FvH4_2g24260
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
19819035 .. 19823390
4356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24260.t1

Sequence Viewer

Length: 1407 bp
ATGGCCAGTCGTGAAGAGAATTCTGCACATCATGAGGTAAAAAGGCCACTCGTAGATGGTGGATTGGATCATGGAAGCAAAGGGGATCAATGGATGGTTTACCTTAGCACATTTGTTGCAGTTTGCGGTTCTTATGAATTTGGATGCTGTGTGGGTTATTCATCGCCTACGCAATCAGCCATTAGGGAAGATCTCAATTTAACATTAGCACAGTTTGCAATGTTCGGTTCCATCTTGACATTTGGTGCAATGATAGGTGCTATCACAATTGGGCCGATCACTGATTTTATTGGTCGAAAAGGGGCGTTGAGATTTTCCAGTATTGTTTGTCTTGCAGGATGGCTTGCCATCTACTTTTCCGAGGGAGCTGTGGTTTTGGACATCGGGAGAATGGCAAAAGGATATGGAATGGGAGCCTTTTCATACGTGGTACCTGTTTTTGTTGCTGAAATTGCACCCAAACATCTTCGAGGAACTCTAACGGCTTTGAATCAGTTAATGATTGTTGCTGGAGTGTCAGTGTCCTTCATAATTGGGGTAGTAGTAAGCTGGAGGACTTTAGCATTAATTGGACTCGTTCCCTGCGCTGTGACCATTTTCGGTCTATTTTTCATTCCGGAGTCTCCAAGATGGTTGGCAAAGACAGGAAACCAAAAAGATTTTGAAGATGCACTGCAGAAACTTCGCGGCAGAGATGCTGACATATCTAAAGAAGCAGAAGAAATCCAGGATTATATAGCAACTCTTGACCGGCTTCCTAAAGCCAAATTGCTGGACCTATTCGAGAGGAGATACTCACGCTCTCTCATTATATCAGTTGGCTTAATGATCTGTCAACAATTGGGAGGAATCAATGGGGTCTGTTTCTATGTCAGCAATATTCTTGAGCAAGCAGGGTTTTCTCCCAGCATGGGAACTATAATCTACGCTGTTCTTCAGGTTGTGGTTACTGCCATAGGTGCAGCCATAATGGATAAAGCAGGAAGAAAGCCTCTTATTTTGATTTCTGCAACAGGTCTGTTACTTGGCTGCAGCCTGACTGCCATATCATTCTTTATAAAGGTTCATCAACTGTCACCCAAGGCAGTTCCCATACTTGCTGTAACCGGCATACTGGTATTCATAGGTTCCTTTTCGATAGGAATGGGAGCAGTTCCATGGGTTATAATGTCAGAGATTTTCCCTATAAATATTAAAGGACAGGCAGGAAGCTTTGCAACTCTAGTGAACTGGTTTGGTGCATGGTTGTGCTCCTATACTTTCAACTTTCTTATGACTTGGAGCTCCTACGGTACCTTTATTCTGTACGCAGTGATCAATGTTCTGGCCATAATATTCATAGTTGTGATGGTACCTGAGACAAAGGGTAGAACCCTGGAACAAATCCAAGCATCCATTAACAAGTAA

Protein Analysis

469

Amino Acids

50.65

Weight (kDa)

