RLG00000012061
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
14906636 .. 14910031
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012061

Sequence Viewer

Length: 1239 bp
ATGGCCAACAACGAGGATGTAGAGAACTCAAGAGAGCCACTCATGAACAGAGATGGATCAGCTCATGAAGGGCATCAATGGATGGTTTACCTCAGCACATTCGTTGCTGTCTGTGGCTCTTATGAGTTTGGATGCTGTGCAGGTTTTTCGTCTCCTACTGAGGAGGCCATCACTGAAGATCTTAGTTTGTCATTAGCAGAGGCCATGAGACTGTCCAGTGCTTTATGTGTTGCAGGTTGGCTAGCTATATACTTTGCTGAGAGTATTTGGCCTCTTGACATTGGGAGGCTGGCAAATGGTTATGGAATGGGAGCCTTTTCTTACGTGTTAATGATCTGTGCTGGAGTGTCCGTTTCATACATAATTGGGGTGGTAGTGAGTTGGAGGGCTCTAGCATTAATAGGACTTATTCCGTGTGCTGTGATCATTTTCGGCCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGAAAACACAAAGAGTTTGAAGTTGCACTACAGAAACTTCGTGGTGAAGATGCTGATGTATCGCATGAAGCAGCGGAAATCCAGGATTATATAGCAACACTTGACCATCTCCCGAAAGCCAAAATGCTCGATTTGTTTCAAAGGAGATACTCGCGCTCAGTCATTATAGGAGTTGGGTTGATGGTCTGTCAACAATTCGGGGGGATCAACGGGGTCTGTTTCTATGTCAGCAGTATCTTTGAGCTAGCAGGATTTTCTTCAAGCATCGGAACTATAACCTATGCTATTCTTCAGGTTGTGGTTACTGGCATTGGTGCAGCTGTAATGGATAAAGCTGGAAGAAAGCCTCTAATTTTGATTTCTGGATCAGGGTTGGTACTTGGCTGTCTCCTGACTGCAATTTCATTCTTTCTGAAGGTTAATGACTTGGCAGTCGGTGCAGTTGGTGCACTTGCTGTAACTGGCATATTGGTCTATATAGGATCATTTTCAATAGGAATGGGAGCAGTTCCTTGGGTTGTGATGTCTGAGATATTCCCAATCAATATTAAAGGACAGGCTGGAAGCTTAGCGACGTTAGTGAACTGGTTTGGAGCATGGTTGTGTTCCTACACTTTCAACTTCCTGATGAGTTGGAGCTCTTATGGCACCTTCATTCTGTATGCAGCAATTAATGGCCTGGGTATAGTGTTTGTGATTTTCTTAGTACCTGAAACAAAGGGGAAAACCCTTGAACAAATCCAAGCAGCCATTAACAAATAG

Protein Analysis

413

Amino Acids

44.32

Weight (kDa)

