Rh6AG336900
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
53730276 .. 53740374
10099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG336900.1

Sequence Viewer

Length: 1416 bp
ATGGCGATCAAACAGGATGTGGAGAATGTTGTGCAGGAGAACATAAGGGAGCCACTCATTAGGGGTACTGGAGAGGGATCTGGTCATGGAAGCAGCAAAGAGGATCAATTGATGGTTTACCTGAGCACATTTGTCGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTGGGTTATTCATCGCCTACTCAGTCTGCCATCACGGAAGATCTCAGTTTATCAGTGTCAGAGTACTCAGTGTTTGGCTCCATTCTCACATTTGGTGCAATGATAGGTGCTATCACTATTGGACCCATCACCGATTTTGTTGGTCGTAAAGGGGCCATGAGACTGTCCTGTGCTTTCTCTGTTGTAGGTTGGCTTGCTATTTACTTTGCTGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGATATGGAATGGGAGCCTTTTCATATGTTGTACCTGTTTTCATTTCTGAAATTGCACCCAAAAATCTTCGAGGAAGACTAAGTGCGTTAAATCAGTTAATGATTGTTTCTGGAATCTCTGTTTCCTTCATAATTGGGATTGTAGTAAGTTGGAGGGCTTTAGCACTAATAGGACTAATTCCGTGTGCTGTGACCCTTTTCGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCACAAAGATTTTGAAGTGGCACTGCAGAAACTTCGTGGGAAAAATGCTGACGATTTTATAGCAACTCTTGACGGTCTCCCTAAAGCCAAATTGCTAGGTTTGTTTCAAAGGAGATACTTGCCCTCAGTCTTGATAGCAGTGGGCTTGATGGTCTTTCAAGAACTGGGAGGAATCAATGGTGTCTGTTTCTATGTCGGTGATATTTTTGAGCAAGCAGGATTTTCTTCCACCATTGGAACTATAACCTACGCTATTCTCCAGGTTGTGGTGACTGGCATTGGTGCATCCATAGTGGATAAAGCTGGACGAAAGCCCCTGATTTTGACTTCTGCATCAGGATTGCTACTTGGCTGTGTGGTGACTGCAATTGCATTCTTTCTCACGGCTCAAGAATTGGCTCTCAATGGTGCTCCCGTACTTGCTGTAACTGGCATACTGATCTTCGTGTGCGCCTTTTCAATCGGAATGGGAGCAGTACCTTGGCTTATTATGTCTGAGATATTCCCTATAAATATTAAAGGGCAGGCCGGAAGCTTAGCAACGCTAGTGAACTGGTTTGGTGCATGGTTGTGTTCCTACTCTTTCAACTTCCTTATGAGTTGGAGCACCTATGGTACCTTCATTCTGTATGCAGCAATCAATGCTCTAGCTATAGTTTTTGTGATTTTCTTTGTACCTGAAACAAAGGGGAAAACTCTTGAACAAATCCAAACAGCCATAAGCAAAGAGAGAAGTGAAGAAAGATAA

Protein Analysis

471

Amino Acids

50.49

Weight (kDa)