8.49

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 53 - 413 2e-27 Major Facilitator Superfamily
Sugar_tr PF00083 68 - 463 3.2e-93 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1058, 1166
Acc65I GGTACC 3 cut(s) 430, 1292, 1351
AccB1I GGYRCC 3 cut(s) 430, 1292, 1351
AccII CGCG 1 cut(s) 687
AccIII TCCGGA 1 cut(s) 616
AciI CCGC 2 cut(s) 126, 687
AclWI GGATC 2 cut(s) 75, 93
AcoI YGGCCR 2 cut(s) 3, 1326
AcsI RAATTY 2 cut(s) 19, 137
AcuI CTGAAG 1 cut(s) 920
AfaI GTAC 4 cut(s) 432, 1294, 1307, 1353
AfiI CCNNNNNNNGG 1 cut(s) 911
AgsI TTSAA 3 cut(s) 490, 665, 1264
AjnI CCWGG 2 cut(s) 726, 1374
AluBI AGCT 4 cut(s) 368, 549, 1212, 1284
AluI AGCT 4 cut(s) 368, 549, 1212, 1284
Alw21I GWGCWC 2 cut(s) 1253, 1286
Alw26I GTCTC 2 cut(s) 627, 1352
AlwI GGATC 2 cut(s) 75, 93
Aor13HI TCCGGA 1 cut(s) 616
AoxI GGCC 4 cut(s) 3, 44, 272, 1326
ApeKI GCWGC 3 cut(s) 962, 1029, 1032
ApoI RAATTY 2 cut(s) 19, 137
AseI ATTAAT 1 cut(s) 566
Asp718I GGTACC 3 cut(s) 430, 1292, 1351
AspLEI GCGC 1 cut(s) 587
AspS9I GGNCC 2 cut(s) 272, 775
AsuHPI GGTGA 1 cut(s) 1068
AvaII GGWCC 1 cut(s) 775
BalI TGGCCA 2 cut(s) 5, 1328
BanI GGYRCC 3 cut(s) 430, 1292, 1351
BanII GRGCYC 1 cut(s) 1286
Bbv12I GWGCWC 2 cut(s) 1253, 1286
BbvI GCAGC 3 cut(s) 974, 1016, 1044
BccI CCATC 7 cut(s) 50, 88, 239, 333, 356, 624, 1342
BceAI ACGGC 1 cut(s) 498
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 2 cut(s) 728, 1376
BclI TGATCA 1 cut(s) 1314
BcoDI GTCTC 2 cut(s) 627, 1352
BfaI CTAG 1 cut(s) 1223
BfmI CTRYAG 2 cut(s) 674, 1030
BglII AGATCT 1 cut(s) 190
BisI GCNGC 4 cut(s) 688, 963, 1030, 1033
BlsI GCNGC 4 cut(s) 689, 964, 1031, 1034
Bme1390I CCNGG 2 cut(s) 728, 1376
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 272, 775
BmiI GGNNCC 6 cut(s) 229, 415, 432, 1129, 1294, 1353
BmrFI CCNGG 2 cut(s) 728, 1376
BmsI GCATC 4 cut(s) 134, 658, 685, 1400
BpmI CTGGAG 2 cut(s) 531, 571
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 905
BsaAI YACGTR 1 cut(s) 427
BsaJI CCNNGG 4 cut(s) 360, 1080, 1157, 1374
BsaWI WCCGGW 1 cut(s) 616
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 911
Bse118I RCCGGY 2 cut(s) 750, 1106
Bse1I ACTGG 4 cut(s) 6, 318, 1119, 1235
Bse3DI GCAATG 2 cut(s) 225, 255
BseAI TCCGGA 1 cut(s) 616
BseBI CCWGG 2 cut(s) 728, 1376
BseDI CCNNGG 4 cut(s) 360, 1080, 1157, 1374
BseGI GGATG 4 cut(s) 99, 149, 344, 1391
BseLI CCNNNNNNNGG 1 cut(s) 911
BseMI GCAATG 2 cut(s) 225, 255
BseMII CTCAG 1 cut(s) 1347
BseNI ACTGG 4 cut(s) 6, 318, 1119, 1235
BseRI GAGGAG 1 cut(s) 802
BseXI GCAGC 3 cut(s) 974, 1016, 1044
BseYI CCCAGC 1 cut(s) 905
BsgI GTGCAG 2 cut(s) 9, 981
