Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452453.1

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

35 .. 1722

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

agcatattttctggttctgacactctttgtggcttccaggcaggtttttcgtctcctactcaggacgccatcactgaagatcttagtttgtcattagcagagtattcaatgtttggctcccttttgacatttggtgcaatgattggtgctatcacgattggtcccatcgctgatttcattggtcgaaaaggggccatgagactgtccagtgctttatgtgttgcaggttggctagctatatactttgctgagagtatttggcctcttgacattgggaggctggcaaatggttatggaatgggagccttttcttacgtggtacctgttttcatagctgaaattgctccaaaaaatcttcgaggaaggctaactgctgcaaatcagttaatgatctgtgctggagtgtccgtttcatacataattgggatagtagtgagttggagggctctagcattaataggacttattccgtgtgctgtgatcattttcggcctctttttcattcccgagtctccaagatggttggcaaagacaggaaaacacacagagtttgaagttgcactacagaaacttcgtggtgaagatgctgatgtatcgcatgaagcagcggaaatccaggttcttattcatcttcctaatatccacattgaagatacgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

220

Amino Acids

23.57

Weight (kDa)

5.13

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	32, 215
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	319
AciI	CCGC	1 cut(s)	608
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	108, 554, 650
AjnI	CCWGG	2 cut(s)	36, 615
AluBI	AGCT	2 cut(s)	236, 335
AluI	AGCT	2 cut(s)	236, 335
Alw26I	GTCTC	3 cut(s)	57, 193, 516
Ama87I	CYCGRG	1 cut(s)	506
AoxI	GGCC	3 cut(s)	192, 260, 490
ApeKI	GCWGC	2 cut(s)	374, 605
AseI	ATTAAT	1 cut(s)	455
Asp718I	GGTACC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	161, 192
AsuHPI	GGTGA	1 cut(s)	590
AsuNHI	GCTAGC	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
BbvI	GCAGC	2 cut(s)	361, 617
BccI	CCATC	3 cut(s)	77, 173, 513
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	2 cut(s)	38, 617
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	57, 193, 516
BfaI	CTAG	2 cut(s)	233, 449
BfmI	CTRYAG	1 cut(s)	563
BfuAI	ACCTGC	2 cut(s)	32, 215
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	375, 606
BlsI	GCNGC	2 cut(s)	376, 607
Bme1390I	CCNGG	2 cut(s)	38, 617
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	161, 192
BmiI	GGNNCC	5 cut(s)	118, 163, 193, 304, 321
BmrFI	CCNGG	2 cut(s)	38, 617
BmsI	GCATC	1 cut(s)	574
BmtI	GCTAGC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	38, 617
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	74, 240
BseNI	ACTGG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	361, 617
BshFI	GGCC	3 cut(s)	194, 262, 492
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	3 cut(s)	57, 193, 516
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	194, 262, 492
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	79, 390, 480
BspACI	CCGC	1 cut(s)	608
BspANI	GGCC	3 cut(s)	194, 262, 492
BspCNI	CTCAG	2 cut(s)	73, 241
BspLI	GGNNCC	5 cut(s)	118, 163, 193, 304, 321
BspMI	ACCTGC	2 cut(s)	32, 215
BspOI	GCTAGC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	79, 390, 480
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	38, 617
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	234, 282
BstDEI	CTNAG	3 cut(s)	60, 83, 249
BstKTI	GATC	3 cut(s)	82, 393, 483
BstMAI	GTCTC	3 cut(s)	57, 193, 516
BstMBI	GATC	3 cut(s)	79, 390, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	2 cut(s)	38, 617
BstSCI	CCNGG	2 cut(s)	36, 615
BstSFI	CTRYAG	1 cut(s)	563
BstV1I	GCAGC	2 cut(s)	361, 617
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	194, 262, 492
BtgZI	GCGATG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	72, 214
BveI	ACCTGC	2 cut(s)	32, 215
Cac8I	GCNNGC	2 cut(s)	234, 282
Cfr13I	GGNCC	2 cut(s)	161, 192
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	2 cut(s)	196, 599
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	60, 83, 249
DpnI	GATC	3 cut(s)	81, 392, 482
DpnII	GATC	3 cut(s)	79, 390, 480
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	36, 615
EcoT38I	GRGCYC	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	199, 602
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	2 cut(s)	195, 598
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	2 cut(s)	375, 606
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	375, 606
FspBI	CTAG	2 cut(s)	233, 449
GluI	GCNGC	2 cut(s)	375, 606
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	194, 262, 492
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	199, 602
HinfI	GANTC	1 cut(s)	509
HphI	GGTGA	1 cut(s)	590
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	4 cut(s)	62, 154, 266, 506
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	2 cut(s)	315, 656
HpyCH4V	TGCA	4 cut(s)	137, 224, 377, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	3 cut(s)	60, 83, 249
HpySE526I	ACGT	2 cut(s)	315, 656
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	199, 602
KpnI	GGTACC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	79, 390, 480
LmnI	GCTCC	3 cut(s)	122, 302, 349
Lsp1109I	GCAGC	2 cut(s)	361, 617
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	2 cut(s)	233, 449
MaeII	ACGT	2 cut(s)	315, 656
MalI	GATC	3 cut(s)	81, 392, 482
MboI	GATC	3 cut(s)	79, 390, 480
MboII	GAAGA	5 cut(s)	89, 347, 593, 623, 662
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	2 cut(s)	339, 420
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	5 cut(s)	270, 273, 353, 435, 503
MseI	TTAA	2 cut(s)	386, 455
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	38, 617
MvaI	CCWGG	2 cut(s)	38, 617
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	3 cut(s)	79, 390, 480
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	199, 602
NlaIV	GGNNCC	5 cut(s)	118, 163, 193, 304, 321
PkrI	GCNGC	2 cut(s)	376, 607
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	316
PshBI	ATTAAT	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	36, 615
PspGI	CCWGG	2 cut(s)	36, 615
PspN4I	GGNNCC	5 cut(s)	118, 163, 193, 304, 321
PspPI	GGNCC	2 cut(s)	161, 192
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	386, 455
SatI	GCNGC	2 cut(s)	375, 606
Sau3AI	GATC	3 cut(s)	79, 390, 480
Sau96I	GGNCC	2 cut(s)	161, 192
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	38, 617
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	8 cut(s)	46, 229, 238, 318, 325, 337, 621, 659
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	2 cut(s)	339, 420
SsiI	CCGC	1 cut(s)	608
SspMI	CTAG	2 cut(s)	233, 449
StyD4I	CCNGG	2 cut(s)	36, 615
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	2 cut(s)	318, 659
TaqI	TCGA	2 cut(s)	184, 358
TasI	AATT	2 cut(s)	339, 420
Tru1I	TTAA	2 cut(s)	386, 455
Tru9I	TTAA	2 cut(s)	386, 455
TscAI	CASTG	2 cut(s)	79, 214
TseI	GCWGC	2 cut(s)	374, 605
TspDTI	ATGAA	6 cut(s)	166, 319, 402, 490, 615, 617
TspGWI	ACGGA	2 cut(s)	397, 459
TspRI	CASTG	2 cut(s)	79, 214
VpaK11BI	GGWCC	1 cut(s)	161
VspI	ATTAAT	1 cut(s)	455
XspI	CTAG	2 cut(s)	233, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.