Rw6G029310
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
53404179 .. 53408822
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029310.1

Sequence Viewer

Length: 1452 bp
ATGTTGATCGATACAATACCACTCAGACAAATACATAAGGCAAACATGGCCAGTCGTGAAGAGAATTCTGCACATCATGAGGTAAGAAAGCCACTCGTGGATGGTGGATTGGATCATGGAACCAAAGAGGATCAATGGATGGTGTACATGAGCACATTCGTCGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTGGGTTATTCTTCGCCTACGCAATCAGCCATTAGGGAAGATCTCAATTTATCATTAGCACAGTTTTCAATGTTCGGCGCCATCTTGACATTCGGTGCAATGATAGGTGCTATCACAATTGGGCCGATCACTGATTTTATTGGTCGAAAAGGGGCGTTGAGATTTTCCAGTGTTGTCTGTGTTGCAGGTTGGCTTGCCATTTACTTTTCCAAGGGAGCTTTGCTTCTGGACATTGGGAGAATGGCAAAAGGATATGGAATGGGAGCCTTTTCATACGTGGTACCTATATTTGTTGCTGAAATTGCACCCAAACATCTTCGAGGAAGTCTAACTGCTTTGAATCAGTTGATGATCGTTGCTGGAGTGTCAGTGTCCTTCGTAATTGGGGTAGTAGTAAGTTGGAGGACTTTAGCATTAATTGGACTTATTCCCTGTGCTGTAACCATTTTTGGTCTGTTTTTTATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGAAACCAAAAAGATTTTGAAGATGCACTGCAGACACTTCGTGGCAGAGATGCCGACATATCTGAAGAAGCAGAAGAAATCCAGGATTATATAGCAACTCTTGACCGGCTCCCTAAAGCCAAATTGCTGGATCTGTTTGAAAGGAGATACTCACGCTCTCTCATTATATCAGTTGGCTTGATGATCTGTCAACAATTGGGAGGAATAAACGGGGTCTGTTTCTATGTCAGCAATATTTTTGAGCAAGCAGGATTTTCTTCCAGCTTGGGAACTATAATCTACGCTGTTCTTCAGGTTGTGGTTACTGGCATTGGTGCAGCCATAATGGATAAAGCTGGAAGAAAGCCTCTAATTTTGACTTCTGCAACAGGGTTGTTGCTTGGCTGCGTCCTGACTGCCATTTCATTCTTTCTGAAGGTTCATCAACTGTCAGCCGAGGCAGTTCCGATACTTGCAGTAACTGGCATATTGGTATTCATAGGATCCTTTTCAATAGGAATGGGAGCAGTTCCATGGGTTCTGATGTCAGAGATATTCCCTATAAATATTAAAGGACAGGCAGGAAGCTTTGCAACCCTAGTGAACTGGTTTGGTGCATGGTTGTGCTCCTATACTTTCAACTTTCTTATGAGTTGGAGCTCCTACGGTACCTTTATTCTGTACGCAGTAATCAATGCTCTGGCCATATTGTTCGTGATTGTGATGGTACCTGAGACAAAGGGTAGAACCCTGGAACAAATCCAAGCATCCATTAACAAATAA

Protein Analysis

483

Amino Acids

52.38

Weight (kDa)