Bsh1236I CGCG 1 cut(s) 687
BshFI GGCC 4 cut(s) 5, 46, 274, 1328
BshNI GGYRCC 3 cut(s) 430, 1292, 1351
BsiHKAI GWGCWC 2 cut(s) 1253, 1286
BsiSI CCGG 3 cut(s) 617, 751, 1107
BslI CCNNNNNNNGG 1 cut(s) 911
BsmAI GTCTC 2 cut(s) 627, 1352
BsnI GGCC 4 cut(s) 5, 46, 274, 1328
Bsp1286I GDGCHC 2 cut(s) 1253, 1286
Bsp13I TCCGGA 1 cut(s) 616
Bsp143I GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
Bsp19I CCATGG 1 cut(s) 1157
BspACI CCGC 2 cut(s) 126, 687
BspANI GGCC 4 cut(s) 5, 46, 274, 1328
BspCNI CTCAG 1 cut(s) 1348
BspEI TCCGGA 1 cut(s) 616
BspFNI CGCG 1 cut(s) 687
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 6 cut(s) 229, 415, 432, 1129, 1294, 1353
BspMAI CTGCAG 2 cut(s) 678, 1034
BspPI GGATC 2 cut(s) 75, 93
BspT107I GGYRCC 3 cut(s) 430, 1292, 1351
BsrDI GCAATG 2 cut(s) 225, 255
BsrFI RCCGGY 2 cut(s) 750, 1106
BsrI ACTGG 4 cut(s) 6, 318, 1119, 1235
BssAI RCCGGY 2 cut(s) 750, 1106
BssECI CCNNGG 4 cut(s) 360, 1080, 1157, 1374
BssMI GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
BssT1I CCWWGG 2 cut(s) 1080, 1157
Bst2UI CCWGG 2 cut(s) 728, 1376
Bst4CI ACNGT 3 cut(s) 213, 1074, 1292
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 345, 891
BstDEI CTNAG 2 cut(s) 104, 1356
BstDSI CCRYGG 1 cut(s) 1157
BstF5I GGATG 4 cut(s) 99, 149, 344, 1391
BstFNI CGCG 1 cut(s) 687
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 6 cut(s) 70, 88, 193, 279, 831, 1317
BstMAI GTCTC 2 cut(s) 627, 1352
BstMBI GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
BstMWI GCNNNNNNNGC 3 cut(s) 215, 452, 959
BstNI CCWGG 2 cut(s) 728, 1376
BstSCI CCNGG 2 cut(s) 726, 1374
BstSFI CTRYAG 2 cut(s) 674, 1030
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 3 cut(s) 974, 1016, 1044
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 772
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 4 cut(s) 5, 46, 274, 1328
BtgI CCRYGG 1 cut(s) 1157
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 4 cut(s) 99, 149, 344, 1391
BtsI GCAGTG 2 cut(s) 671, 1317
BtsIMutI CAGTG 4 cut(s) 279, 525, 671, 1317
Cac8I GCNNGC 2 cut(s) 345, 891
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 587
Cfr10I RCCGGY 2 cut(s) 750, 1106
Cfr13I GGNCC 2 cut(s) 272, 775
Csp6I GTAC 4 cut(s) 431, 1293, 1306, 1352
CviAII CATG 5 cut(s) 32, 71, 910, 1158, 1242
CviQI GTAC 4 cut(s) 431, 1293, 1306, 1352
DdeI CTNAG 2 cut(s) 104, 1356
DpnI GATC 6 cut(s) 69, 87, 192, 278, 830, 1316
DpnII GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
EaeI YGGCCR 2 cut(s) 3, 1326
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 1284
Eco130I CCWWGG 2 cut(s) 1080, 1157
