Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

55056471 .. 55060441

Gene Structure 3971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCCAGTCGTGAAGAGAATTCTGCACATCATGAGGTAAGAAAGCCACTCGTGGATGGAGGATTGGATCATGGAACCAAAGAGGATCAATGGATGGTGTACATGAGCACATTCGTCGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTGGGTTATTCTTCGCCTACGCAATCAGCCATTAGGGAAGATCTCAATTTATCATTAGCACAGTTTTCAATGTTCGGAGCCATCTTGACATTCGGTGCAATGATAGGTGCTATCACAATCGGGCCGATCACTGATTTTATTGGTCGAAAAGGGGCGTTGAGATTTTCCAGTGTTGTCTGTGTTGCAGGTTGGCTTGCCATTTACTTTTCCAAGGGAGCTTTGCTTCTGGACATTGGGAGAATGGCAAAAGGATATGGAATGGGAGCCTTTTCATACGTGGTACCTATATTTGTTGCTGAAATTGCACCCAAACATCTTCGAGGAAGTCTAACTGCTTTGAATCAGTTGATGATCGTTGCTGGAGTGTCAGTGTCCTTCGTAATTGGGGTAGTAGCAAAGACAGGAAACCAAAAAGATTTTGAAGATGCACTGCAGAAACTTCGTGGCAGAGATGCCAACATATCTCAAGAAGCAGAAGAAATCCAGGATTATATAGCAACTCTTGACCGGCTCCCTAAAGCCAAATTGCTGGATCTGTTTGAAAGGAGATACTCACGCTCTCTCATTATATCAGTTGGCTTGATGATCTGTCAACAATTGGGAGGAATAAACGGGGTCTGTTTCTATGTCAGCAATATTTTTGAGCAAGCAGGATTTTCTTCCAGCTTGGGAACTATAATCTACGCTGTTCTTCAGGTTGTGGTTACTGGCATTGGTGCAGCCATAATGGATAAAGCTGGAAGAAAGCCTCTAATTTTGACTTCTGCAACAGGGTTGTTGCTTGGTTGCGTCCTGACTGCCATTTCATTCTTTCTGAAGGTTCATCAACTGTCAGCCGAGGCAGTTCCCATACTTGCAGTAACTGGCATATTGGTATTCATAGGATCCTTTTCAATAGGAATGGGAGCAGTTCCATGGGTTCTGATGTCAGAGATATTCCCTATAAATATTAAAGGACAGGCAGGAAGCTTTGCAACCCTAGTGAACTGGTTTGGTGCTTGGTTGTGCTCCTATACTTTCAACTTTCTTATGAGTTGGAGCTCCTACGGTACCTTTATTCTGTACGCAATAATCAATGCTCTGGCCATATTGTTCGTGATTGTGATGGTACCTGAGACAAAGGGTAGAACCCTGGAACAAATCCAAGCATCCATTAACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

437

Amino Acids

47.15

Weight (kDa)

