AT2G48020

sugar transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
19644021 .. 19647365
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G48020.2

Sequence Viewer

Length: 1392 bp
ATGTCCAAGGCAAGTGATGCCGTCAGAGAACCATTGGTGGACAAGAATATGGCTGGATCAAAACCAGACCAGCCGTGGATGGTTTATCTCAGCACATTCGTTGCGGTCTGTGGTTCTTTTGCGTTCGGTTCTTGTGCGGGATACTCTTCACCTGCTCAGGCTGCAATTAGGAATGACCTTTCATTGACTATAGCTGAGTTTTCACTCTTTGGTTCTTTACTAACTTTTGGCGCAATGATCGGTGCTATAACAAGCGGGCCTATAGCTGATTTAGTTGGAAGAAAGGGGGCGATGAGAGTTTCCTCTGCATTTTGTGTAGTCGGGTGGCTAGCAATCATCTTTGCCAAGGGAGTAGTGGCTCTGGACCTTGGAAGACTGGCAACGGGATATGGAATGGGAGCATTTTCCTATGTGGTGCCAATCTTTATAGCAGAAATTGCACCTAAAACTTTCAGAGGGGCTCTAACCACACTGAACCAGATTCTGATCTGCACTGGAGTGTCGGTTTCCTTCATCATAGGCACACTAGTGACGTGGAGAGTCTTGGCATTAATAGGAATCATCCCATGCGCTGCCTCCTTCCTTGGCCTCTTTTTTATCCCTGAGTCTCCAAGATGGCTGGCAAAAGTGGGGCGTGATACGGAGTTTGAAGCTGCACTGAGGAAGCTCCGTGGGAAGAAGGCTGATATTTCGGAGGAGGCAGCAGAGATCCAGGATTATATCGAAACTCTGGAAAGGCTACCGAAAGCCAAGATGCTGGATTTGTTTCAGAGGAGATACATACGCTCTGTTCTTATAGCTTTCGGGTTGATGGTGTTTCAGCAGTTTGGAGGAATCAACGGAATATGTTTCTACACAAGCTCGATATTTGAGCAAGCAGGTTTTCCCACAAGACTTGGGATGATAATATATGCTGTTCTTCAGGTGGTAATCACTGCGCTTAATGCACCGATAGTTGACAGAGCCGGAAGAAAACCATTGCTACTGGTTTCTGCAACAGGGTTAGTGATAGGCTGTTTGATAGCAGCGGTTTCTTTCTATCTCAAGGTTCACGACATGGCGCACGAAGCAGTCCCAGTCCTGGCTGTTGTTGGTATAATGGTGTACATAGGATCGTTTTCAGCAGGAATGGGAGCAATGCCGTGGGTGGTCATGTCTGAGATATTTCCCATAAACATAAAAGGAGTAGCAGGAGGCATGGCGACGCTGGTGAACTGGTTTGGAGCGTGGGCTGTTTCTTACACTTTCAACTTCCTCATGTCCTGGAGCTCTTACGGAACTTTCCTCATTTACGCTGCCATCAACGCGCTGGCCATTGTCTTCGTCATTGCCATCGTGCCTGAGACAAAAGGGAAGACATTGGAGCAGATCCAAGCTATAGTCAATCCATAG

Protein Analysis

463

Amino Acids

49.7

Weight (kDa)

