Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

35768819 .. 35772937

Gene Structure 4119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0223800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGATTTGGAGCACTAAGGTCCTTGTGCCGATCCCTATCACGAACCCTAATATCTCGCACCCCAACTTGCTCCGTAACGTCATTTGCTGCCAACTCTGTGCACCTGAAACCTGAGCTCCGCTTTGTTTCCGGTGGCCAGGCTCCATGGTTTCTTCCAATTTTGAACCATTTTCACAGCTTGACGGACACTCGTTTCCCAAAACGGCGACCCATGGATAAGCCTCGTCGAAAAAGGTCCAGCATAAGACCTCCTGGACCATATGCTGGGGTTCAGTATGTTCCTGGTGAACCAATAGTGCCTAGCAGACCCAATGAAGGAAGTGTGAAGAGGAGGAATGAGAAGAAGCGCATGAGGCAGCGTCGTGCATTTATTTTGTCAGAGAAAAAGAAGAGGAAAGCTCTGGTGCAGGAGGCCAAAAGAAAGAAAAACATTAAGAGAATTGAGAATAAAATGGCTGCTGTTGCAAGAGACAGAGCGTGGGCTCAGAGACTGGCTGAGCTGCAGCAGTTGGAGGAAGAGAAGAAGAAATCCATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

180

Amino Acids

20.77

Weight (kDa)

11.55

Isoelectric Point (pI)