7.54

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	53 - 179	1.1e-11	Major Facilitator Superfamily
Sugar_tr	PF00083	59 - 187	1.1e-25	Sugar (and other) transporter
Sugar_tr	PF00083	186 - 432	4.7e-55	Sugar (and other) transporter
MFS_1	PF07690	259 - 426	3.8e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
Acc65I	GGTACC	3 cut(s)	430, 1199, 1258
AccB1I	GGYRCC	3 cut(s)	430, 1199, 1258
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	5 cut(s)	75, 93, 690, 1029, 1042
AcoI	YGGCCR	2 cut(s)	3, 1233
AcsI	RAATTY	2 cut(s)	19, 137
AcuI	CTGAAG	2 cut(s)	827, 986
AfaI	GTAC	5 cut(s)	101, 432, 1201, 1214, 1260
AgsI	TTSAA	6 cut(s)	219, 490, 572, 692, 1044, 1171
AjnI	CCWGG	2 cut(s)	633, 1281
AluBI	AGCT	5 cut(s)	368, 816, 887, 1119, 1191
AluI	AGCT	5 cut(s)	368, 816, 887, 1119, 1191
Alw21I	GWGCWC	3 cut(s)	110, 1160, 1193
Alw26I	GTCTC	1 cut(s)	1259
AlwI	GGATC	5 cut(s)	75, 93, 690, 1029, 1042
AlwNI	CAGNNNCTG	1 cut(s)	1013
AoxI	GGCC	3 cut(s)	3, 272, 1233
ApeKI	GCWGC	1 cut(s)	869
ApoI	RAATTY	2 cut(s)	19, 137
Asp718I	GGTACC	3 cut(s)	430, 1199, 1258
AspS9I	GGNCC	1 cut(s)	272
BalI	TGGCCA	2 cut(s)	5, 1235
BamHI	GGATCC	1 cut(s)	1034
BanI	GGYRCC	3 cut(s)	430, 1199, 1258
BanII	GRGCYC	1 cut(s)	1193
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	3 cut(s)	110, 1160, 1193
BbvI	GCAGC	1 cut(s)	881
BccI	CCATC	4 cut(s)	50, 88, 239, 1249
BcgI	CGANNNNNNTGC	4 cut(s)	97, 131, 572, 606
BciT130I	CCWGG	2 cut(s)	635, 1283
BcoDI	GTCTC	1 cut(s)	1259
BfaI	CTAG	1 cut(s)	1130
BfmI	CTRYAG	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	2 cut(s)	127, 870
BlsI	GCNGC	2 cut(s)	128, 871
Bme1390I	CCNGG	2 cut(s)	635, 1283
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	8 cut(s)	76, 229, 415, 432, 662, 1036, 1201, 1260
BmrFI	CCNGG	2 cut(s)	635, 1283
BmsI	GCATC	4 cut(s)	134, 565, 592, 1307
BpmI	CTGGAG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	427
BsaJI	CCNNGG	4 cut(s)	360, 987, 1064, 1281
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	5 cut(s)	6, 318, 862, 1018, 1142
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	635, 1283
BseDI	CCNNGG	4 cut(s)	360, 987, 1064, 1281
BseGI	GGATG	4 cut(s)	61, 99, 149, 1298
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	1254
BseNI	ACTGG	5 cut(s)	6, 318, 862, 1018, 1142
BseXI	GCAGC	1 cut(s)	881
BsgI	GTGCAG	2 cut(s)	9, 888
BshFI	GGCC	3 cut(s)	5, 274, 1235
BshNI	GGYRCC	3 cut(s)	430, 1199, 1258
BsiHKAI	GWGCWC	3 cut(s)	110, 1160, 1193
BsiSI	CCGG	1 cut(s)	658
BsmAI	GTCTC	1 cut(s)	1259
BsnI	GGCC	3 cut(s)	5, 274, 1235
Bsp1286I	GDGCHC	3 cut(s)	110, 1160, 1193
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
Bsp19I	CCATGG	1 cut(s)	1064
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	3 cut(s)	5, 274, 1235
BspCNI	CTCAG	1 cut(s)	1255
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	8 cut(s)	76, 229, 415, 432, 662, 1036, 1201, 1260
BspMAI	CTGCAG	1 cut(s)	585
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	5 cut(s)	75, 93, 690, 1029, 1042
