Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

41256007 .. 41260107

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1293100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGTTATTTTCTCTTGGATTGGGGTCTTTTTTGCATGTTACAGCTGATCAGATGCAAAAGGCAATGGAGATGGATCCTGGTTGGAAGTATTCAATGTTTGGCTCCATTTTGACATTTGGTGCAATGATAGGTGCTATCACAATCGGGCCGATCACTGATTTTCTTGGTCGAAAAGGGGCATTGAGAATGTCCTGCGTTTTCTGTGTTGCAGGCTGGCTTGCTATTTACTTCTCCAAGGGGGCTGTGTCTCTGGATGTCGGAAGAGTGGCAACTGGGTACGGAAGTGGAGCATTTTCGTACATTGTACCTGTTTTCGTAGCTGAGATTGCGCCAAAAAATCTTCGAGGAAGACTAACTGCTGTAAATCAGTTAATGATCGTTTCTGGAGTGTCCGTTTCCTTCATTATCGGGGTGGTAGTGCATTGGCGGGCTTTAGCACTAATTGGAATTGTTCCCTGTGCTGTGATCATTTTCGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCGGAAAGAGTTTGAATTAGCTCTGCAGAAACTTCGCGGCAAAGACGCTGACATATCTGATGAAGCAGCAGAAATCCAGGAGTATATCGCAACTCTTGATCGGCTCCCTCAATCCAAATTGCTCGATTTGTTTCAAACGAGATACTTGCGCTCGGTCATTATTGCAGTCGGGTTGATGGTCTGTCAACAATTGGGGGGAATCAACGGGGTCTGTTTCTATGTCAGTGATATATTTGAGCAAGCAGGATTTTCTCCAGACATCGGAACTATAACCTACGCCATTCTTCAGGTTGTCGTAACTGGCCTTGGTGCAGCCGTGATGGATAAAGCGGGAAGAAAGCCTCTAATTTTGGCTTCTGCATCAGGGTTGATACTTGGCTGTGTCCTTGTTGCCATTTCATTCTTTCTGAAGGTTCATGAATTGGTACTCGACGCAGCTCCCATATTTGCTGTAGCAGGCATATTGATCTTTATAGGATCTTTTTCGATAGGAATGGGAGCAGTTCCGTGGGTTATAATGTCGGAGATATTCCCTATAAACATTAAAGGACAGGCCGGAAGCTTAACAACGTTGGTGAACTGGGTTGGTGCATGGTTGTGTTCCTACACTTTCAACTTTCTTATGAGTTGGAACTCATATGGTACCTTCATTCTGTATGCAGTGGTCAACGTTCTCGCTGTGTTGTTCGTGATTGCTCTTGTACCTGAAACAAAGGGAAAAACCCTGGAACAAATCCAAGGAGAAATTAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

427

Amino Acids

45.96

Weight (kDa)