6.74

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 59 - 410 6.7e-26 Major Facilitator Superfamily
Sugar_tr PF00083 65 - 461 3e-89 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1283
AccB1I GGYRCC 1 cut(s) 1283
AccB7I CCANNNNNTGG 1 cut(s) 934
AciI CCGC 1 cut(s) 144
AclWI GGATC 2 cut(s) 85, 111
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 7 cut(s) 67, 233, 450, 1086, 1146, 1285, 1344
AfiI CCNNNNNNNGG 1 cut(s) 934
AgsI TTSAA 6 cut(s) 683, 776, 827, 1128, 1255, 1370
AjnI CCWGG 1 cut(s) 927
AluBI AGCT 3 cut(s) 971, 1203, 1319
AluI AGCT 3 cut(s) 971, 1203, 1319
Alw21I GWGCWC 3 cut(s) 128, 1081, 1277
Alw26I GTCTC 4 cut(s) 322, 626, 645, 749
AlwI GGATC 2 cut(s) 85, 111
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 2 cut(s) 321, 1194
ApeKI GCWGC 2 cut(s) 93, 1301
ApoI RAATTY 1 cut(s) 155
Asp718I GGTACC 1 cut(s) 1283
AspLEI GCGC 1 cut(s) 1121
AspS9I GGNCC 2 cut(s) 290, 321
AsuHPI GGTGA 4 cut(s) 289, 878, 949, 1039
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 1283
BanII GRGCYC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 499
Bbv12I GWGCWC 3 cut(s) 128, 1081, 1277
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 105, 1313
BccI CCATC 5 cut(s) 106, 206, 302, 642, 811
BceAI ACGGC 1 cut(s) 1068
BcgI CGANNNNNNTGC 4 cut(s) 115, 149, 683, 717
BciT130I CCWGG 1 cut(s) 929
BcoDI GTCTC 4 cut(s) 322, 626, 645, 749
BfaI CTAG 3 cut(s) 764, 1214, 1316
BfmI CTRYAG 2 cut(s) 692, 1320
BglII AGATCT 1 cut(s) 208
BisI GCNGC 3 cut(s) 94, 145, 1302
BlpI GCTNAGC 1 cut(s) 1204
BlsI GCNGC 3 cut(s) 95, 146, 1303
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 929
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 2 cut(s) 290, 321
BmiI GGNNCC 6 cut(s) 51, 247, 292, 322, 433, 1285
BmrFI CCNGG 1 cut(s) 929
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 3 cut(s) 152, 962, 1010
BmuI ACTGGG 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 499
BpmI CTGGAG 2 cut(s) 90, 911
Bpu10I CCTNAGC 2 cut(s) 122, 378
Bpu1102I GCTNAGC 1 cut(s) 1204
BpuEI CTTGAG 1 cut(s) 1041
BsaHI GRCGYC 1 cut(s) 667
BsaI GGTCTC 2 cut(s) 626, 749
BsaJI CCNNGG 1 cut(s) 1148
Bsc4I CCNNNNNNNGG 1 cut(s) 934
Bse1I ACTGG 6 cut(s) 73, 421, 837, 946, 1102, 1226
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 929
BseDI CCNNGG 1 cut(s) 1148
BseGI GGATG 3 cut(s) 22, 167, 953
BseLI CCNNNNNNNGG 1 cut(s) 934
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 7 cut(s) 113, 203, 226, 249, 369, 807, 1155
BseNI ACTGG 6 cut(s) 73, 421, 837, 946, 1102, 1226
BseXI GCAGC 2 cut(s) 105, 1313
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 2 cut(s) 323, 1196
BshNI GGYRCC 1 cut(s) 1283
BsiHKAI GWGCWC 3 cut(s) 128, 1081, 1277
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 1 cut(s) 1197
BslI CCNNNNNNNGG 1 cut(s) 934
BsmAI GTCTC 4 cut(s) 322, 626, 645, 749
BsmI GAATGC 1 cut(s) 1040
BsnI GGCC 2 cut(s) 323, 1196
Bso31I GGTCTC 2 cut(s) 626, 749
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 4 cut(s) 128, 394, 1081, 1277
Bsp143I GATC 5 cut(s) 6, 77, 103, 208, 1107
Bsp1720I GCTNAGC 1 cut(s) 1204
BspACI CCGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 323, 1196