BspT107I	GGYRCC	3 cut(s)	430, 1199, 1258
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	5 cut(s)	6, 318, 862, 1018, 1142
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	4 cut(s)	360, 987, 1064, 1281
BssMI	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	2 cut(s)	360, 1064
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	635, 1283
Bst4CI	ACNGT	3 cut(s)	213, 981, 1199
Bst6I	CTCTTC	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	345, 798
BstDEI	CTNAG	1 cut(s)	1263
BstDSI	CCRYGG	1 cut(s)	1064
BstF5I	GGATG	4 cut(s)	61, 99, 149, 1298
BstKTI	GATC	8 cut(s)	70, 88, 193, 279, 504, 685, 738, 1037
BstMAI	GTCTC	1 cut(s)	1259
BstMBI	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	2 cut(s)	635, 1283
BstSCI	CCNGG	2 cut(s)	633, 1281
BstSFI	CTRYAG	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	881
BstX2I	RGATCY	3 cut(s)	190, 682, 1034
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	3 cut(s)	190, 682, 1034
BsuRI	GGCC	3 cut(s)	5, 274, 1235
BtgI	CCRYGG	1 cut(s)	1064
BtsCI	GGATG	4 cut(s)	61, 99, 149, 1298
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	4 cut(s)	279, 325, 525, 578
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	345, 798
CaiI	CAGNNNCTG	1 cut(s)	1013
CciI	TCATGA	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	928
Csp6I	GTAC	5 cut(s)	100, 431, 1200, 1213, 1259
CviAII	CATG	4 cut(s)	32, 71, 103, 1065
CviQI	GTAC	5 cut(s)	100, 431, 1200, 1213, 1259
DdeI	CTNAG	1 cut(s)	1263
DpnI	GATC	8 cut(s)	69, 87, 192, 278, 503, 684, 737, 1036
DpnII	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
EaeI	YGGCCR	2 cut(s)	3, 1233
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	1191
Eco130I	CCWWGG	2 cut(s)	360, 1064
Eco24I	GRGCYC	1 cut(s)	1193
Eco53kI	GAGCTC	1 cut(s)	1191
Eco57I	CTGAAG	2 cut(s)	827, 986
EcoICRI	GAGCTC	1 cut(s)	1191
EcoRI	GAATTC	2 cut(s)	19, 137
EcoRII	CCWGG	2 cut(s)	633, 1281
EcoT14I	CCWWGG	2 cut(s)	360, 1064
EcoT38I	GRGCYC	1 cut(s)	1193
ErhI	CCWWGG	2 cut(s)	360, 1064
FaeI	CATG	4 cut(s)	35, 74, 106, 1068
FatI	CATG	4 cut(s)	31, 70, 102, 1064
Fnu4HI	GCNGC	2 cut(s)	127, 870
FokI	GGATG	4 cut(s)	68, 106, 156, 1285
FriOI	GRGCYC	1 cut(s)	1193
Fsp4HI	GCNGC	2 cut(s)	127, 870
FspBI	CTAG	1 cut(s)	1130
GluI	GCNGC	2 cut(s)	127, 870
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	5, 274, 1235
HapII	CCGG	1 cut(s)	658
HgaI	GACGC	1 cut(s)	928
Hin1II	CATG	4 cut(s)	35, 74, 106, 1068
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	1117
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	1 cut(s)	658
Hpy166II	GTNNAC	3 cut(s)	100, 743, 1135
Hpy188I	TCNGA	5 cut(s)	143, 227, 966, 1074, 1081
Hpy188III	TCNNGA	8 cut(s)	11, 32, 235, 377, 617, 653, 943, 1246
Hpy8I	GTNNAC	3 cut(s)	100, 743, 1135
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	535, 961
HpyCH4III	ACNGT	3 cut(s)	213, 981, 1199
HpyCH4IV	ACGT	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	1263
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	35, 74, 106, 1068