8.4

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	28 - 421	1.2e-92	Sugar (and other) transporter
MFS_1	PF07690	30 - 372	1.2e-22	Major Facilitator Superfamily
MFS_1	PF07690	267 - 417	6.2e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1040
Acc65I	GGTACC	1 cut(s)	1166
AccB1I	GGYRCC	1 cut(s)	1166
AccII	CGCG	1 cut(s)	561
AciI	CCGC	3 cut(s)	427, 561, 854
AclI	AACGTT	2 cut(s)	1094, 1194
AclWI	GGATC	3 cut(s)	68, 81, 1009
AcuI	CTGAAG	2 cut(s)	794, 953
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	6 cut(s)	278, 299, 306, 951, 1168, 1227
AfiI	CCNNNNNNNGG	1 cut(s)	785
AgsI	TTSAA	4 cut(s)	93, 539, 659, 1138
AjnI	CCWGG	3 cut(s)	76, 600, 1248
AluBI	AGCT	5 cut(s)	44, 320, 545, 962, 1086
AluI	AGCT	5 cut(s)	44, 320, 545, 962, 1086
Alw26I	GTCTC	3 cut(s)	252, 482, 501
AlwI	GGATC	3 cut(s)	68, 81, 1009
Ama87I	CYCGRG	1 cut(s)	491
AoxI	GGCC	3 cut(s)	146, 826, 1077
ApeKI	GCWGC	3 cut(s)	590, 836, 959
Asp718I	GGTACC	1 cut(s)	1166
AspLEI	GCGC	2 cut(s)	331, 675
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	1111
AvaI	CYCGRG	1 cut(s)	491
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BamHI	GGATCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	1166
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	3 cut(s)	602, 848, 971
BccI	CCATC	4 cut(s)	64, 498, 694, 838
BceAI	ACGGC	1 cut(s)	824
BcgI	CGANNNNNNTGC	4 cut(s)	539, 573, 652, 686
BciT130I	CCWGG	3 cut(s)	78, 602, 1250
BclI	TGATCA	2 cut(s)	46, 465
BcoDI	GTCTC	3 cut(s)	252, 482, 501
BfmI	CTRYAG	2 cut(s)	548, 975
BisI	GCNGC	4 cut(s)	562, 591, 837, 960
BlsI	GCNGC	4 cut(s)	563, 592, 838, 961
Bme1390I	CCNGG	3 cut(s)	78, 602, 1250
BmeT110I	CYCGRG	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	4 cut(s)	75, 103, 629, 1168
BmrFI	CCNGG	3 cut(s)	78, 602, 1250
BmrI	ACTGGG	2 cut(s)	282, 1114
BmsI	GCATC	2 cut(s)	42, 893
BmuI	ACTGGG	2 cut(s)	282, 1114
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	405, 762
BsaHI	GRCGYC	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	5 cut(s)	234, 829, 1031, 1248, 1261
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	785
Bse1I	ACTGG	3 cut(s)	277, 829, 1109
Bse3DI	GCAATG	2 cut(s)	69, 129
BseBI	CCWGG	3 cut(s)	78, 602, 1250
BseDI	CCNNGG	5 cut(s)	234, 829, 1031, 1248, 1261
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	785
BseMI	GCAATG	2 cut(s)	69, 129
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	277, 829, 1109
BseXI	GCAGC	3 cut(s)	602, 848, 971
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	3 cut(s)	148, 828, 1079
BshNI	GGYRCC	1 cut(s)	1166
BsiHKCI	CYCGRG	1 cut(s)	491
BsiSI	CCGG	2 cut(s)	526, 1080
BslI	CCNNNNNNNGG	1 cut(s)	785
BsmAI	GTCTC	3 cut(s)	252, 482, 501
BsnI	GGCC	3 cut(s)	148, 828, 1079
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	491
Bsp143I	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
BspACI	CCGC	3 cut(s)	427, 561, 854
BspANI	GGCC	3 cut(s)	148, 828, 1079
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	561
BspHI	TCATGA	1 cut(s)	940
BspLI	GGNNCC	4 cut(s)	75, 103, 629, 1168
BspMAI	CTGCAG	1 cut(s)	552