7.54

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 68 - 429 5.7e-27 Major Facilitator Superfamily
Sugar_tr PF00083 74 - 478 1.4e-93 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 371
Acc65I GGTACC 3 cut(s) 475, 1337, 1396
AccB1I GGYRCC 4 cut(s) 272, 475, 1337, 1396
AciI CCGC 1 cut(s) 171
AclWI GGATC 5 cut(s) 120, 138, 828, 1167, 1180
AcoI YGGCCR 2 cut(s) 48, 1371
AcsI RAATTY 2 cut(s) 64, 182
AcuI CTGAAG 3 cut(s) 774, 965, 1124
AcyI GRCGYC 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 5 cut(s) 146, 477, 1339, 1352, 1398
AgsI TTSAA 6 cut(s) 264, 535, 710, 830, 1182, 1309
AjnI CCWGG 2 cut(s) 771, 1419
AluBI AGCT 5 cut(s) 413, 954, 1025, 1257, 1329
AluI AGCT 5 cut(s) 413, 954, 1025, 1257, 1329
Alw21I GWGCWC 3 cut(s) 155, 1298, 1331
Alw26I GTCTC 2 cut(s) 672, 1397
AlwI GGATC 5 cut(s) 120, 138, 828, 1167, 1180
AlwNI CAGNNNCTG 1 cut(s) 1151
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 3 cut(s) 48, 317, 1371
ApeKI GCWGC 2 cut(s) 1007, 1074
ApoI RAATTY 2 cut(s) 64, 182
AseI ATTAAT 1 cut(s) 611
Asp718I GGTACC 3 cut(s) 475, 1337, 1396
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 662
BalI TGGCCA 2 cut(s) 50, 1373
BamHI GGATCC 1 cut(s) 1172
BanI GGYRCC 4 cut(s) 272, 475, 1337, 1396
BanII GRGCYC 1 cut(s) 1331
BauI CACGAG 1 cut(s) 95
Bbv12I GWGCWC 3 cut(s) 155, 1298, 1331
BbvI GCAGC 2 cut(s) 1019, 1061
BccI CCATC 5 cut(s) 95, 133, 284, 669, 1387
BcgI CGANNNNNNTGC 4 cut(s) 142, 176, 710, 744
BciT130I CCWGG 2 cut(s) 773, 1421
BcoDI GTCTC 2 cut(s) 672, 1397
BfaI CTAG 1 cut(s) 1268
BfmI CTRYAG 1 cut(s) 719
BfoI RGCGCY 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 371
BglII AGATCT 1 cut(s) 235
BisI GCNGC 3 cut(s) 172, 1008, 1075
BlsI GCNGC 3 cut(s) 173, 1009, 1076
Bme1390I CCNGG 2 cut(s) 773, 1421
BmeT110I CYCGRG 1 cut(s) 662
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 8 cut(s) 121, 274, 460, 477, 800, 1174, 1339, 1398
BmrFI CCNGG 2 cut(s) 773, 1421
BmsI GCATC 4 cut(s) 179, 703, 730, 1445
BpmI CTGGAG 1 cut(s) 576
Bsa29I ATCGAT 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 472
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 4 cut(s) 405, 1125, 1202, 1419
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bse118I RCCGGY 1 cut(s) 795
Bse1I ACTGG 5 cut(s) 51, 363, 1000, 1156, 1280
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 2 cut(s) 773, 1421
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 4 cut(s) 405, 1125, 1202, 1419
BseGI GGATG 4 cut(s) 106, 144, 194, 1436
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 37, 1392
BseNI ACTGG 5 cut(s) 51, 363, 1000, 1156, 1280
BseXI GCAGC 2 cut(s) 1019, 1061
BsgI GTGCAG 2 cut(s) 54, 1026
BshFI GGCC 3 cut(s) 50, 319, 1373
BshNI GGYRCC 4 cut(s) 272, 475, 1337, 1396
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 3 cut(s) 155, 1298, 1331
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 1 cut(s) 796
BsmAI GTCTC 2 cut(s) 672, 1397
BsnI GGCC 3 cut(s) 50, 319, 1373
BsoBI CYCGRG 1 cut(s) 662
Bsp1286I GDGCHC 3 cut(s) 155, 1298, 1331
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
Bsp19I CCATGG 1 cut(s) 1202
BspACI CCGC 1 cut(s) 171
BspANI GGCC 3 cut(s) 50, 319, 1373
BspCNI CTCAG 2 cut(s) 36, 1393
BspDI ATCGAT 1 cut(s) 9
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 8 cut(s) 121, 274, 460, 477, 800, 1174, 1339, 1398
BspMAI CTGCAG 1 cut(s) 723
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 5 cut(s) 120, 138, 828, 1167, 1180
BspT107I GGYRCC 4 cut(s) 272, 475, 1337, 1396