8.98

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 34 - 459 5.9e-91 Sugar (and other) transporter
MFS_1 PF07690 37 - 409 9.5e-27 Major Facilitator Superfamily
MFS_1 PF07690 301 - 453 8.1e-07 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 2 cut(s) 160, 869
AccB1I GGYRCC 1 cut(s) 415
AccII CGCG 1 cut(s) 1307
AciI CCGC 4 cut(s) 104, 137, 255, 1028
AclWI GGATC 4 cut(s) 64, 703, 1120, 1363
AcoI YGGCCR 1 cut(s) 1311
AcuI CTGAAG 1 cut(s) 905
AfaI GTAC 1 cut(s) 1106
AfiI CCNNNNNNNGG 1 cut(s) 1081
AgsI TTSAA 2 cut(s) 650, 1249
AhlI ACTAGT 1 cut(s) 526
AjiI CACGTC 1 cut(s) 534
AjnI CCWGG 3 cut(s) 711, 1080, 1262
AleI CACNNNNGTG 2 cut(s) 497, 527
AluBI AGCT 8 cut(s) 194, 266, 653, 667, 800, 861, 1269, 1376
AluI AGCT 8 cut(s) 194, 266, 653, 667, 800, 861, 1269, 1376
Alw21I GWGCWC 1 cut(s) 1271
Alw26I GTCTC 2 cut(s) 612, 1337
AlwI GGATC 4 cut(s) 64, 703, 1120, 1363
AlwNI CAGNNNCTG 1 cut(s) 484
AoxI GGCC 3 cut(s) 257, 586, 1311
ApeKI GCWGC 6 cut(s) 161, 572, 653, 701, 1025, 1295
AseI ATTAAT 1 cut(s) 551
AspLEI GCGC 5 cut(s) 233, 572, 940, 1063, 1309
AspS9I GGNCC 2 cut(s) 257, 364
AsuHPI GGTGA 2 cut(s) 141, 1222
AsuNHI GCTAGC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 364
BalI TGGCCA 1 cut(s) 1313
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 463, 1271
BbsI GAAGAC 3 cut(s) 379, 1312, 1361
Bbv12I GWGCWC 1 cut(s) 1271
BbvI GCAGC 6 cut(s) 148, 559, 640, 713, 1037, 1282
BccI CCATC 5 cut(s) 73, 609, 805, 1307, 1340
BceAI ACGGC 3 cut(s) 5, 58, 1126
BciT130I CCWGG 3 cut(s) 713, 1082, 1264
BciVI GTATCC 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 612, 1337
BcuI ACTAGT 1 cut(s) 526
BfaI CTAG 2 cut(s) 329, 527
BfmI CTRYAG 3 cut(s) 189, 261, 1377
BfuAI ACCTGC 2 cut(s) 160, 869
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 6 cut(s) 162, 573, 654, 702, 1026, 1296
BlsI GCNGC 6 cut(s) 163, 574, 655, 703, 1027, 1297
Bme1390I CCNGG 3 cut(s) 713, 1082, 1264
Bme18I GGWCC 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 257, 364
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 3 cut(s) 713, 1082, 1264
BmrI ACTGGG 1 cut(s) 1070
BmsI GCATC 2 cut(s) 7, 744
BmtI GCTAGC 1 cut(s) 332
BmuI ACTGGG 1 cut(s) 1070
BpiI GAAGAC 3 cut(s) 379, 1312, 1361
BpmI CTGGAG 2 cut(s) 516, 1285
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 1028
BsaBI GATNNNNATC 1 cut(s) 485
BsaJI CCNNGG 7 cut(s) 6, 74, 345, 367, 583, 670, 1142
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 1081
Bse1I ACTGG 5 cut(s) 381, 499, 990, 1076, 1220
Bse3DI GCAATG 4 cut(s) 240, 977, 1143, 1326
Bse8I GATNNNNATC 1 cut(s) 485
BseBI CCWGG 3 cut(s) 713, 1082, 1264
BseDI CCNNGG 7 cut(s) 6, 74, 345, 367, 583, 670, 1142
BseGI GGATG 3 cut(s) 84, 561, 906
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 1081
BseMI GCAATG 4 cut(s) 240, 977, 1143, 1326
BseMII CTCAG 7 cut(s) 103, 170, 186, 594, 650, 1149, 1332
BseNI ACTGG 5 cut(s) 381, 499, 990, 1076, 1220
BseRI GAGGAG 2 cut(s) 710, 787
BseXI GCAGC 6 cut(s) 148, 559, 640, 713, 1037, 1282
BsgI GTGCAG 2 cut(s) 475, 639
Bsh1236I CGCG 1 cut(s) 1307
BshFI GGCC 3 cut(s) 259, 588, 1313
BshNI GGYRCC 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 1271
BsiSI CCGG 1 cut(s) 966
BslFI GGGAC 1 cut(s) 1058
BslI CCNNNNNNNGG 1 cut(s) 1081
BsmAI GTCTC 2 cut(s) 612, 1337
BsmFI GGGAC 1 cut(s) 1058
BsnI GGCC 3 cut(s) 259, 588, 1313
Bsp1286I GDGCHC 2 cut(s) 463, 1271
Bsp1407I TGTACA 1 cut(s) 1104
Bsp143I GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
BspACI CCGC 4 cut(s) 104, 137, 255, 1028
BspANI GGCC 3 cut(s) 259, 588, 1313
BspCNI CTCAG 7 cut(s) 102, 169, 187, 595, 651, 1150, 1333
BspFNI CGCG 1 cut(s) 1307
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 2 cut(s) 160, 869