BspPI	GGATC	3 cut(s)	68, 81, 1009
BspT107I	GGYRCC	1 cut(s)	1166
BspTNI	GGTCTC	1 cut(s)	482
BsrDI	GCAATG	2 cut(s)	69, 129
BsrI	ACTGG	3 cut(s)	277, 829, 1109
BssECI	CCNNGG	5 cut(s)	234, 829, 1031, 1248, 1261
BssMI	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
BssNI	GRCGYC	1 cut(s)	523
BssT1I	CCWWGG	3 cut(s)	234, 829, 1261
Bst2UI	CCWGG	3 cut(s)	78, 602, 1250
Bst6I	CTCTTC	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	6 cut(s)	211, 215, 219, 429, 765, 982
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	1031
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	331, 675
BstKTI	GATC	8 cut(s)	49, 76, 153, 378, 468, 625, 993, 1004
BstMAI	GTCTC	3 cut(s)	252, 482, 501
BstMBI	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	3 cut(s)	78, 602, 1250
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	3 cut(s)	76, 600, 1248
BstSFI	CTRYAG	2 cut(s)	548, 975
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	602, 848, 971
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	73, 1001
BstYI	RGATCY	2 cut(s)	73, 1001
BsuRI	GGCC	3 cut(s)	148, 828, 1079
BtgI	CCRYGG	1 cut(s)	1031
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	1191
BtsIMutI	CAGTG	3 cut(s)	153, 754, 1191
Cac8I	GCNNGC	6 cut(s)	211, 215, 219, 429, 765, 982
CciI	TCATGA	1 cut(s)	940
CfoI	GCGC	2 cut(s)	331, 675
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	3 cut(s)	531, 578, 965
Csp6I	GTAC	6 cut(s)	277, 298, 305, 950, 1167, 1226
CviAII	CATG	3 cut(s)	35, 941, 1116
CviQI	GTAC	6 cut(s)	277, 298, 305, 950, 1167, 1226
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	8 cut(s)	48, 75, 152, 377, 467, 624, 992, 1003
DpnII	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	3 cut(s)	234, 829, 1261
Eco31I	GGTCTC	1 cut(s)	482
Eco57I	CTGAAG	2 cut(s)	794, 953
Eco88I	CYCGRG	1 cut(s)	491
EcoRII	CCWGG	3 cut(s)	76, 600, 1248
EcoT14I	CCWWGG	3 cut(s)	234, 829, 1261
ErhI	CCWWGG	3 cut(s)	234, 829, 1261
FaeI	CATG	3 cut(s)	38, 944, 1119
FatI	CATG	3 cut(s)	34, 940, 1115
FauI	CCCGC	2 cut(s)	420, 847
FauNDI	CATATG	1 cut(s)	1162
FbaI	TGATCA	2 cut(s)	46, 465
Fnu4HI	GCNGC	4 cut(s)	562, 591, 837, 960
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	562, 591, 837, 960
GlaI	GCGC	2 cut(s)	330, 674
GluI	GCNGC	4 cut(s)	562, 591, 837, 960
GsuI	CTGGAG	2 cut(s)	405, 762
HaeIII	GGCC	3 cut(s)	148, 828, 1079
HapII	CCGG	2 cut(s)	526, 1080
HgaI	GACGC	3 cut(s)	531, 578, 965
HhaI	GCGC	2 cut(s)	331, 675
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	3 cut(s)	38, 944, 1119
Hin6I	GCGC	2 cut(s)	329, 673
HinP1I	GCGC	2 cut(s)	329, 673
HincII	GTYRAC	2 cut(s)	710, 1192
HindII	GTYRAC	2 cut(s)	710, 1192
HindIII	AAGCTT	1 cut(s)	1084
HinfI	GANTC	2 cut(s)	494, 723
HpaII	CCGG	2 cut(s)	526, 1080
HphI	GGTGA	1 cut(s)	1111
Hpy166II	GTNNAC	3 cut(s)	710, 1102, 1192
Hpy188I	TCNGA	6 cut(s)	51, 260, 583, 788, 933, 1048
Hpy188III	TCNNGA	7 cut(s)	251, 384, 491, 620, 779, 941, 1213
Hpy8I	GTNNAC	3 cut(s)	710, 1102, 1192
Hpy99I	CGWCG	1 cut(s)	959
HpyAV	CCTTC	3 cut(s)	409, 928, 1180