BspCNI CTCAG 7 cut(s) 114, 202, 225, 248, 370, 806, 1156
BspLI GGNNCC 6 cut(s) 51, 247, 292, 322, 433, 1285
BspMAI CTGCAG 1 cut(s) 696
BspPI GGATC 2 cut(s) 85, 111
BspT107I GGYRCC 1 cut(s) 1283
BspTNI GGTCTC 2 cut(s) 626, 749
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 6 cut(s) 73, 421, 837, 946, 1102, 1226
BssECI CCNNGG 1 cut(s) 1148
BssMI GATC 5 cut(s) 6, 77, 103, 208, 1107
BssNI GRCGYC 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 1148
Bst2UI CCWGG 1 cut(s) 929
Bst4CI ACNGT 2 cut(s) 333, 743
BstACI GRCGYC 1 cut(s) 667
BstAPI GCANNNNNTGC 1 cut(s) 1310
BstC8I GCNNGC 3 cut(s) 363, 882, 1194
BstDEI CTNAG 9 cut(s) 122, 189, 212, 235, 378, 497, 793, 1164, 1204
BstF5I GGATG 3 cut(s) 22, 167, 953
BstHHI GCGC 1 cut(s) 1121
BstKTI GATC 5 cut(s) 9, 80, 106, 211, 1110
BstMAI GTCTC 4 cut(s) 322, 626, 645, 749
BstMBI GATC 5 cut(s) 6, 77, 103, 208, 1107
BstMWI GCNNNNNNNGC 2 cut(s) 383, 1310
BstNI CCWGG 1 cut(s) 929
BstSCI CCNGG 1 cut(s) 927
BstSFI CTRYAG 2 cut(s) 692, 1320
BstV1I GCAGC 2 cut(s) 105, 1313
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 2 cut(s) 77, 208
BstYI RGATCY 2 cut(s) 77, 208
BsuRI GGCC 2 cut(s) 323, 1196
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 3 cut(s) 22, 167, 953
BtsI GCAGTG 2 cut(s) 689, 813
BtsIMutI CAGTG 4 cut(s) 228, 243, 689, 813
Cac8I GCNNGC 3 cut(s) 363, 882, 1194
CfoI GCGC 1 cut(s) 1121
Cfr13I GGNCC 2 cut(s) 290, 321
CseI GACGC 1 cut(s) 675
Csp6I GTAC 7 cut(s) 66, 232, 449, 1085, 1145, 1284, 1343
CviAII CATG 3 cut(s) 86, 325, 1233
CviQI GTAC 7 cut(s) 66, 232, 449, 1085, 1145, 1284, 1343
DdeI CTNAG 9 cut(s) 122, 189, 212, 235, 378, 497, 793, 1164, 1204
DpnI GATC 5 cut(s) 8, 79, 105, 210, 1109
DpnII GATC 5 cut(s) 6, 77, 103, 208, 1107
Eco130I CCWWGG 1 cut(s) 1148
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 2 cut(s) 626, 749
Eco47I GGWCC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 927
EcoT14I CCWWGG 1 cut(s) 1148
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 1148
FaeI CATG 3 cut(s) 89, 328, 1236
FatI CATG 3 cut(s) 85, 324, 1232
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 94, 145, 1302
FokI GGATG 3 cut(s) 29, 174, 940
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 3 cut(s) 94, 145, 1302
FspBI CTAG 3 cut(s) 764, 1214, 1316
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 3 cut(s) 94, 145, 1302
GsuI CTGGAG 2 cut(s) 90, 911
HaeIII GGCC 2 cut(s) 323, 1196
HapII CCGG 1 cut(s) 1197
HgaI GACGC 1 cut(s) 675
HhaI GCGC 1 cut(s) 1121
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 3 cut(s) 89, 328, 1236
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HindIII AAGCTT 1 cut(s) 1201
HinfI GANTC 3 cut(s) 531, 638, 840
HpaII CCGG 1 cut(s) 1197
HphI GGTGA 4 cut(s) 289, 878, 949, 1039
Hpy166II GTNNAC 2 cut(s) 118, 1219
Hpy188I TCNGA 5 cut(s) 161, 229, 466, 1133, 1165
Hpy188III TCNNGA 9 cut(s) 395, 528, 635, 737, 799, 827, 1005, 1058, 1367
Hpy8I GTNNAC 2 cut(s) 118, 1219
HpyAV CCTTC 2 cut(s) 553, 1297
HpyCH4III ACNGT 2 cut(s) 333, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 1310
HpyF3I CTNAG 9 cut(s) 122, 189, 212, 235, 378, 497, 793, 1164, 1204