5.32

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 113 - 408 1.7e-65 Sugar (and other) transporter
MFS_1 PF07690 115 - 357 1e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 908
Acc36I ACCTGC 2 cut(s) 131, 224
AccB1I GGYRCC 1 cut(s) 1124
AccII CGCG 1 cut(s) 631
AciI CCGC 1 cut(s) 551
AclWI GGATC 4 cut(s) 64, 689, 850, 967
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 3 cut(s) 195, 752, 911
AfaI GTAC 2 cut(s) 855, 1185
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 6 cut(s) 497, 617, 738, 969, 1096, 1211
AjnI CCWGG 2 cut(s) 558, 1155
AluBI AGCT 7 cut(s) 62, 245, 721, 797, 812, 1044, 1116
AluI AGCT 7 cut(s) 62, 245, 721, 797, 812, 1044, 1116
Alw21I GWGCWC 2 cut(s) 928, 1118
Alw26I GTCTC 4 cut(s) 156, 202, 459, 869
Alw44I GTGCAC 1 cut(s) 924
AlwI GGATC 4 cut(s) 64, 689, 850, 967
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 6 cut(s) 3, 165, 201, 269, 433, 1153
ApaLI GTGCAC 1 cut(s) 924
ApeKI GCWGC 4 cut(s) 548, 794, 1142, 1223
AseI ATTAAT 2 cut(s) 398, 1149
AspLEI GCGC 1 cut(s) 633
AsuHPI GGTGA 1 cut(s) 533
AsuNHI GCTAGC 2 cut(s) 241, 721
AvaI CYCGRG 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 928
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1124
BanII GRGCYC 2 cut(s) 391, 1118
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
Bbv12I GWGCWC 2 cut(s) 928, 1118
BbvCI CCTCAGC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 560, 806, 1154, 1235
BccI CCATC 6 cut(s) 47, 76, 176, 456, 591, 652
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 2 cut(s) 560, 1157
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 4 cut(s) 156, 202, 459, 869
BfaI CTAG 3 cut(s) 242, 392, 722
BfmI CTRYAG 1 cut(s) 506
BfuAI ACCTGC 2 cut(s) 131, 224
BglII AGATCT 1 cut(s) 178
BisI GCNGC 4 cut(s) 549, 795, 1143, 1224
BlpI GCTNAGC 1 cut(s) 1045
BlsI GCNGC 4 cut(s) 550, 796, 1144, 1225
Bme1390I CCNGG 2 cut(s) 560, 1157
BmeT110I CYCGRG 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 313, 1126
BmrFI CCNGG 2 cut(s) 560, 1157
BmsI GCATC 4 cut(s) 82, 122, 517, 750
BmtI GCTAGC 2 cut(s) 245, 725
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 1045
BpuEI CTTGAG 1 cut(s) 13
BsaAI YACGTR 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 989, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bse1I ACTGG 4 cut(s) 216, 787, 943, 1067
BseBI CCWGG 2 cut(s) 560, 1157
BseDI CCNNGG 2 cut(s) 989, 1156
BseGI GGATG 3 cut(s) 22, 87, 137
BseMII CTCAG 5 cut(s) 106, 150, 249, 648, 996
BseNI ACTGG 4 cut(s) 216, 787, 943, 1067
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 4 cut(s) 560, 806, 1154, 1235
BsgI GTGCAG 3 cut(s) 159, 813, 936
Bsh1236I CGCG 1 cut(s) 631
BshFI GGCC 6 cut(s) 5, 167, 203, 271, 435, 1155
BshNI GGYRCC 1 cut(s) 1124
BsiHKAI GWGCWC 2 cut(s) 928, 1118
BsiHKCI CYCGRG 1 cut(s) 449
BsmAI GTCTC 4 cut(s) 156, 202, 459, 869
BsmBI CGTCTC 1 cut(s) 156
BsnI GGCC 6 cut(s) 5, 167, 203, 271, 435, 1155
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 3 cut(s) 391, 928, 1118
Bsp143I GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
Bsp1720I GCTNAGC 1 cut(s) 1045
BspACI CCGC 1 cut(s) 551
BspANI GGCC 6 cut(s) 5, 167, 203, 271, 435, 1155