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 795
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 5 cut(s) 51, 363, 1000, 1156, 1280
BssAI RCCGGY 1 cut(s) 795
BssECI CCNNGG 4 cut(s) 405, 1125, 1202, 1419
BssMI GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
BssNI GRCGYC 1 cut(s) 273
BssSI CACGAG 1 cut(s) 95
BssT1I CCWWGG 2 cut(s) 405, 1202
Bst2BI CACGAG 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 773, 1421
Bst4CI ACNGT 3 cut(s) 258, 1119, 1337
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 273
BstAUI TGTACA 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 390, 936
BstDEI CTNAG 2 cut(s) 23, 1401
BstDSI CCRYGG 1 cut(s) 1202
BstF5I GGATG 4 cut(s) 106, 144, 194, 1436
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 9 cut(s) 9, 115, 133, 238, 324, 549, 823, 876, 1175
BstMAI GTCTC 2 cut(s) 672, 1397
BstMBI GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
BstMWI GCNNNNNNNGC 2 cut(s) 47, 497
BstNI CCWGG 2 cut(s) 773, 1421
BstSCI CCNGG 2 cut(s) 771, 1419
BstSFI CTRYAG 1 cut(s) 719
BstV1I GCAGC 2 cut(s) 1019, 1061
BstX2I RGATCY 3 cut(s) 235, 820, 1172
BstXI CCANNNNNNTGG 1 cut(s) 817
BstYI RGATCY 3 cut(s) 235, 820, 1172
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 3 cut(s) 50, 319, 1373
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 1202
BtsCI GGATG 4 cut(s) 106, 144, 194, 1436
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 4 cut(s) 324, 370, 570, 716
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 2 cut(s) 390, 936
CaiI CAGNNNCTG 1 cut(s) 1151
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 1 cut(s) 1066
Csp6I GTAC 5 cut(s) 145, 476, 1338, 1351, 1397
CviAII CATG 6 cut(s) 46, 77, 116, 148, 1203, 1287
CviQI GTAC 5 cut(s) 145, 476, 1338, 1351, 1397
DdeI CTNAG 2 cut(s) 23, 1401
DinI GGCGCC 1 cut(s) 274
DpnI GATC 9 cut(s) 8, 114, 132, 237, 323, 548, 822, 875, 1174
DpnII GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
DraIII CACNNNGTG 1 cut(s) 731
EaeI YGGCCR 2 cut(s) 48, 1371
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 1329
Eco130I CCWWGG 2 cut(s) 405, 1202
Eco24I GRGCYC 1 cut(s) 1331
Eco53kI GAGCTC 1 cut(s) 1329
Eco57I CTGAAG 3 cut(s) 774, 965, 1124
Eco88I CYCGRG 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 1329
EcoRI GAATTC 2 cut(s) 64, 182
EcoRII CCWGG 2 cut(s) 771, 1419
EcoT14I CCWWGG 2 cut(s) 405, 1202
EcoT38I GRGCYC 1 cut(s) 1331
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
ErhI CCWWGG 2 cut(s) 405, 1202
FaeI CATG 6 cut(s) 49, 80, 119, 151, 1206, 1290
FatI CATG 6 cut(s) 45, 76, 115, 147, 1202, 1286
Fnu4HI GCNGC 3 cut(s) 172, 1008, 1075
FokI GGATG 4 cut(s) 113, 151, 201, 1423
FriOI GRGCYC 1 cut(s) 1331
Fsp4HI GCNGC 3 cut(s) 172, 1008, 1075
FspBI CTAG 1 cut(s) 1268
GlaI GCGC 1 cut(s) 274
GluI GCNGC 3 cut(s) 172, 1008, 1075
GsuI CTGGAG 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 3 cut(s) 50, 319, 1373
HapII CCGG 1 cut(s) 796
HgaI GACGC 1 cut(s) 1066
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 6 cut(s) 49, 80, 119, 151, 1206, 1290
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 1 cut(s) 881
HindII GTYRAC 1 cut(s) 881
HindIII AAGCTT 1 cut(s) 1255
HinfI GANTC 2 cut(s) 535, 665
HpaII CCGG 1 cut(s) 796
Hpy166II GTNNAC 3 cut(s) 145, 881, 1273
Hpy188I TCNGA 7 cut(s) 26, 188, 754, 1104, 1137, 1212, 1219
Hpy188III TCNNGA 8 cut(s) 56, 77, 280, 422, 662, 791, 1081, 1384
Hpy8I GTNNAC 3 cut(s) 145, 881, 1273
