Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

83117504 .. 83119422

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG603100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGTTTTCAATGTTTGGCGCCATCTTGACATTCGGTGCAATGATAGGTGCTATCACAATTGGGCCGATCACTGATTTTATTGGTCGAAAAGGGGCGTTGAGATTTTCCAGTGTTGTCTGTGTTGCAGGTTGGCTTGCCATTTACTTTTCCAAGGGAGCTTTGCTTCTGGACATTGGGAGAATGGCAAAAGGATATGGAATGGGAGCCTTTTCATACGTGGTACCTATATTTGTTGCTGAAATTGCACCCAAACATCTTCGAGGAAGTCTAACTGCTTTGAATCAGTTGATGATCGTTGCTGGAGTGTCAGTGTCCTTCGTAATTGGGGTAGTAGTAAGTTGGAGGACTTTAGCATTAATTGGACTTATTCCCTGTGCTGTGACCATTTTTGGTATGTTTTTTATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAAGAAACCAAAAAGATTTTGAAGATGCACTGCAGAAACTTCGTGGCAGAGATGCCGACATATCTCAAGAAGCAGAAGAAATCCAGGATTATATAGCAACTCTTGACCGGCTCCCTAAAGCCAAATTGCTGGATCTGTTTGAAAGGAGATACTCACGCTCTCTCATTATATCAGTTGGCTTGATGATCTGTCAACAATTGGGAGGAATAAACGGGGTCTGTTTCTATGTCAGCAATATTTTTGAGCAAGCAGGATTTTCTTCCAGCTTGGGAACTATAATCTACGCTGTTCTTCAGGTTGTGGTTACTGGCATTGGTGCAGCCATAATGGATAAAGCTGGAAGAAAGCCTCTAATTTTGGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

267

Amino Acids

29.01

Weight (kDa)

9.32

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 265	8.7e-61	Sugar (and other) transporter
MFS_1	PF07690	2 - 266	8e-21	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	2 cut(s)	20, 223
AclWI	GGATC	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	4 cut(s)	12, 283, 458, 578
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	3 cut(s)	161, 702, 773
AluI	AGCT	3 cut(s)	161, 702, 773
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	576
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	755
AseI	ATTAAT	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	410
BanI	GGYRCC	2 cut(s)	20, 223
BbvI	GCAGC	1 cut(s)	767
BccI	CCATC	2 cut(s)	32, 417
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	756
BlsI	GCNGC	1 cut(s)	757
Bme1390I	CCNGG	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	4 cut(s)	22, 208, 225, 548
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	2 cut(s)	451, 478
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse118I	RCCGGY	1 cut(s)	543
Bse1I	ACTGG	2 cut(s)	111, 748
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	111, 748
BseXI	GCAGC	1 cut(s)	767
BsgI	GTGCAG	1 cut(s)	774
BshFI	GGCC	1 cut(s)	67
BshNI	GGYRCC	2 cut(s)	20, 223
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	69, 294, 568, 621
BspANI	GGCC	1 cut(s)	67
BspLI	GGNNCC	4 cut(s)	22, 208, 225, 548
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	2 cut(s)	20, 223
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	111, 748
BssAI	RCCGGY	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	4 cut(s)	69, 294, 568, 621
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	138, 684
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	4 cut(s)	72, 297, 571, 624
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	4 cut(s)	69, 294, 568, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	767
BstX2I	RGATCY	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	4 cut(s)	72, 118, 318, 464
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	138, 684
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	224
CviQI	GTAC	1 cut(s)	224
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	4 cut(s)	71, 296, 570, 623
DpnII	GATC	4 cut(s)	69, 294, 568, 621
Eco130I	CCWWGG	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	756
Fsp4HI	GCNGC	1 cut(s)	756
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	544
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	629
HindII	GTYRAC	1 cut(s)	629
HinfI	GANTC	2 cut(s)	283, 413
HpaII	CCGG	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188III	TCNNGA	5 cut(s)	28, 170, 410, 503, 539
Hpy8I	GTNNAC	1 cut(s)	629
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	4, 41, 128, 248, 464, 469, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	21
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	227
Kzo9I	GATC	4 cut(s)	69, 294, 568, 621
LmnI	GCTCC	3 cut(s)	158, 206, 552
Lsp1109I	GCAGC	1 cut(s)	767
LweI	GCATC	2 cut(s)	451, 478
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	382, 739
MalI	GATC	4 cut(s)	71, 296, 570, 623
MboI	GATC	4 cut(s)	69, 294, 568, 621
MboII	GAAGA	6 cut(s)	251, 470, 524, 687, 719, 789
MfeI	CAATTG	2 cut(s)	60, 632
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	7 cut(s)	60, 243, 324, 360, 560, 632, 789
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	257, 339, 632, 795
MseI	TTAA	1 cut(s)	359
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	1 cut(s)	521
MunI	CAATTG	2 cut(s)	60, 632
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	245
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	4 cut(s)	69, 294, 568, 621
NlaIV	GGNNCC	4 cut(s)	22, 208, 225, 548
NmuCI	GTSAC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	757
PleI	GAGTC	1 cut(s)	421
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	4 cut(s)	22, 208, 225, 548
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	1 cut(s)	756
Sau3AI	GATC	4 cut(s)	69, 294, 568, 621
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	521
SetI	ASST	8 cut(s)	52, 133, 163, 222, 229, 704, 735, 775
SfaNI	GCATC	2 cut(s)	451, 478
SfcI	CTRYAG	1 cut(s)	467
SfoI	GGCGCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	7 cut(s)	60, 243, 324, 360, 560, 632, 789
SspDI	GGCGCC	1 cut(s)	20
SspI	AATATT	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	153
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	88, 262
TasI	AATT	7 cut(s)	60, 243, 324, 360, 560, 632, 789
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	4 cut(s)	79, 118, 318, 471
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	755
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	4 cut(s)	79, 118, 318, 471
VspI	ATTAAT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.