77.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	266
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	266, 317
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	3 cut(s)	138, 253, 283
AluBI	AGCT	4 cut(s)	118, 180, 401, 502
AluI	AGCT	4 cut(s)	118, 180, 401, 502
Alw21I	GWGCWC	3 cut(s)	16, 105, 120
Alw26I	GTCTC	2 cut(s)	465, 484
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	2 cut(s)	136, 414
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	5 cut(s)	89, 358, 458, 502, 505
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	21, 237, 257
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	21, 237, 257
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	138
BanII	GRGCYC	2 cut(s)	120, 487
Bbv12I	GWGCWC	3 cut(s)	16, 105, 120
BbvI	GCAGC	5 cut(s)	76, 370, 445, 489, 517
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	3 cut(s)	140, 255, 285
BcoDI	GTCTC	2 cut(s)	465, 484
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	503
BisI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	5 cut(s)	91, 360, 460, 504, 507
Bme1390I	CCNGG	3 cut(s)	140, 255, 285
Bme18I	GGWCC	3 cut(s)	21, 237, 257
BmgT120I	GGNCC	3 cut(s)	21, 237, 257
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	140, 255, 285
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	146, 213, 534
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 317
Bse1I	ACTGG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	37
BseBI	CCWGG	3 cut(s)	140, 255, 285
BseDI	CCNNGG	3 cut(s)	146, 213, 534
BseJI	GATNNNNATC	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	266, 317
BseMII	CTCAG	3 cut(s)	105, 489, 500
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	5 cut(s)	76, 370, 445, 489, 517
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	138, 416
BsiHKAI	GWGCWC	3 cut(s)	16, 105, 120
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	266, 317
BsmAI	GTCTC	2 cut(s)	465, 484
BsnI	GGCC	2 cut(s)	138, 416
Bsp1286I	GDGCHC	4 cut(s)	16, 105, 120, 487
Bsp143I	GATC	1 cut(s)	32
Bsp1720I	GCTNAGC	1 cut(s)	498
Bsp19I	CCATGG	3 cut(s)	146, 213, 534
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	138, 416
BspCNI	CTCAG	3 cut(s)	106, 490, 499
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	507
BspPI	GGATC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	3 cut(s)	146, 213, 534
BssMI	GATC	1 cut(s)	32
BssT1I	CCWWGG	3 cut(s)	146, 213, 534
Bst2UI	CCWGG	3 cut(s)	140, 255, 285
Bst6I	CTCTTC	3 cut(s)	323, 386, 513
BstDEI	CTNAG	4 cut(s)	17, 114, 486, 498
BstDSI	CCRYGG	3 cut(s)	146, 213, 534
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	2 cut(s)	465, 484
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 464
BstNI	CCWGG	3 cut(s)	140, 255, 285
BstSCI	CCNGG	3 cut(s)	138, 253, 283
BstSFI	CTRYAG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	5 cut(s)	76, 370, 445, 489, 517
BsuRI	GGCC	2 cut(s)	138, 416
BtgI	CCRYGG	3 cut(s)	146, 213, 534
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	21, 237, 257
CseI	GACGC	1 cut(s)	350
CviAII	CATG	4 cut(s)	147, 214, 352, 535
DdeI	CTNAG	4 cut(s)	17, 114, 486, 498
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	323, 386, 513
EarI	CTCTTC	3 cut(s)	323, 386, 513
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	146, 213, 534
Eco24I	GRGCYC	2 cut(s)	120, 487
Eco47I	GGWCC	3 cut(s)	21, 237, 257
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	3 cut(s)	138, 253, 283
EcoT14I	CCWWGG	3 cut(s)	146, 213, 534
EcoT38I	GRGCYC	2 cut(s)	120, 487
ErhI	CCWWGG	3 cut(s)	146, 213, 534
FaeI	CATG	4 cut(s)	150, 217, 355, 538
FaiI	YATR	8 cut(s)	148, 215, 245, 262, 264, 279, 353, 536
FatI	CATG	4 cut(s)	146, 213, 351, 534
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
FriOI	GRGCYC	2 cut(s)	120, 487
Fsp4HI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	138, 416
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	150, 217, 355, 538
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	103, 290
Hpy188I	TCNGA	2 cut(s)	382, 489
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	2 cut(s)	103, 290
Hpy99I	CGWCG	2 cut(s)	231, 366
HpyAV	CCTTC	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	103, 368, 409, 467, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 464
HpyF3I	CTNAG	4 cut(s)	17, 114, 486, 498
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	150, 217, 355, 538
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	11, 77, 123, 148
Lsp1109I	GCAGC	5 cut(s)	76, 370, 445, 489, 517
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	7 cut(s)	146, 340, 355, 403, 530, 535, 538
MhlI	GDGCHC	4 cut(s)	16, 105, 120, 487
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	2 cut(s)	159, 441
MluNI	TGGCCA	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	8 cut(s)	234, 261, 324, 327, 348, 387, 406, 508
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	2 cut(s)	435, 541
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	140, 255, 285
MvaI	CCWGG	3 cut(s)	140, 255, 285
MwoI	GCNNNNNNNGC	2 cut(s)	355, 464
NcoI	CCATGG	3 cut(s)	146, 213, 534
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	4 cut(s)	150, 217, 355, 538
NlaIV	GGNNCC	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	91, 360, 460, 504, 507
PpuMI	RGGWCCY	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	138, 253, 283
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	3 cut(s)	138, 253, 283
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	21, 237, 257
PspPPI	RGGWCCY	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	435, 541
SatI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	3 cut(s)	21, 237, 257
ScrFI	CCNGG	3 cut(s)	140, 255, 285
SduI	GDGCHC	4 cut(s)	16, 105, 120, 487
SfcI	CTRYAG	1 cut(s)	503
SinI	GGWCC	3 cut(s)	21, 237, 257
Sse9I	AATT	2 cut(s)	159, 441
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	138, 253, 283
StyI	CCWWGG	3 cut(s)	146, 213, 534
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	229
TasI	AATT	2 cut(s)	159, 441
Tru1I	TTAA	2 cut(s)	435, 541
Tru9I	TTAA	2 cut(s)	435, 541
TseI	GCWGC	5 cut(s)	89, 358, 458, 502, 505
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	2 cut(s)	64, 200
Van91I	CCANNNNNTGG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	3 cut(s)	21, 237, 257
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.