BspCNI CTCAG 5 cut(s) 105, 151, 250, 647, 997
BspFNI CGCG 1 cut(s) 631
BspHI TCATGA 2 cut(s) 42, 64
BspLI GGNNCC 2 cut(s) 313, 1126
BspMI ACCTGC 2 cut(s) 131, 224
BspOI GCTAGC 2 cut(s) 245, 725
BspPI GGATC 4 cut(s) 64, 689, 850, 967
BspT107I GGYRCC 1 cut(s) 1124
BsrI ACTGG 4 cut(s) 216, 787, 943, 1067
BssECI CCNNGG 2 cut(s) 989, 1156
BssMI GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
BssT1I CCWWGG 1 cut(s) 989
Bst2UI CCWGG 2 cut(s) 560, 1157
Bst4CI ACNGT 1 cut(s) 213
BstAPI GCANNNNNTGC 2 cut(s) 914, 923
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 3 cut(s) 243, 291, 723
BstDEI CTNAG 8 cut(s) 92, 159, 182, 258, 634, 1005, 1045, 1180
BstF5I GGATG 3 cut(s) 22, 87, 137
BstFNI CGCG 1 cut(s) 631
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 7 cut(s) 59, 181, 336, 426, 684, 845, 962
BstMAI GTCTC 4 cut(s) 156, 202, 459, 869
BstMBI GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
BstMWI GCNNNNNNNGC 3 cut(s) 914, 923, 1122
BstNI CCWGG 2 cut(s) 560, 1157
BstSCI CCNGG 2 cut(s) 558, 1155
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 1 cut(s) 631
BstV1I GCAGC 4 cut(s) 560, 806, 1154, 1235
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 6 cut(s) 5, 167, 203, 271, 435, 1155
BtsCI GGATG 3 cut(s) 22, 87, 137
BtsIMutI CAGTG 2 cut(s) 171, 223
BveI ACCTGC 2 cut(s) 131, 224
Cac8I GCNNGC 3 cut(s) 243, 291, 723
CciI TCATGA 2 cut(s) 42, 64
CfoI GCGC 1 cut(s) 633
Csp6I GTAC 2 cut(s) 854, 1184
CviAII CATG 5 cut(s) 43, 65, 205, 542, 1074
CviQI GTAC 2 cut(s) 854, 1184
DdeI CTNAG 8 cut(s) 92, 159, 182, 258, 634, 1005, 1045, 1180
DpnI GATC 7 cut(s) 58, 180, 335, 425, 683, 844, 961
DpnII GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
DrdI GACNNNNNNGTC 1 cut(s) 908
DseDI GACNNNNNNGTC 1 cut(s) 908
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 1116
Eco130I CCWWGG 1 cut(s) 989
Eco24I GRGCYC 2 cut(s) 391, 1118
Eco53kI GAGCTC 1 cut(s) 1116
Eco57I CTGAAG 3 cut(s) 195, 752, 911
Eco88I CYCGRG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 1116
EcoRII CCWGG 2 cut(s) 558, 1155
EcoT14I CCWWGG 1 cut(s) 989
EcoT38I GRGCYC 2 cut(s) 391, 1118
ErhI CCWWGG 1 cut(s) 989
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 5 cut(s) 46, 68, 208, 545, 1077
FatI CATG 5 cut(s) 42, 64, 204, 541, 1073
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 549, 795, 1143, 1224
FokI GGATG 3 cut(s) 29, 94, 144
FriOI GRGCYC 2 cut(s) 391, 1118
Fsp4HI GCNGC 4 cut(s) 549, 795, 1143, 1224
FspBI CTAG 3 cut(s) 242, 392, 722
GlaI GCGC 1 cut(s) 632
GluI GCNGC 4 cut(s) 549, 795, 1143, 1224
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 6 cut(s) 5, 167, 203, 271, 435, 1155
HhaI GCGC 1 cut(s) 633
Hin1II CATG 5 cut(s) 46, 68, 208, 545, 1077
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 668
HindII GTYRAC 1 cut(s) 668
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 1 cut(s) 452
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 4 cut(s) 88, 668, 926, 1060
Hpy188I TCNGA 3 cut(s) 746, 891, 1006
Hpy188III TCNNGA 9 cut(s) 30, 43, 65, 275, 449, 589, 840, 868, 1102
Hpy8I GTNNAC 4 cut(s) 88, 668, 926, 1060
Hpy99I CGWCG 1 cut(s) 1054
HpyAV CCTTC 3 cut(s) 62, 886, 1138