Eco24I GRGCYC 1 cut(s) 1286
Eco47I GGWCC 1 cut(s) 775
Eco53kI GAGCTC 1 cut(s) 1284
Eco57I CTGAAG 1 cut(s) 920
EcoICRI GAGCTC 1 cut(s) 1284
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 726, 1374
EcoT14I CCWWGG 2 cut(s) 1080, 1157
EcoT38I GRGCYC 1 cut(s) 1286
ErhI CCWWGG 2 cut(s) 1080, 1157
FaeI CATG 5 cut(s) 35, 74, 913, 1161, 1245
FatI CATG 5 cut(s) 31, 70, 909, 1157, 1241
FbaI TGATCA 1 cut(s) 1314
Fnu4HI GCNGC 4 cut(s) 688, 963, 1030, 1033
FokI GGATG 4 cut(s) 106, 156, 351, 1378
FriOI GRGCYC 1 cut(s) 1286
Fsp4HI GCNGC 4 cut(s) 688, 963, 1030, 1033
FspBI CTAG 1 cut(s) 1223
GlaI GCGC 1 cut(s) 586
GluI GCNGC 4 cut(s) 688, 963, 1030, 1033
GsaI CCCAGC 1 cut(s) 909
GsuI CTGGAG 2 cut(s) 531, 571
HaeIII GGCC 4 cut(s) 5, 46, 274, 1328
HapII CCGG 3 cut(s) 617, 751, 1107
HhaI GCGC 1 cut(s) 587
Hin1II CATG 5 cut(s) 35, 74, 913, 1161, 1245
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 836
HindII GTYRAC 1 cut(s) 836
HindIII AAGCTT 1 cut(s) 1210
HinfI GANTC 4 cut(s) 490, 573, 620, 849
HpaII CCGG 3 cut(s) 617, 751, 1107
HphI GGTGA 1 cut(s) 1068
Hpy166II GTNNAC 3 cut(s) 100, 836, 1228
Hpy188I TCNGA 2 cut(s) 361, 1174
Hpy188III TCNNGA 8 cut(s) 11, 32, 235, 385, 617, 746, 784, 884
Hpy8I GTNNAC 3 cut(s) 100, 836, 1228
HpyAV CCTTC 1 cut(s) 535
HpyCH4III ACNGT 3 cut(s) 213, 1074, 1292
HpyCH4IV ACGT 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 452, 959
HpyF3I CTNAG 2 cut(s) 104, 1356
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 5 cut(s) 35, 74, 913, 1161, 1245
HspAI GCGC 1 cut(s) 585
Kpn2I TCCGGA 1 cut(s) 616
KpnI GGTACC 3 cut(s) 434, 1296, 1355
Ksp22I TGATCA 1 cut(s) 1314
Kzo9I GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
LmnI GCTCC 6 cut(s) 365, 413, 1148, 1256, 1281, 1289
Lsp1109I GCAGC 3 cut(s) 974, 1016, 1044
LweI GCATC 4 cut(s) 134, 658, 685, 1400
MaeI CTAG 1 cut(s) 1223
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 5 cut(s) 589, 946, 1020, 1074, 1102
MalI GATC 6 cut(s) 69, 87, 192, 278, 830, 1316
MboI GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
MboII GAAGA 7 cut(s) 26, 200, 458, 677, 731, 926, 996
MfeI CAATTG 2 cut(s) 267, 839
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 1253, 1286
MlsI TGGCCA 2 cut(s) 5, 1328
MluCI AATT 9 cut(s) 19, 137, 196, 267, 450, 531, 567, 767, 839
MluNI TGGCCA 2 cut(s) 5, 1328
MlyI GAGTC 2 cut(s) 567, 629
MnlI CCTC 7 cut(s) 28, 355, 464, 546, 780, 839, 1002
Mox20I TGGCCA 2 cut(s) 5, 1328
MroI TCCGGA 1 cut(s) 616
MscI TGGCCA 2 cut(s) 5, 1328
MseI TTAA 6 cut(s) 200, 497, 566, 824, 1194, 1398
MslI CAYNNNNRTG 2 cut(s) 1246, 1343
Msp20I TGGCCA 2 cut(s) 5, 1328
