MD12G1225800.v1.1
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
30137748 .. 30139036
1289 bp
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UTR
Exon/CDS
Intron
MD12G1225800.v1.1.491

Sequence Viewer

Length: 576 bp
ATGAGCAGAGAAAACATAGAAGAACTCTCAAATCCTTTGCTCGTCAAAAATACTACATCCAAGCTCCATAGTGGTGGCAGCGGCAGCGGTGGCAGCAATAACAACGGTGGTGCTAGTTATGAAGAAGGAGGTGAAAGTAGCTCATCAGCCACGATTATGGTTGTGGTCAGCACTCTGGTTGCTGTCTCTGGCTCCTATGTTTTTGGGTCTGCGGTGGGATATTCCTCACCAGCTCGGTCTGGGGTCATGAATGATCTGGGCCTCACTGTAGCTCAGTACTCGTTTTTTGGTTCAATATTGACAATCGGAGCAATGATAGGAGCAGTAGTGAGTGGAAGAATAGCAGATTATATAGGCAGAAGAGGTGCAATGACATTTTCCGAGATATTCTGCATTTTGGGATGGCTAGCAATAGCTTTCTCTAAGGTTGCTTGGTGGGCGGAACTTGGAAGACTGTTGGTTGGATGTGGAATGGGGCTTCTTTCTCATGTGGTAATTTTTGTGAGGATTGCAATTGCATACAGAACTCATGTAAGATTTTTGTCGAAGTTCTGCGTAAAATTGTTTATGATTTGA

Protein Analysis

192

Amino Acids

20.13

Weight (kDa)

9.12

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 70 - 163 7.6e-08 Major Facilitator Superfamily
Sugar_tr PF00083 74 - 165 5.3e-09 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 81, 87, 212, 440
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 1 cut(s) 294
AluBI AGCT 5 cut(s) 64, 141, 233, 272, 416
AluI AGCT 5 cut(s) 64, 141, 233, 272, 416
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 3 cut(s) 78, 84, 93
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 143, 219
AsuNHI GCTAGC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 90, 96, 105
BccI CCATC 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 2 cut(s) 114, 407
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 4 cut(s) 79, 82, 85, 94
BlsI GCNGC 4 cut(s) 80, 83, 86, 95
BmcAI AGTACT 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 193
BmtI GCTAGC 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse3DI GCAATG 2 cut(s) 318, 375
BseGI GGATG 3 cut(s) 56, 407, 470
BseMI GCAATG 2 cut(s) 318, 375
BseMII CTCAG 1 cut(s) 287
BseXI GCAGC 3 cut(s) 90, 96, 105
BshFI GGCC 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 190
BsnI GGCC 1 cut(s) 261
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 4 cut(s) 81, 87, 212, 440
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 193
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 7 cut(s) 120, 165, 178, 249, 262, 1149, 1162
BsrDI GCAATG 2 cut(s) 318, 375
BssMI GATC 1 cut(s) 253
Bst4CI ACNGT 3 cut(s) 107, 268, 456
Bst6I CTCTTC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 273, 423
BstF5I GGATG 3 cut(s) 56, 407, 470
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 84, 90, 93, 437
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 90, 96, 105
BstV2I GAAGAC 1 cut(s) 457
BstXI CCANNNNNNTGG 2 cut(s) 74, 157
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 3 cut(s) 56, 407, 470
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 408
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 277
CviAII CATG 3 cut(s) 247, 488, 530
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 273, 423
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
EciI GGCGGA 1 cut(s) 455
FaeI CATG 3 cut(s) 250, 491, 533
FatI CATG 3 cut(s) 246, 487, 529
Fnu4HI GCNGC 4 cut(s) 79, 82, 85, 94
FokI GGATG 3 cut(s) 43, 414, 477
Fsp4HI GCNGC 4 cut(s) 79, 82, 85, 94
FspBI CTAG 2 cut(s) 114, 407
GluI GCNGC 4 cut(s) 79, 82, 85, 94
HaeIII GGCC 1 cut(s) 261
Hin1II CATG 3 cut(s) 250, 491, 533
HphI GGTGA 2 cut(s) 143, 219
Hpy188I TCNGA 2 cut(s) 308, 382
Hpy188III TCNNGA 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 3 cut(s) 107, 268, 456
HpyCH4V TGCA 4 cut(s) 368, 393, 512, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 90, 93, 437
HpyF3I CTNAG 2 cut(s) 273, 423
Hsp92II CATG 3 cut(s) 250, 491, 533
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 4 cut(s) 69, 197, 308, 320
LpnPI CCDG 5 cut(s) 161, 174, 225, 242, 243
Lsp1109I GCAGC 3 cut(s) 90, 96, 105
MaeI CTAG 2 cut(s) 114, 407
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 5 cut(s) 32, 134, 348, 372, 462
MfeI CAATTG 1 cut(s) 513
MluCI AATT 3 cut(s) 495, 513, 560
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 5 cut(s) 122, 235, 272, 356, 498
MslI CAYNNNNRTG 2 cut(s) 72, 155
MspA1I CMGCKG 2 cut(s) 81, 87
MunI CAATTG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 84, 90, 93, 437
NdeII GATC 1 cut(s) 253
NheI GCTAGC 1 cut(s) 406
NlaIII CATG 3 cut(s) 250, 491, 533
NlaIV GGNNCC 1 cut(s) 193
PagI TCATGA 1 cut(s) 246
PkrI GCNGC 4 cut(s) 80, 83, 86, 95
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 259
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 72, 155
SatI GCNGC 4 cut(s) 79, 82, 85, 94
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 278
SetI ASST 8 cut(s) 66, 133, 143, 235, 274, 367, 418, 429
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 72, 155
Sse9I AATT 3 cut(s) 495, 513, 560
SsiI CCGC 4 cut(s) 81, 87, 212, 440
SspI AATATT 1 cut(s) 297
SspMI CTAG 2 cut(s) 114, 407
TaaI ACNGT 3 cut(s) 107, 268, 456
TaqI TCGA 1 cut(s) 545
TaqII GACCGA 1 cut(s) 225
TasI AATT 3 cut(s) 495, 513, 560
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 84
TscAI CASTG 1 cut(s) 271
TseI GCWGC 3 cut(s) 78, 84, 93
TspDTI ATGAA 2 cut(s) 135, 263
TspRI CASTG 1 cut(s) 271
XspI CTAG 2 cut(s) 114, 407
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.