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 2 cut(s) 324, 1052
HpyCH4V TGCA 8 cut(s) 140, 233, 503, 794, 875, 917, 926, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 914, 923, 1122
HpyF3I CTNAG 8 cut(s) 92, 159, 182, 258, 634, 1005, 1045, 1180
HpySE526I ACGT 2 cut(s) 324, 1052
Hsp92II CATG 5 cut(s) 46, 68, 208, 545, 1077
HspAI GCGC 1 cut(s) 631
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
LmnI GCTCC 4 cut(s) 311, 980, 1070, 1113
Lsp1109I GCAGC 4 cut(s) 560, 806, 1154, 1235
LweI GCATC 4 cut(s) 82, 122, 517, 750
MaeI CTAG 3 cut(s) 242, 392, 722
MaeII ACGT 2 cut(s) 324, 1052
MaeIII GTNAC 2 cut(s) 778, 934
MalI GATC 7 cut(s) 58, 180, 335, 425, 683, 844, 961
MboI GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
MboII GAAGA 5 cut(s) 188, 536, 726, 758, 828
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 3 cut(s) 391, 928, 1118
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 363, 671, 828, 876, 1146
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 2 cut(s) 362, 1091
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 6 cut(s) 329, 398, 897, 1026, 1149, 1230
MslI CAYNNNNRTG 1 cut(s) 1078
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 551, 797
MspR9I CCNGG 2 cut(s) 560, 1157
MvaI CCWGG 2 cut(s) 560, 1157
MvnI CGCG 1 cut(s) 631
MwoI GCNNNNNNNGC 3 cut(s) 914, 923, 1122
NdeII GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
NheI GCTAGC 2 cut(s) 241, 721
NlaIII CATG 5 cut(s) 46, 68, 208, 545, 1077
NlaIV GGNNCC 2 cut(s) 313, 1126
PagI TCATGA 2 cut(s) 42, 64
PfoI TCCNGGA 1 cut(s) 558
PkrI GCNGC 4 cut(s) 550, 796, 1144, 1225
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
Ppu21I YACGTR 1 cut(s) 325
PshBI ATTAAT 2 cut(s) 398, 1149
Psp124BI GAGCTC 1 cut(s) 1118
Psp6I CCWGG 2 cut(s) 558, 1155
PspGI CCWGG 2 cut(s) 558, 1155
PspN4I GGNNCC 2 cut(s) 313, 1126
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 2 cut(s) 855, 1185
RsaNI GTAC 2 cut(s) 854, 1184
RseI CAYNNNNRTG 1 cut(s) 1078
SacI GAGCTC 1 cut(s) 1118
SaqAI TTAA 6 cut(s) 329, 398, 897, 1026, 1149, 1230
SatI GCNGC 4 cut(s) 549, 795, 1143, 1224
Sau3AI GATC 7 cut(s) 56, 178, 333, 423, 681, 842, 959
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 560, 1157
SduI GDGCHC 3 cut(s) 391, 928, 1118
SfaNI GCATC 4 cut(s) 82, 122, 517, 750
SfcI CTRYAG 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 1078
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 5 cut(s) 363, 671, 828, 876, 1146
SsiI CCGC 1 cut(s) 551
SspI AATATT 1 cut(s) 1024
SspMI CTAG 3 cut(s) 242, 392, 722
SstI GAGCTC 1 cut(s) 1118
StyD4I CCNGG 2 cut(s) 558, 1155
StyI CCWWGG 1 cut(s) 989
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 2 cut(s) 327, 1055
TaqI TCGA 1 cut(s) 606
TasI AATT 5 cut(s) 363, 671, 828, 876, 1146
Tru1I TTAA 6 cut(s) 329, 398, 897, 1026, 1149, 1230
Tru9I TTAA 6 cut(s) 329, 398, 897, 1026, 1149, 1230
TscAI CASTG 2 cut(s) 178, 223
TseI GCWGC 4 cut(s) 548, 794, 1142, 1223
TspDTI ATGAA 7 cut(s) 59, 81, 345, 433, 558, 870, 1120
TspGWI ACGGA 2 cut(s) 340, 402
TspRI CASTG 2 cut(s) 178, 223
VneI GTGCAC 1 cut(s) 924
VspI ATTAAT 2 cut(s) 398, 1149
XspI CTAG 3 cut(s) 242, 392, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.