MspI CCGG 3 cut(s) 617, 751, 1107
MspR9I CCNGG 2 cut(s) 728, 1376
MunI CAATTG 2 cut(s) 267, 839
MvaI CCWGG 2 cut(s) 728, 1376
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 3 cut(s) 215, 452, 959
NcoI CCATGG 1 cut(s) 1157
NdeII GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
NlaIII CATG 5 cut(s) 35, 74, 913, 1161, 1245
NlaIV GGNNCC 6 cut(s) 229, 415, 432, 1129, 1294, 1353
NmuCI GTSAC 2 cut(s) 589, 1074
PagI TCATGA 1 cut(s) 31
PfeI GAWTC 2 cut(s) 490, 849
PfoI TCCNGGA 1 cut(s) 726
PkrI GCNGC 4 cut(s) 689, 964, 1031, 1034
PleI GAGTC 2 cut(s) 567, 628
PpsI GAGTC 2 cut(s) 567, 628
Ppu21I YACGTR 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 566
PsiI TTATAA 2 cut(s) 1058, 1166
Psp124BI GAGCTC 1 cut(s) 1286
Psp6I CCWGG 2 cut(s) 726, 1374
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 2 cut(s) 726, 1374
PspN4I GGNNCC 6 cut(s) 229, 415, 432, 1129, 1294, 1353
PspPI GGNCC 2 cut(s) 272, 775
PstI CTGCAG 2 cut(s) 678, 1034
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 4 cut(s) 432, 1294, 1307, 1353
RsaNI GTAC 4 cut(s) 431, 1293, 1306, 1352
RseI CAYNNNNRTG 2 cut(s) 1246, 1343
SacI GAGCTC 1 cut(s) 1286
SaqAI TTAA 6 cut(s) 200, 497, 566, 824, 1194, 1398
SatI GCNGC 4 cut(s) 688, 963, 1030, 1033
Sau3AI GATC 6 cut(s) 67, 85, 190, 276, 828, 1314
Sau96I GGNCC 2 cut(s) 272, 775
SchI GAGTC 2 cut(s) 567, 629
ScrFI CCNGG 2 cut(s) 728, 1376
SduI GDGCHC 2 cut(s) 1253, 1286
SfaNI GCATC 4 cut(s) 134, 658, 685, 1400
SfcI CTRYAG 2 cut(s) 674, 1030
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 2 cut(s) 1246, 1343
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
Sse9I AATT 9 cut(s) 19, 137, 196, 267, 450, 531, 567, 767, 839
SsiI CCGC 2 cut(s) 126, 687
SspI AATATT 3 cut(s) 880, 1192, 1335
SspMI CTAG 1 cut(s) 1223
SstI GAGCTC 1 cut(s) 1286
StyD4I CCNGG 2 cut(s) 726, 1374
StyI CCWWGG 2 cut(s) 1080, 1157
TaaI ACNGT 3 cut(s) 213, 1074, 1292
TaiI ACGT 1 cut(s) 429
TaqI TCGA 4 cut(s) 295, 469, 783, 1136
TaqII GACCGA 1 cut(s) 590
TasI AATT 9 cut(s) 19, 137, 196, 267, 450, 531, 567, 767, 839
TauI GCSGC 1 cut(s) 690
TfiI GAWTC 2 cut(s) 490, 849
Tru1I TTAA 6 cut(s) 200, 497, 566, 824, 1194, 1398
Tru9I TTAA 6 cut(s) 200, 497, 566, 824, 1194, 1398
TscAI CASTG 4 cut(s) 286, 525, 678, 1317
TseFI GTSAC 2 cut(s) 589, 1074
TseI GCWGC 3 cut(s) 962, 1029, 1032
Tsp45I GTSAC 2 cut(s) 589, 1074
TspDTI ATGAA 8 cut(s) 150, 150, 411, 517, 601, 1055, 1111, 1327
TspRI CASTG 4 cut(s) 286, 525, 678, 1317
VpaK11BI GGWCC 1 cut(s) 775
VspI ATTAAT 1 cut(s) 566
XapI RAATTY 2 cut(s) 19, 137
XspI CTAG 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.