Sau96I	GGNCC	1 cut(s)	747
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	27, 42, 707, 788
SetI	ASST	5 cut(s)	23, 31, 417, 592, 610
SfaNI	GCATC	2 cut(s)	187, 817
SfcI	CTRYAG	1 cut(s)	591
SinI	GGWCC	1 cut(s)	747
SmiMI	CAYNNNNRTG	2 cut(s)	195, 517
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	8 cut(s)	248, 304, 427, 439, 711, 734, 812, 832
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	4 cut(s)	25, 40, 705, 786
TaaI	ACNGT	3 cut(s)	162, 494, 574
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	1 cut(s)	764
TasI	AATT	8 cut(s)	248, 304, 427, 439, 711, 734, 812, 832
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	14, 658
Tru1I	TTAA	4 cut(s)	98, 261, 728, 737
Tru9I	TTAA	4 cut(s)	98, 261, 728, 737
TscAI	CASTG	3 cut(s)	55, 145, 154
TseFI	GTSAC	2 cut(s)	6, 29
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	2 cut(s)	6, 29
TspDTI	ATGAA	4 cut(s)	343, 407, 500, 507
TspRI	CASTG	3 cut(s)	55, 145, 154
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	747
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	4 cut(s)	248, 304, 427, 711
XceI	RCATGY	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.