Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

12218556 .. 12222322

Gene Structure 3767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG160000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAGTATTCAATGTTTGGCTCCCTTTTGACATTTGGTGCAATGATTGGTGCTATCACGATTGGTCCCATCGCTGATTTCATTGGTCGAAAAGGGGCCATGAGACTGTCCAGTGCTTTTTGTGTTGCAGGTTGGCTAGCTATATACTTTGCTGAGAGTATTTGGCCTCTTGACAGTGGGAGGCTGGCAAATGGTTATGGAATAGGAGCCTTTTCTTACGTGGTACATGTTTTCATAGCTGAAATTGCTCCAAAAAATCTTCGAGAAAGGCTAACTGCTGCAAATCAGATTCGGTCAAAGATCATTAGGGATTTTGAGTCGCCCAGTTCTCAACCAGCTTATGCACTAACCAACAAGTGGTACACCGTGCACTCCAAGATGCATGTGAGCTTTTCACTTTCATTCAGCAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

9.41

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 97	1.7e-18	Sugar (and other) transporter
MFS_1	PF07690	2 - 94	3.1e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	225, 362
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	4 cut(s)	140, 239, 338, 390
AluI	AGCT	4 cut(s)	140, 239, 338, 390
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	97
Alw44I	GTGCAC	1 cut(s)	368
AoxI	GGCC	2 cut(s)	96, 164
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	65, 96
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	65, 96
BmiI	GGNNCC	4 cut(s)	22, 67, 97, 208
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	369
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	111, 324
Bse3DI	GCAATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	111, 324
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	98, 166
BsiHKAI	GWGCWC	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	98, 166
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	98, 166
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	22, 67, 97, 208
BspMI	ACCTGC	1 cut(s)	119
BspOI	GCTAGC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	111, 324
BssMI	GATC	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	108, 176, 367
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	138, 186
BstDEI	CTNAG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	230, 386
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	98, 166
BtgZI	GCGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	3 cut(s)	118, 181, 415
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	138, 186
Cfr13I	GGNCC	2 cut(s)	65, 96
Csp6I	GTAC	2 cut(s)	224, 361
CviAII	CATG	3 cut(s)	100, 227, 383
CviQI	GTAC	2 cut(s)	224, 361
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	384
FaeI	CATG	3 cut(s)	103, 230, 386
FaiI	YATR	8 cut(s)	101, 143, 145, 198, 228, 236, 342, 384
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	3 cut(s)	99, 226, 382
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	98, 166
Hin1II	CATG	3 cut(s)	103, 230, 386
HinfI	GANTC	2 cut(s)	289, 317
Hpy166II	GTNNAC	2 cut(s)	363, 370
Hpy188I	TCNGA	1 cut(s)	288
Hpy188III	TCNNGA	3 cut(s)	58, 170, 263
Hpy8I	GTNNAC	2 cut(s)	363, 370
HpyCH4III	ACNGT	3 cut(s)	108, 176, 367
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	4, 41, 128, 281, 344, 370, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	103, 230, 386
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	3 cut(s)	26, 206, 253
LpnPI	CCDG	5 cut(s)	114, 124, 170, 337, 348
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	219
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	2 cut(s)	174, 177
Mph1103I	ATGCAT	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	3 cut(s)	103, 230, 386
NlaIV	GGNNCC	4 cut(s)	22, 67, 97, 208
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	2 cut(s)	230, 386
PciI	ACATGT	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	289
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	220
PscI	ACATGT	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	22, 67, 97, 208
PspPI	GGNCC	2 cut(s)	65, 96
RsaI	GTAC	2 cut(s)	225, 362
RsaNI	GTAC	2 cut(s)	224, 361
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	2 cut(s)	65, 96
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	6 cut(s)	133, 142, 222, 241, 340, 392
SfaNI	GCATC	1 cut(s)	369
SinI	GGWCC	1 cut(s)	65
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	108, 176, 367
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	88, 262
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	289
TscAI	CASTG	3 cut(s)	118, 181, 415
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	70, 223, 390
TspRI	CASTG	3 cut(s)	118, 181, 415
Van91I	CCANNNNNTGG	1 cut(s)	357
VneI	GTGCAC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	65
XceI	RCATGY	2 cut(s)	230, 386
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.