HpyCH4IV	ACGT	2 cut(s)	1094, 1194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	1094, 1194
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	3 cut(s)	38, 944, 1119
HspAI	GCGC	2 cut(s)	329, 673
KpnI	GGTACC	1 cut(s)	1170
Ksp22I	TGATCA	2 cut(s)	46, 465
Kzo9I	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
LmnI	GCTCC	5 cut(s)	107, 287, 633, 967, 1022
Lsp1109I	GCAGC	3 cut(s)	602, 848, 971
LweI	GCATC	2 cut(s)	42, 893
MaeII	ACGT	2 cut(s)	1094, 1194
MaeIII	GTNAC	2 cut(s)	37, 820
MalI	GATC	8 cut(s)	48, 75, 152, 377, 467, 624, 992, 1003
MboI	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
MboII	GAAGA	5 cut(s)	273, 332, 360, 800, 870
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	2 cut(s)	73, 1001
MluCI	AATT	9 cut(s)	441, 447, 539, 641, 713, 870, 944, 1269, 1276
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	4 cut(s)	62, 238, 1026, 1133
MnlI	CCTC	3 cut(s)	338, 642, 876
MseI	TTAA	5 cut(s)	371, 1068, 1088, 1272, 1279
MslI	CAYNNNNRTG	1 cut(s)	1120
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	526, 1080
MspR9I	CCNGG	3 cut(s)	78, 602, 1250
MunI	CAATTG	1 cut(s)	713
MvaI	CCWGG	3 cut(s)	78, 602, 1250
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeI	CATATG	1 cut(s)	1162
NdeII	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
NlaIII	CATG	3 cut(s)	38, 944, 1119
NlaIV	GGNNCC	4 cut(s)	75, 103, 629, 1168
NspI	RCATGY	1 cut(s)	38
PagI	TCATGA	1 cut(s)	940
PfeI	GAWTC	1 cut(s)	723
PfoI	TCCNGGA	1 cut(s)	600
PkrI	GCNGC	4 cut(s)	563, 592, 838, 961
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	1040
Psp1406I	AACGTT	2 cut(s)	1094, 1194
Psp6I	CCWGG	3 cut(s)	76, 600, 1248
PspGI	CCWGG	3 cut(s)	76, 600, 1248
PspN4I	GGNNCC	4 cut(s)	75, 103, 629, 1168
PspPI	GGNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	73, 1001
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	6 cut(s)	278, 299, 306, 951, 1168, 1227
RsaNI	GTAC	6 cut(s)	277, 298, 305, 950, 1167, 1226
RseI	CAYNNNNRTG	1 cut(s)	1120
SaqAI	TTAA	5 cut(s)	371, 1068, 1088, 1272, 1279
SatI	GCNGC	4 cut(s)	562, 591, 837, 960
Sau3AI	GATC	8 cut(s)	46, 73, 150, 375, 465, 622, 990, 1001
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	3 cut(s)	78, 602, 1250
SfaNI	GCATC	2 cut(s)	42, 893
SfcI	CTRYAG	2 cut(s)	548, 975
SmiMI	CAYNNNNRTG	1 cut(s)	1120
Sse9I	AATT	9 cut(s)	441, 447, 539, 641, 713, 870, 944, 1269, 1276
SsiI	CCGC	3 cut(s)	427, 561, 854
StyD4I	CCNGG	3 cut(s)	76, 600, 1248
StyI	CCWWGG	3 cut(s)	234, 829, 1261
TaiI	ACGT	2 cut(s)	1097, 1197
TaqI	TCGA	5 cut(s)	169, 343, 648, 954, 1010
TaqII	GACCGA	2 cut(s)	464, 667
TasI	AATT	9 cut(s)	441, 447, 539, 641, 713, 870, 944, 1269, 1276
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	723
Tru1I	TTAA	5 cut(s)	371, 1068, 1088, 1272, 1279
Tru9I	TTAA	5 cut(s)	371, 1068, 1088, 1272, 1279
TscAI	CASTG	3 cut(s)	160, 754, 1191
TseI	GCWGC	3 cut(s)	590, 836, 959
TspDTI	ATGAA	7 cut(s)	391, 475, 600, 912, 929, 957, 1162
TspGWI	ACGGA	3 cut(s)	294, 382, 1020
TspRI	CASTG	3 cut(s)	160, 754, 1191
XceI	RCATGY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.