Rh7BG460400
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
54569319 .. 54570198
880 bp
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UTR
Exon/CDS
Intron
Rh7BG460400.1

Sequence Viewer

Length: 414 bp
ATGCAGTATTCAATGTTTGGCTCCCTTTTGACATTTGGTGCAATGATTGGTGCTATCACGATTGGTCCCATCGCTGATTTCATTGGTCGAAAAGGGGCCATGAGACTGTCCAGTGCTTTTTGTGTTGCAGGTTGGCTAGCTATATACTTTGCTGAGAGTATTTGGCCTCTTGACATTGGGAGGCTGGCAAATGGTTATGGAATGGGAGCCTTTTCTTATGTGGTACCTGTTTTCATAGCTGAAATTGCTCCAAAAAATCTTCGAGAAAGGCTAACTGCTGCAAATCAGTTAATGATCTGTGCTGGAGTGTCCGTTTCATACATAATTGGGATAGTAGTGAGTTGGAGGGCTCTAGCATTAATATGTGAATTTCTTCGACTTGTGCTTGTAATTAGAATACTGTATGCTGTCTAA

Protein Analysis

137

Amino Acids

14.89

Weight (kDa)

9.22

Isoelectric Point (pI)

16.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 2 - 113 1.5e-23 Sugar (and other) transporter
MFS_1 PF07690 2 - 131 2.4e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
Acc65I GGTACC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 1 cut(s) 225
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 2 cut(s) 140, 239
AluI AGCT 2 cut(s) 140, 239
Alw26I GTCTC 1 cut(s) 97
AoxI GGCC 2 cut(s) 96, 164
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 368
AseI ATTAAT 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 372
Asp718I GGTACC 1 cut(s) 223
AspS9I GGNCC 2 cut(s) 65, 96
AsuNHI GCTAGC 1 cut(s) 136
AvaII GGWCC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 352
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 137, 353
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 65, 96
BmiI GGNNCC 5 cut(s) 22, 67, 97, 208, 225
BmtI GCTAGC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 2 cut(s) 98, 166
BshNI GGYRCC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 2 cut(s) 98, 166
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 1 cut(s) 294
BspANI GGCC 2 cut(s) 98, 166
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 5 cut(s) 22, 67, 97, 208, 225
BspMI ACCTGC 1 cut(s) 119
BspOI GCTAGC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 111
BssMI GATC 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 108, 402
BstC8I GCNNGC 2 cut(s) 138, 186
BstDEI CTNAG 1 cut(s) 153
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 265
BsuRI GGCC 2 cut(s) 98, 166
BtgZI GCGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 118
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 138, 186
Cfr13I GGNCC 2 cut(s) 65, 96
Csp6I GTAC 1 cut(s) 224
CviAII CATG 1 cut(s) 100
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 352
FaeI CATG 1 cut(s) 103
FaqI GGGAC 1 cut(s) 51
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 137, 353
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 2 cut(s) 98, 166
Hin1II CATG 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 58, 170, 263
HpyCH4III ACNGT 2 cut(s) 108, 402
HpyCH4V TGCA 4 cut(s) 4, 41, 128, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 1 cut(s) 103
KpnI GGTACC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 3 cut(s) 26, 206, 253
LpnPI CCDG 5 cut(s) 114, 124, 170, 240, 288
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 2 cut(s) 137, 353
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 2 cut(s) 251, 365
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 4 cut(s) 243, 324, 368, 390
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 3 cut(s) 174, 177, 339
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 290, 359
MslI CAYNNNNRTG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 294
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 5 cut(s) 22, 67, 97, 208, 225
PdmI GAANNNNTTC 1 cut(s) 372
PkrI GCNGC 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 359
PspN4I GGNNCC 5 cut(s) 22, 67, 97, 208, 225
PspPI GGNCC 2 cut(s) 65, 96
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 361
SaqAI TTAA 2 cut(s) 290, 359
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 65, 96
SduI GDGCHC 1 cut(s) 352
SetI ASST 4 cut(s) 133, 142, 229, 241
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 361
Sse9I AATT 4 cut(s) 243, 324, 368, 390
SspMI CTAG 2 cut(s) 137, 353
TaaI ACNGT 2 cut(s) 108, 402
TaqI TCGA 3 cut(s) 88, 262, 376
TasI AATT 4 cut(s) 243, 324, 368, 390
Tru1I TTAA 2 cut(s) 290, 359
Tru9I TTAA 2 cut(s) 290, 359
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 70, 223, 306
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 65
VspI ATTAAT 1 cut(s) 359
XapI RAATTY 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 137, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.