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 580, 1099
HpyCH4III ACNGT 3 cut(s) 258, 1119, 1337
HpyCH4IV ACGT 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 497
HpyF3I CTNAG 2 cut(s) 23, 1401
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 6 cut(s) 49, 80, 119, 151, 1206, 1290
HspAI GCGC 1 cut(s) 273
KasI GGCGCC 1 cut(s) 272
KpnI GGTACC 3 cut(s) 479, 1341, 1400
Kzo9I GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
LmnI GCTCC 7 cut(s) 410, 458, 804, 1193, 1301, 1326, 1334
Lsp1109I GCAGC 2 cut(s) 1019, 1061
LweI GCATC 4 cut(s) 179, 703, 730, 1445
MaeI CTAG 1 cut(s) 1268
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 3 cut(s) 634, 991, 1147
MalI GATC 9 cut(s) 8, 114, 132, 237, 323, 548, 822, 875, 1174
MboI GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
MfeI CAATTG 2 cut(s) 312, 884
MflI RGATCY 3 cut(s) 235, 820, 1172
MhlI GDGCHC 3 cut(s) 155, 1298, 1331
MlsI TGGCCA 2 cut(s) 50, 1373
MluNI TGGCCA 2 cut(s) 50, 1373
Mly113I GGCGCC 1 cut(s) 273
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 2 cut(s) 575, 1304
MnlI CCTC 7 cut(s) 73, 121, 509, 591, 884, 1047, 1120
Mox20I TGGCCA 2 cut(s) 50, 1373
MscI TGGCCA 2 cut(s) 50, 1373
MseI TTAA 3 cut(s) 611, 1239, 1443
MslI CAYNNNNRTG 1 cut(s) 1291
Msp20I TGGCCA 2 cut(s) 50, 1373
MspI CCGG 1 cut(s) 796
MspR9I CCNGG 2 cut(s) 773, 1421
MunI CAATTG 2 cut(s) 312, 884
MvaI CCWGG 2 cut(s) 773, 1421
MwoI GCNNNNNNNGC 2 cut(s) 47, 497
NarI GGCGCC 1 cut(s) 273
NcoI CCATGG 1 cut(s) 1202
NdeII GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
NlaIII CATG 6 cut(s) 49, 80, 119, 151, 1206, 1290
NlaIV GGNNCC 8 cut(s) 121, 274, 460, 477, 800, 1174, 1339, 1398
NmeAIII GCCGAG 1 cut(s) 1150
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 1 cut(s) 535
PfoI TCCNGGA 1 cut(s) 771
PkrI GCNGC 3 cut(s) 173, 1009, 1076
PleI GAGTC 1 cut(s) 673
PluTI GGCGCC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 673
Ppu21I YACGTR 1 cut(s) 472
PshBI ATTAAT 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 1331
Psp6I CCWGG 2 cut(s) 771, 1419
PspGI CCWGG 2 cut(s) 771, 1419
PspN4I GGNNCC 8 cut(s) 121, 274, 460, 477, 800, 1174, 1339, 1398
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 723
PstNI CAGNNNCTG 1 cut(s) 1151
PsuI RGATCY 3 cut(s) 235, 820, 1172
RsaI GTAC 5 cut(s) 146, 477, 1339, 1352, 1398
RsaNI GTAC 5 cut(s) 145, 476, 1338, 1351, 1397
RseI CAYNNNNRTG 1 cut(s) 1291
SacI GAGCTC 1 cut(s) 1331
SaqAI TTAA 3 cut(s) 611, 1239, 1443
SatI GCNGC 3 cut(s) 172, 1008, 1075
Sau3AI GATC 9 cut(s) 6, 112, 130, 235, 321, 546, 820, 873, 1172
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 2 cut(s) 773, 1421
SduI GDGCHC 3 cut(s) 155, 1298, 1331
SfaNI GCATC 4 cut(s) 179, 703, 730, 1445
SfcI CTRYAG 1 cut(s) 719
SfoI GGCGCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 1291
SsiI CCGC 1 cut(s) 171
SspDI GGCGCC 1 cut(s) 272
SspI AATATT 2 cut(s) 925, 1237
SspMI CTAG 1 cut(s) 1268
SstI GAGCTC 1 cut(s) 1331
StyD4I CCNGG 2 cut(s) 771, 1419
StyI CCWWGG 2 cut(s) 405, 1202
TaaI ACNGT 3 cut(s) 258, 1119, 1337
TaiI ACGT 1 cut(s) 474
TaqI TCGA 3 cut(s) 9, 340, 514
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 3 cut(s) 611, 1239, 1443
Tru9I TTAA 3 cut(s) 611, 1239, 1443
TscAI CASTG 4 cut(s) 331, 370, 570, 723
TseI GCWGC 2 cut(s) 1007, 1074
TspDTI ATGAA 5 cut(s) 195, 456, 1083, 1100, 1156
TspRI CASTG 4 cut(s) 331, 370, 570, 723
VspI ATTAAT 1 cut(s) 611
XapI RAATTY 2 cut(s) 64, 182
XspI CTAG 1 cut(s) 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.