Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

28629673 .. 28631148

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25950.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCCATCAAAGAGAACGTAGAGAGGGATGTGCAGAAGGAGGAAGCAAGAGAGCCACTCATGAGGGTGGTGGAGAATAAAATGGACGGTGAAGATCGAAGCAGCAGAGGGGATCAATGGATGGTTTATCTCAGCACATTTGTTGCAGTTTGTGGCTCTTTTGAATTTGGATCCTGTGTTGGTTATTCATCGCCGACTCAATCTGCCATCAGGGAAGATCTCAGTTTAACATTAGCAGAGTTTTCAGTGTTTGGATCCATATTGACATTCGGCGCAATGATAGGTGCTATCACAATTGGTCCCATAACTGATTTTCTAGGCCGGAAAGGGGCGTTGAGAGTTTCCTGTGCTTTCTGTGTTGTAGGTTGGCTCGCTATTTACTTCTCGAAGGGAGTTTTGTCTCTGGACATTGGGAGACTGGCAAGTGGATATGGAATGGGAGCCTTTTCATACGTGGTACCTGTTTTCGTAGCTGAAATCGCACCCAAACATCTTCGAGGAAGACTAACTGCTGTAAATCAGTTAATGATCTGCGTTGGAGGGTCCATGTCGTTCATATTTGGGGTAGTAGTAAGTTGGAGGGATTTAGCATTAATCGGTGAATTGCTTAGACACACCGTGCTTAATCAGAAAACCCTGCGTTATCTAATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

219

Amino Acids

23.88

Weight (kDa)

7.61

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AclWI	GGATC	5 cut(s)	120, 165, 178, 249, 262
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	164
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	405, 409
AlwI	GGATC	5 cut(s)	120, 165, 178, 249, 262
AoxI	GGCC	2 cut(s)	3, 319
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	164
AseI	ATTAAT	1 cut(s)	593
Asp718I	GGTACC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	299, 543
AsuHPI	GGTGA	2 cut(s)	101, 611
AvaII	GGWCC	2 cut(s)	299, 543
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	170, 254
BanI	GGYRCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	3 cut(s)	14, 115, 215
BcoDI	GTCTC	2 cut(s)	405, 409
BfaI	CTAG	1 cut(s)	317
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	299, 543
BmgT120I	GGNCC	2 cut(s)	299, 543
BmiI	GGNNCC	6 cut(s)	172, 256, 301, 442, 459, 544
BpiI	GAAGAC	1 cut(s)	508
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BsaAI	YACGTR	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	34, 126
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	145, 235
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	5, 321
BshNI	GGYRCC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	405, 409
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	5, 321
Bsp143I	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
BspANI	GGCC	2 cut(s)	5, 321
BspCNI	CTCAG	2 cut(s)	144, 234
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	6 cut(s)	172, 256, 301, 442, 459, 544
BspPI	GGATC	5 cut(s)	120, 165, 178, 249, 262
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	423
BssMI	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
Bst4CI	ACNGT	3 cut(s)	89, 619, 654
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	131, 221, 608
BstF5I	GGATG	2 cut(s)	34, 126
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	6 cut(s)	97, 115, 173, 220, 257, 531
BstMAI	GTCTC	2 cut(s)	405, 409
BstMBI	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	3 cut(s)	170, 217, 254
BstYI	RGATCY	3 cut(s)	170, 217, 254
BsuRI	GGCC	2 cut(s)	5, 321
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	34, 126
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	372
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	299, 543
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	2 cut(s)	61, 547
CviJI	RGCY	7 cut(s)	5, 55, 156, 321, 370, 443, 473
CviKI_1	RGCY	7 cut(s)	5, 55, 156, 321, 370, 443, 473
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	3 cut(s)	131, 221, 608
DpnI	GATC	6 cut(s)	96, 114, 172, 219, 256, 530
DpnII	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
DraIII	CACNNNGTG	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	299, 543
FaeI	CATG	2 cut(s)	64, 550
FaiI	YATR	7 cut(s)	62, 260, 305, 432, 451, 548, 557
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	2 cut(s)	60, 546
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	2 cut(s)	41, 133
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	5, 321
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	64, 550
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	2 cut(s)	101, 611
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	3 cut(s)	61, 385, 404
HpyAV	CCTTC	2 cut(s)	31, 382
HpyCH4III	ACNGT	3 cut(s)	89, 619, 654
HpyCH4IV	ACGT	2 cut(s)	18, 453
HpyCH4V	TGCA	2 cut(s)	34, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	3 cut(s)	131, 221, 608
HpySE526I	ACGT	2 cut(s)	18, 453
Hsp92II	CATG	2 cut(s)	64, 550
HspAI	GCGC	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
LmnI	GCTCC	1 cut(s)	440
LpnPI	CCDG	8 cut(s)	187, 196, 335, 358, 389, 404, 474, 650
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	18, 453
MalI	GATC	6 cut(s)	96, 114, 172, 219, 256, 530
MboI	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
MboII	GAAGA	4 cut(s)	104, 227, 485, 513
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	3 cut(s)	170, 217, 254
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	164, 294, 602
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	517, 557
MnlI	CCTC	7 cut(s)	18, 34, 57, 101, 491, 533, 573
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	227, 524, 593, 624
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
NlaIII	CATG	2 cut(s)	64, 550
NlaIV	GGNNCC	6 cut(s)	172, 256, 301, 442, 459, 544
PagI	TCATGA	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	454
PshBI	ATTAAT	1 cut(s)	593
PspN4I	GGNNCC	6 cut(s)	172, 256, 301, 442, 459, 544
PspPI	GGNCC	2 cut(s)	299, 543
PsuI	RGATCY	3 cut(s)	170, 217, 254
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	227, 524, 593, 624
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	6 cut(s)	94, 112, 170, 217, 254, 528
Sau96I	GGNCC	2 cut(s)	299, 543
SchI	GAGTC	1 cut(s)	190
SetI	ASST	6 cut(s)	21, 286, 367, 456, 463, 475
SinI	GGWCC	2 cut(s)	299, 543
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	3 cut(s)	164, 294, 602
SspMI	CTAG	1 cut(s)	317
TaaI	ACNGT	3 cut(s)	89, 619, 654
TaiI	ACGT	2 cut(s)	21, 456
TaqI	TCGA	3 cut(s)	97, 386, 496
TasI	AATT	3 cut(s)	164, 294, 602
Tru1I	TTAA	4 cut(s)	227, 524, 593, 624
Tru9I	TTAA	4 cut(s)	227, 524, 593, 624
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	3 cut(s)	177, 438, 544
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	299, 543
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.