KpnI	GGTACC	3 cut(s)	434, 1203, 1262
Kzo9I	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
LmnI	GCTCC	8 cut(s)	227, 365, 413, 666, 1055, 1163, 1188, 1196
Lsp1109I	GCAGC	1 cut(s)	881
LweI	GCATC	4 cut(s)	134, 565, 592, 1307
MaeI	CTAG	1 cut(s)	1130
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	2 cut(s)	853, 1009
MalI	GATC	8 cut(s)	69, 87, 192, 278, 503, 684, 737, 1036
MboI	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
MboII	GAAGA	9 cut(s)	26, 153, 200, 458, 584, 638, 801, 833, 903
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	3 cut(s)	190, 682, 1034
MhlI	GDGCHC	3 cut(s)	110, 1160, 1193
MlsI	TGGCCA	2 cut(s)	5, 1235
MluCI	AATT	8 cut(s)	19, 137, 196, 450, 531, 674, 746, 903
MluNI	TGGCCA	2 cut(s)	5, 1235
MmeI	TCCRAC	1 cut(s)	1166
MnlI	CCTC	7 cut(s)	28, 53, 76, 464, 746, 909, 982
Mox20I	TGGCCA	2 cut(s)	5, 1235
MscI	TGGCCA	2 cut(s)	5, 1235
MseI	TTAA	2 cut(s)	1101, 1305
Msp20I	TGGCCA	2 cut(s)	5, 1235
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	2 cut(s)	635, 1283
MunI	CAATTG	1 cut(s)	746
MvaI	CCWGG	2 cut(s)	635, 1283
MwoI	GCNNNNNNNGC	1 cut(s)	452
NcoI	CCATGG	1 cut(s)	1064
NdeII	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
NlaIII	CATG	4 cut(s)	35, 74, 106, 1068
NlaIV	GGNNCC	8 cut(s)	76, 229, 415, 432, 662, 1036, 1201, 1260
NmeAIII	GCCGAG	1 cut(s)	1012
PagI	TCATGA	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	490
PfoI	TCCNGGA	1 cut(s)	633
PkrI	GCNGC	2 cut(s)	128, 871
Ppu21I	YACGTR	1 cut(s)	427
Psp124BI	GAGCTC	1 cut(s)	1193
Psp6I	CCWGG	2 cut(s)	633, 1281
PspGI	CCWGG	2 cut(s)	633, 1281
PspN4I	GGNNCC	8 cut(s)	76, 229, 415, 432, 662, 1036, 1201, 1260
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	585
PstNI	CAGNNNCTG	1 cut(s)	1013
PsuI	RGATCY	3 cut(s)	190, 682, 1034
RsaI	GTAC	5 cut(s)	101, 432, 1201, 1214, 1260
RsaNI	GTAC	5 cut(s)	100, 431, 1200, 1213, 1259
SacI	GAGCTC	1 cut(s)	1193
SaqAI	TTAA	2 cut(s)	1101, 1305
SatI	GCNGC	2 cut(s)	127, 870
Sau3AI	GATC	8 cut(s)	67, 85, 190, 276, 501, 682, 735, 1034
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	635, 1283
SduI	GDGCHC	3 cut(s)	110, 1160, 1193
SfaNI	GCATC	4 cut(s)	134, 565, 592, 1307
SfcI	CTRYAG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
Sse9I	AATT	8 cut(s)	19, 137, 196, 450, 531, 674, 746, 903
SsiI	CCGC	1 cut(s)	126
SspI	AATATT	2 cut(s)	787, 1099
SspMI	CTAG	1 cut(s)	1130
SstI	GAGCTC	1 cut(s)	1193
StyD4I	CCNGG	2 cut(s)	633, 1281
StyI	CCWWGG	2 cut(s)	360, 1064
TaaI	ACNGT	3 cut(s)	213, 981, 1199
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	295, 469
TasI	AATT	8 cut(s)	19, 137, 196, 450, 531, 674, 746, 903
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	1101, 1305
Tru9I	TTAA	2 cut(s)	1101, 1305
TscAI	CASTG	4 cut(s)	286, 325, 525, 585
TseI	GCWGC	1 cut(s)	869
TspDTI	ATGAA	5 cut(s)	150, 411, 945, 962, 1018
TspRI	CASTG	4 cut(s)	286, 325, 525, 585
XapI	RAATTY	2 cut(s)	19, 137
XspI	CTAG	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.