Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

35756600 .. 35758277

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0223600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAGGAGGCGAAAGACTTCGAGTTTAAAATCAGCCAATTGGACGAGAAAATCAAATCTCTAACACATGCCAAGAAAGAGGATCAGATTGTTTCGAGGCAGCGGGTGCAGCGGACAATTGATGAAGCAAGGCAAGTGTTGAATGGTCTCAGAAAAGTGGTGACTGACTTCGAAGCTCAACTGGCGGCGGCTGAGGACAAGGTGGGTGGATCTGCGGCGGAGGACGACGCCAGAAAGGAAGTGGCTGCTGCGAGAGCTGAAGTGGAAGCTCAAATCGCCCAATTGGAGCAAGCTCAGAATAAGTTGAACAACTTGGACATACCATCTGAGCTAGTGCAAGGTAGGTTGGCTTATGGCTTCTTGTTAGCTGCAGTTTCATATGGTGTTGAGTTGGACTGTTGGAGTGTTGTGGTCCGTGACAACACTAGTTTGGTTGTTGGAGGTGCTTGTGGGAGGTGTGCTTTTGCACAATCTGCAGTTGTGATGGAGGCGTTGGCTGTGAGGGTAGCTTGTGATTTGGTGGAGAAATTTCATTTTACACCTATTACTATTGAATCTGATTATCTGACCGTTGTGGTTGGAGTTCAGGCTATACTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

200

Amino Acids

21.82

Weight (kDa)

4.83

Isoelectric Point (pI)

27.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	103, 112, 185, 188, 215, 218
AclWI	GGATC	2 cut(s)	90, 217
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	142, 307, 554
AhlI	ACTAGT	1 cut(s)	425
AluBI	AGCT	7 cut(s)	176, 257, 269, 293, 331, 368, 509
AluI	AGCT	7 cut(s)	176, 257, 269, 293, 331, 368, 509
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	90, 217
ApeKI	GCWGC	5 cut(s)	100, 109, 245, 248, 368
ApoI	RAATTY	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	5 cut(s)	112, 121, 232, 235, 355
BccI	CCATC	2 cut(s)	331, 478
BcoDI	GTCTC	1 cut(s)	152
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	2 cut(s)	332, 426
BfmI	CTRYAG	2 cut(s)	369, 474
BisI	GCNGC	8 cut(s)	101, 110, 186, 189, 216, 246, 249, 369
BlsI	GCNGC	8 cut(s)	102, 111, 187, 190, 217, 247, 250, 370
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	186, 600
BseMII	CTCAG	4 cut(s)	163, 183, 308, 318
BseNI	ACTGG	2 cut(s)	186, 600
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	112, 121, 232, 235, 355
BsgI	GTGCAG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	82, 209
BspACI	CCGC	6 cut(s)	103, 112, 185, 188, 215, 218
BspCNI	CTCAG	4 cut(s)	162, 184, 307, 319
BspMAI	CTGCAG	2 cut(s)	373, 478
BspPI	GGATC	2 cut(s)	90, 217
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	186, 600
BssMI	GATC	2 cut(s)	82, 209
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	398, 571
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	2 cut(s)	106, 473
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	4 cut(s)	149, 192, 294, 327
BstKTI	GATC	2 cut(s)	85, 212
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	2 cut(s)	82, 209
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 109, 182, 254, 275, 473
BstNSI	RCATGY	1 cut(s)	71
BstSFI	CTRYAG	2 cut(s)	369, 474
BstV1I	GCAGC	5 cut(s)	112, 121, 232, 235, 355
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	1 cut(s)	236
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	1 cut(s)	68
DdeI	CTNAG	4 cut(s)	149, 192, 294, 327
DpnI	GATC	2 cut(s)	84, 211
DpnII	GATC	2 cut(s)	82, 209
DraI	TTTAAA	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	279
FaeI	CATG	1 cut(s)	71
FaiI	YATR	7 cut(s)	69, 320, 354, 379, 381, 593, 601
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	8 cut(s)	101, 110, 186, 189, 216, 246, 249, 369
Fsp4HI	GCNGC	8 cut(s)	101, 110, 186, 189, 216, 246, 249, 369
FspBI	CTAG	2 cut(s)	332, 426
GluI	GCNGC	8 cut(s)	101, 110, 186, 189, 216, 246, 249, 369
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	1 cut(s)	554
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	6 cut(s)	87, 152, 297, 328, 559, 567
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	398, 571
HpyCH4V	TGCA	5 cut(s)	109, 337, 371, 467, 476
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 109, 182, 254, 275, 473
HpyF3I	CTNAG	4 cut(s)	149, 192, 294, 327
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	82, 209
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	4 cut(s)	167, 244, 572, 581
Lsp1109I	GCAGC	5 cut(s)	112, 121, 232, 235, 355
MaeI	CTAG	2 cut(s)	332, 426
MaeIII	GTNAC	2 cut(s)	160, 416
MalI	GATC	2 cut(s)	84, 211
MboI	GATC	2 cut(s)	82, 209
MfeI	CAATTG	3 cut(s)	38, 117, 281
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	4 cut(s)	38, 117, 281, 527
MmeI	TCCRAC	4 cut(s)	372, 380, 418, 559
MnlI	CCTC	8 cut(s)	73, 90, 187, 214, 434, 447, 481, 495
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	103, 112
MunI	CAATTG	3 cut(s)	38, 117, 281
MwoI	GCNNNNNNNGC	6 cut(s)	106, 109, 182, 254, 275, 473
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	82, 209
NlaIII	CATG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	160, 416
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	8 cut(s)	102, 111, 187, 190, 217, 247, 250, 370
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	2 cut(s)	373, 478
PsuI	RGATCY	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	8 cut(s)	101, 110, 186, 189, 216, 246, 249, 369
Sau3AI	GATC	2 cut(s)	82, 209
Sau96I	GGNCC	1 cut(s)	412
SfcI	CTRYAG	2 cut(s)	369, 474
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	1 cut(s)	412
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	4 cut(s)	38, 117, 281, 527
SsiI	CCGC	6 cut(s)	103, 112, 185, 188, 215, 218
SspMI	CTAG	2 cut(s)	332, 426
TaaI	ACNGT	2 cut(s)	398, 571
TaqI	TCGA	3 cut(s)	21, 95, 171
TasI	AATT	4 cut(s)	38, 117, 281, 527
TauI	GCSGC	3 cut(s)	188, 191, 218
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	160, 416
TseI	GCWGC	5 cut(s)	100, 109, 245, 248, 368
Tsp45I	GTSAC	2 cut(s)	160, 416
TspDTI	ATGAA	3 cut(s)	138, 366, 521
TspGWI	ACGGA	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	332, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.