Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

35765976 .. 35768717

Gene Structure 2742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0223700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCAACGACGTCGTCTTTAAATGAGGTGGAGTTCGAGTACTTGTTTAAGCTGCTGATGATCGGCGACTCCGGCGTCGGCAAGAGCACCCTCCTCTTGAGTTTCACTTCCAATAGCTTTGAAGATCTCTCTCCTACTATCGGTGTGGATTTTAAGGTGAAGCATGTTACTCTTGGGGGGAAAAAGTTGAAGCTGGCAATATGGGATACAGCTGGACAGGAAAGGTTTAGAACGCTTACTAGTTCGTACTACAGAGGAGCTCAAGGCATAATCATGGTGTATGATGTAACGCGACGGGACACATTTACAAATTTATCTGATATATGGGCTAAAGAAATTGACCTGTATTCCACAAGCCCAGATTGCATCAAAATGCTTGTTGGAAACAAGGTTGATAAGGAAAGTGAAAGGGTTGTTAGCAAAAAAGAGGGGATGGACTTTGCAAGAGAATATGGATGCCTTTATCTTGAGTGTAGTGCAAAAACACGAATAAATGTAGAGCAATGCTTCGAGGAACTTGTCCTAAAGATCTTGGAGACACCCAGTCTCCTGGCAGAGGGCTCTGCAGGTGTGAAAAGGAATAATATCTTCGAACAAAAACCTCAGTCTGAAGTGTCAACAGGTGGCTGTTGCTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

213

Amino Acids

23.8

Weight (kDa)

5.41

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 174	2.2e-17	ADP-ribosylation factor family
Ras	PF00071	17 - 178	5.5e-58	Ras family
Roc	PF08477	17 - 132	1.4e-30	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	557
AccII	CGCG	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	11, 75
AfaI	GTAC	2 cut(s)	41, 248
AfiI	CCNNNNNNNGG	2 cut(s)	140, 556
AgsI	TTSAA	2 cut(s)	122, 190
AhdI	GACNNNNNGTC	1 cut(s)	543
AhlI	ACTAGT	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	5 cut(s)	52, 117, 193, 212, 260
AluI	AGCT	5 cut(s)	52, 117, 193, 212, 260
Alw21I	GWGCWC	2 cut(s)	89, 262
Alw26I	GTCTC	2 cut(s)	530, 551
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	169
AsuII	TTCGAA	1 cut(s)	591
BanII	GRGCYC	2 cut(s)	262, 563
Bbv12I	GWGCWC	2 cut(s)	89, 262
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	1 cut(s)	427
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	551
BciVI	GTATCC	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	530, 551
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	250, 564
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	199
BglII	AGATCT	2 cut(s)	124, 528
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	551
BmeRI	GACNNNNNGTC	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	551
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	375, 446
BmuI	ACTGGG	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	3 cut(s)	118, 246, 488
BsaHI	GRCGYC	2 cut(s)	11, 75
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 556
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	438, 461
BseLI	CCNNNNNNNGG	2 cut(s)	140, 556
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	83, 270
BseXI	GCAGC	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	89, 262
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	140, 556
BsmAI	GTCTC	2 cut(s)	530, 551
BsmFI	GGGAC	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	3 cut(s)	89, 262, 563
Bsp143I	GATC	3 cut(s)	60, 124, 528
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	292
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	557
BspT104I	TTCGAA	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	543
BssMI	GATC	3 cut(s)	60, 124, 528
BssNI	GRCGYC	2 cut(s)	11, 75
Bst2UI	CCWGG	1 cut(s)	551
BstACI	GRCGYC	2 cut(s)	11, 75
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	603
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	438, 461
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	3 cut(s)	63, 127, 531
BstMAI	GTCTC	2 cut(s)	530, 551
BstMBI	GATC	3 cut(s)	60, 124, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 363
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	250, 564
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	124, 528
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	124, 528
BsuI	GTATCC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	438, 461
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	1 cut(s)	195
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	40, 247
CviAII	CATG	2 cut(s)	164, 274
CviJI	RGCY	9 cut(s)	52, 117, 193, 212, 260, 329, 357, 561, 627
CviKI_1	RGCY	9 cut(s)	52, 117, 193, 212, 260, 329, 357, 561, 627
CviQI	GTAC	2 cut(s)	40, 247
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	3 cut(s)	62, 126, 530
DpnII	GATC	3 cut(s)	60, 124, 528
DraI	TTTAAA	1 cut(s)	21
DrdI	GACNNNNNNGTC	1 cut(s)	74
DriI	GACNNNNNGTC	1 cut(s)	543
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	543
Ecl136II	GAGCTC	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	262, 563
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	262, 563
FaeI	CATG	2 cut(s)	167, 277
FaiI	YATR	9 cut(s)	165, 202, 269, 275, 282, 323, 325, 453, 637
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	163, 273
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	2 cut(s)	445, 468
FriOI	GRGCYC	2 cut(s)	262, 563
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	2 cut(s)	11, 75
Hin1II	CATG	2 cut(s)	167, 277
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	2 cut(s)	319, 610
Hpy188III	TCNNGA	2 cut(s)	97, 467
Hpy8I	GTNNAC	1 cut(s)	618
Hpy99I	CGWCG	4 cut(s)	13, 16, 80, 297
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	4 cut(s)	366, 443, 479, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 363
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	2 cut(s)	11, 75
Hsp92II	CATG	2 cut(s)	167, 277
Kzo9I	GATC	3 cut(s)	60, 124, 528
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	2 cut(s)	375, 446
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	166, 286
MalI	GATC	3 cut(s)	62, 126, 530
MboI	GATC	3 cut(s)	60, 124, 528
MboII	GAAGA	2 cut(s)	134, 580
MflI	RGATCY	2 cut(s)	124, 528
MhlI	GDGCHC	3 cut(s)	89, 262, 563
MluCI	AATT	2 cut(s)	310, 336
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	19, 101, 104, 248, 421, 505, 550, 612
MseI	TTAA	3 cut(s)	20, 48, 153
MslI	CAYNNNNRTG	2 cut(s)	272, 371
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	72, 363
NdeII	GATC	3 cut(s)	60, 124, 528
NlaIII	CATG	2 cut(s)	167, 277
NspI	RCATGY	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	591
PaqCI	CACCTGC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	124, 528
PsyI	GACNNNGTC	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	41, 248
RsaNI	GTAC	2 cut(s)	40, 247
RseI	CAYNNNNRTG	2 cut(s)	272, 371
SacI	GAGCTC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	20, 48, 153
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	3 cut(s)	60, 124, 528
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	3 cut(s)	89, 262, 563
SfaNI	GCATC	2 cut(s)	375, 446
SfcI	CTRYAG	2 cut(s)	250, 564
SfuI	TTCGAA	1 cut(s)	591
SmiMI	CAYNNNNRTG	2 cut(s)	272, 371
SmlI	CTYRAG	3 cut(s)	97, 261, 467
SmoI	CTYRAG	3 cut(s)	97, 261, 467
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	2 cut(s)	310, 336
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	549
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	36, 510, 591
TasI	AATT	2 cut(s)	310, 336
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	3 cut(s)	20, 48, 153
Tru9I	TTAA	3 cut(s)	20, 48, 153
TseI	GCWGC	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	13
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.