Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

28636945 .. 28638453

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25960.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCAACCAAGGAGGATGTGGAGAGTGATGCGCAGGAGGGAGTACGAGCGCCGCTCATGGCGAACGTAGCGGGATCAGCTAGTGGAAGCGGGGGAGGGAACCTGTGGATGGTTTATCTCAGCACATTTGTTGCAATTTGTGGCTCTTATGAGTTTGGATGCTGTGCCGGTTATTCTTCGCCTACTCAGTCCGCAATCCAGGAAGATCTCAGTTTATCATTATCTGAGTATTCAGTGTTTGGTTCCATTTTGACATTTGGTGCAATGGTAGGAGCTATCACTATTGGACCTATCGCTGATTTTCTTGGCCGAAAAGGGGCCTTAAGAGTGTCATGTGCTTTCTGTGTTGCAGGTTGGCTTGCTATTTACTTCTCCAAGGCTGCTTGGTTGTTGGACATTGGGAGACTGCTAACTGGATACGGAATGGGAGCTTTTTCGTACGTGGTACCTATTTTCGTAGCTGAAATTGCACCCAAAAATCTTCGAGGAAGATTAACTGCTGCAAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

171

Amino Acids

17.75

Weight (kDa)

5.02

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	341
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	4 cut(s)	53, 71, 90, 192
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	307
AfaI	GTAC	3 cut(s)	45, 440, 447
AfiI	CCNNNNNNNGG	2 cut(s)	109, 316
AflII	CTTAAG	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	80, 275, 431, 461
AluI	AGCT	4 cut(s)	80, 275, 431, 461
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	2 cut(s)	307, 318
ApeKI	GCWGC	2 cut(s)	380, 500
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	34, 52
AspS9I	GGNCC	2 cut(s)	287, 318
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	367, 487
BccI	CCATC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	3 cut(s)	53, 381, 501
BlsI	GCNGC	3 cut(s)	54, 382, 502
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 318
BmiI	GGNNCC	4 cut(s)	101, 244, 319, 447
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	19, 149
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BsaAI	YACGTR	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	9, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 316
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	9, 375
BseGI	GGATG	3 cut(s)	22, 114, 164
BseLI	CCNNNNNNNGG	2 cut(s)	109, 316
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	4 cut(s)	133, 200, 216, 223
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	2 cut(s)	367, 487
BshFI	GGCC	2 cut(s)	309, 320
BshNI	GGYRCC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	168
BsiWI	CGTACG	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	109, 316
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	309, 320
Bsp143I	GATC	2 cut(s)	74, 205
BspACI	CCGC	4 cut(s)	53, 71, 90, 192
BspANI	GGCC	2 cut(s)	309, 320
BspCNI	CTCAG	4 cut(s)	132, 199, 217, 222
BspLI	GGNNCC	4 cut(s)	101, 244, 319, 447
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	9, 375
BssMI	GATC	2 cut(s)	74, 205
BssT1I	CCWWGG	2 cut(s)	9, 375
Bst2UI	CCWGG	1 cut(s)	200
BstAFI	CTTAAG	1 cut(s)	322
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	4 cut(s)	119, 186, 209, 225
BstF5I	GGATG	3 cut(s)	22, 114, 164
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	34, 52
BstKTI	GATC	2 cut(s)	77, 208
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	74, 205
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 467
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	367, 487
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	309, 320
BtsCI	GGATG	3 cut(s)	22, 114, 164
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	360
CfoI	GCGC	2 cut(s)	34, 52
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	287, 318
Csp6I	GTAC	3 cut(s)	44, 439, 446
CviAII	CATG	2 cut(s)	58, 333
CviJI	RGCY	9 cut(s)	80, 144, 275, 309, 320, 358, 380, 431, 461
CviKI_1	RGCY	9 cut(s)	80, 144, 275, 309, 320, 358, 380, 431, 461
CviQI	GTAC	3 cut(s)	44, 439, 446
DdeI	CTNAG	4 cut(s)	119, 186, 209, 225
DpnI	GATC	2 cut(s)	76, 207
DpnII	GATC	2 cut(s)	74, 205
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	9, 375
Eco47I	GGWCC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	9, 375
ErhI	CCWWGG	2 cut(s)	9, 375
FaeI	CATG	2 cut(s)	61, 336
FaiI	YATR	3 cut(s)	59, 150, 334
FatI	CATG	2 cut(s)	57, 332
FauI	CCCGC	2 cut(s)	64, 83
Fnu4HI	GCNGC	3 cut(s)	53, 381, 501
FokI	GGATG	3 cut(s)	29, 121, 171
Fsp4HI	GCNGC	3 cut(s)	53, 381, 501
FspBI	CTAG	1 cut(s)	81
FspI	TGCGCA	1 cut(s)	33
GlaI	GCGC	2 cut(s)	33, 51
GluI	GCNGC	3 cut(s)	53, 381, 501
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	309, 320
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	2 cut(s)	34, 52
Hin1II	CATG	2 cut(s)	61, 336
Hin6I	GCGC	2 cut(s)	32, 50
HinP1I	GCGC	2 cut(s)	32, 50
HpaII	CCGG	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	66, 441
HpyCH4V	TGCA	5 cut(s)	134, 263, 350, 470, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 467
HpyF3I	CTNAG	4 cut(s)	119, 186, 209, 225
HpySE526I	ACGT	2 cut(s)	66, 441
Hsp92II	CATG	2 cut(s)	61, 336
HspAI	GCGC	2 cut(s)	32, 50
KpnI	GGTACC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	74, 205
LmnI	GCTCC	2 cut(s)	272, 428
LpnPI	CCDG	7 cut(s)	20, 116, 181, 185, 212, 336, 399
Lsp1109I	GCAGC	2 cut(s)	367, 487
LweI	GCATC	2 cut(s)	19, 149
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	66, 441
MalI	GATC	2 cut(s)	76, 207
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	74, 205
MboII	GAAGA	4 cut(s)	168, 215, 473, 501
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	135, 465
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	4 cut(s)	7, 31, 89, 479
MseI	TTAA	2 cut(s)	323, 494
MspCI	CTTAAG	1 cut(s)	322
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 467
NdeII	GATC	2 cut(s)	74, 205
NlaIII	CATG	2 cut(s)	61, 336
NlaIV	GGNNCC	4 cut(s)	101, 244, 319, 447
NsbI	TGCGCA	1 cut(s)	33
Pfl23II	CGTACG	1 cut(s)	438
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	54, 382, 502
Ppu21I	YACGTR	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspLI	CGTACG	1 cut(s)	438
PspN4I	GGNNCC	4 cut(s)	101, 244, 319, 447
PspPI	GGNCC	2 cut(s)	287, 318
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	3 cut(s)	45, 440, 447
RsaNI	GTAC	3 cut(s)	44, 439, 446
SaqAI	TTAA	2 cut(s)	323, 494
SatI	GCNGC	3 cut(s)	53, 381, 501
Sau3AI	GATC	2 cut(s)	74, 205
Sau96I	GGNCC	2 cut(s)	287, 318
ScrFI	CCNGG	1 cut(s)	200
SfaNI	GCATC	2 cut(s)	19, 149
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	135, 465
SsiI	CCGC	4 cut(s)	53, 71, 90, 192
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	9, 375
TaiI	ACGT	2 cut(s)	69, 444
TaqI	TCGA	1 cut(s)	484
TasI	AATT	2 cut(s)	135, 465
TauI	GCSGC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	323, 494
Tru9I	TTAA	2 cut(s)	323, 494
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	2 cut(s)	380, 500
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	240
Vha464I	CTTAAG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.