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 3 cut(s) 89, 328, 1236
HspAI GCGC 1 cut(s) 1119
KpnI GGTACC 1 cut(s) 1287
Kzo9I GATC 5 cut(s) 6, 77, 103, 208, 1107
LmnI GCTCC 6 cut(s) 49, 251, 431, 1084, 1139, 1272
Lsp1109I GCAGC 2 cut(s) 105, 1313
LweI GCATC 3 cut(s) 152, 962, 1010
MaeI CTAG 3 cut(s) 764, 1214, 1316
MaeIII GTNAC 4 cut(s) 607, 937, 1027, 1093
MalI GATC 5 cut(s) 8, 79, 105, 210, 1109
MboI GATC 5 cut(s) 6, 77, 103, 208, 1107
MboII GAAGA 5 cut(s) 218, 476, 504, 885, 1102
MfeI CAATTG 2 cut(s) 107, 1035
MflI RGATCY 2 cut(s) 77, 208
MhlI GDGCHC 4 cut(s) 128, 394, 1081, 1277
MluCI AATT 8 cut(s) 107, 155, 468, 549, 594, 758, 1035, 1061
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 548, 1250
MnlI CCTC 7 cut(s) 67, 94, 373, 482, 564, 802, 830
MseI TTAA 3 cut(s) 506, 515, 1185
MslI CAYNNNNRTG 1 cut(s) 1237
MspI CCGG 1 cut(s) 1197
MspR9I CCNGG 1 cut(s) 929
MunI CAATTG 2 cut(s) 107, 1035
Mva1269I GAATGC 1 cut(s) 1040
MvaI CCWGG 1 cut(s) 929
MwoI GCNNNNNNNGC 2 cut(s) 383, 1310
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 6, 77, 103, 208, 1107
NlaIII CATG 3 cut(s) 89, 328, 1236
NlaIV GGNNCC 6 cut(s) 51, 247, 292, 322, 433, 1285
NmuCI GTSAC 3 cut(s) 607, 937, 1027
PctI GAATGC 1 cut(s) 1040
PfeI GAWTC 2 cut(s) 531, 840
PflMI CCANNNNNTGG 1 cut(s) 934
PkrI GCNGC 3 cut(s) 95, 146, 1303
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Psp6I CCWGG 1 cut(s) 927
PspGI CCWGG 1 cut(s) 927
PspN4I GGNNCC 6 cut(s) 51, 247, 292, 322, 433, 1285
PspPI GGNCC 2 cut(s) 290, 321
PstI CTGCAG 1 cut(s) 696
PsuI RGATCY 2 cut(s) 77, 208
RsaI GTAC 7 cut(s) 67, 233, 450, 1086, 1146, 1285, 1344
RsaNI GTAC 7 cut(s) 66, 232, 449, 1085, 1145, 1284, 1343
RseI CAYNNNNRTG 1 cut(s) 1237
SaqAI TTAA 3 cut(s) 506, 515, 1185
SatI GCNGC 3 cut(s) 94, 145, 1302
Sau3AI GATC 5 cut(s) 6, 77, 103, 208, 1107
Sau96I GGNCC 2 cut(s) 290, 321
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 929
SduI GDGCHC 4 cut(s) 128, 394, 1081, 1277
SfaNI GCATC 3 cut(s) 152, 962, 1010
SfcI CTRYAG 2 cut(s) 692, 1320
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 1237
SmlI CTYRAG 1 cut(s) 1056
SmoI CTYRAG 1 cut(s) 1056
Sse9I AATT 8 cut(s) 107, 155, 468, 549, 594, 758, 1035, 1061
SsiI CCGC 1 cut(s) 144
SspI AATATT 1 cut(s) 1183
SspMI CTAG 3 cut(s) 764, 1214, 1316
StyD4I CCNGG 1 cut(s) 927
StyI CCWWGG 1 cut(s) 1148
TaaI ACNGT 2 cut(s) 333, 743
TaqI TCGA 1 cut(s) 487
TaqII GACCGA 1 cut(s) 608
TasI AATT 8 cut(s) 107, 155, 468, 549, 594, 758, 1035, 1061
TatI WGTACW 1 cut(s) 231
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 2 cut(s) 531, 840
Tru1I TTAA 3 cut(s) 506, 515, 1185
Tru9I TTAA 3 cut(s) 506, 515, 1185
TscAI CASTG 4 cut(s) 228, 243, 696, 813
TseFI GTSAC 3 cut(s) 607, 937, 1027
TseI GCWGC 2 cut(s) 93, 1301
Tsp45I GTSAC 3 cut(s) 607, 937, 1027
TspDTI ATGAA 7 cut(s) 168, 168, 429, 448, 535, 619, 1279
TspGWI ACGGA 2 cut(s) 218, 588
TspRI CASTG 4 cut(s) 228, 243, 696, 813
Van91I CCANNNNNTGG 1 cut(s) 934
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 155
XspI CTAG 3 cut(s) 764, 1214, 1316
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.