BspOI GCTAGC 1 cut(s) 332
BspPI GGATC 4 cut(s) 64, 703, 1120, 1363
BspT107I GGYRCC 1 cut(s) 415
BsrDI GCAATG 4 cut(s) 240, 977, 1143, 1326
BsrGI TGTACA 1 cut(s) 1104
BsrI ACTGG 5 cut(s) 381, 499, 990, 1076, 1220
BssECI CCNNGG 7 cut(s) 6, 74, 345, 367, 583, 670, 1142
BssMI GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
BssT1I CCWWGG 4 cut(s) 6, 345, 367, 583
Bst2UI CCWGG 3 cut(s) 713, 1082, 1264
Bst6I CTCTTC 1 cut(s) 151
BstAPI GCANNNNNTGC 2 cut(s) 17, 437
BstAUI TGTACA 1 cut(s) 1104
BstC8I GCNNGC 5 cut(s) 257, 330, 621, 876, 1311
BstDEI CTNAG 7 cut(s) 89, 156, 195, 603, 659, 1158, 1341
BstDSI CCRYGG 3 cut(s) 74, 670, 1142
BstF5I GGATG 3 cut(s) 84, 561, 906
BstFNI CGCG 1 cut(s) 1307
BstHHI GCGC 5 cut(s) 233, 572, 940, 1063, 1309
BstKTI GATC 6 cut(s) 59, 240, 489, 711, 1115, 1371
BstMAI GTCTC 2 cut(s) 612, 1337
BstMBI GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
BstMWI GCNNNNNNNGC 6 cut(s) 17, 161, 437, 944, 1067, 1304
BstNI CCWGG 3 cut(s) 713, 1082, 1264
BstSCI CCNGG 3 cut(s) 711, 1080, 1262
BstSFI CTRYAG 3 cut(s) 189, 261, 1377
BstUI CGCG 1 cut(s) 1307
BstV1I GCAGC 6 cut(s) 148, 559, 640, 713, 1037, 1282
BstV2I GAAGAC 3 cut(s) 379, 1312, 1361
BstX2I RGATCY 2 cut(s) 708, 1368
BstXI CCANNNNNNTGG 1 cut(s) 757
BstYI RGATCY 2 cut(s) 708, 1368
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 3 cut(s) 259, 588, 1313
BtgI CCRYGG 3 cut(s) 74, 670, 1142
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 534
BtsCI GGATG 3 cut(s) 84, 561, 906
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 4 cut(s) 470, 492, 656, 933
BveI ACCTGC 2 cut(s) 160, 869
Cac8I GCNNGC 5 cut(s) 257, 330, 621, 876, 1311
CaiI CAGNNNCTG 1 cut(s) 484
CfoI GCGC 5 cut(s) 233, 572, 940, 1063, 1309
Cfr13I GGNCC 2 cut(s) 257, 364
CseI GACGC 1 cut(s) 1213
Csp6I GTAC 1 cut(s) 1105
CspCI CAANNNNNGTGG 2 cut(s) 877, 912
CviAII CATG 5 cut(s) 567, 1057, 1153, 1198, 1258
CviQI GTAC 1 cut(s) 1105
DdeI CTNAG 7 cut(s) 89, 156, 195, 603, 659, 1158, 1341
DpnI GATC 6 cut(s) 58, 239, 488, 710, 1114, 1370
DpnII GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
EaeI YGGCCR 1 cut(s) 1311
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 1269
Eco130I CCWWGG 4 cut(s) 6, 345, 367, 583
Eco24I GRGCYC 2 cut(s) 463, 1271
Eco47I GGWCC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 1269
Eco57I CTGAAG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 1269
EcoRII CCWGG 3 cut(s) 711, 1080, 1262
EcoT14I CCWWGG 4 cut(s) 6, 345, 367, 583
EcoT38I GRGCYC 2 cut(s) 463, 1271
ErhI CCWWGG 4 cut(s) 6, 345, 367, 583
FaeI CATG 5 cut(s) 570, 1060, 1156, 1201, 1261
FaqI GGGAC 1 cut(s) 1058
FatI CATG 5 cut(s) 566, 1056, 1152, 1197, 1257
FauI CCCGC 2 cut(s) 130, 248
Fnu4HI GCNGC 6 cut(s) 162, 573, 654, 702, 1026, 1296
FokI GGATG 3 cut(s) 91, 548, 913
FriOI GRGCYC 2 cut(s) 463, 1271
Fsp4HI GCNGC 6 cut(s) 162, 573, 654, 702, 1026, 1296
FspBI CTAG 2 cut(s) 329, 527
GlaI GCGC 5 cut(s) 232, 571, 939, 1062, 1308
GluI GCNGC 6 cut(s) 162, 573, 654, 702, 1026, 1296
GsuI CTGGAG 2 cut(s) 516, 1285
HaeIII GGCC 3 cut(s) 259, 588, 1313
HapII CCGG 1 cut(s) 966
HgaI GACGC 1 cut(s) 1213
HhaI GCGC 5 cut(s) 233, 572, 940, 1063, 1309
Hin1II CATG 5 cut(s) 570, 1060, 1156, 1201, 1261
Hin6I GCGC 5 cut(s) 231, 570, 938, 1061, 1307
HinP1I GCGC 5 cut(s) 231, 570, 938, 1061, 1307
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HinfI GANTC 5 cut(s) 481, 540, 558, 605, 834
HpaII CCGG 1 cut(s) 966
HphI GGTGA 2 cut(s) 141, 1222
Hpy166II GTNNAC 5 cut(s) 40, 958, 1051, 1105, 1213
Hpy188I TCNGA 6 cut(s) 26, 455, 486, 694, 771, 1159
Hpy188III TCNNGA 3 cut(s) 362, 731, 1052
Hpy8I GTNNAC 5 cut(s) 40, 958, 1051, 1105, 1213
Hpy99I CGWCG 1 cut(s) 1207
HpyAV CCTTC 3 cut(s) 520, 589, 673
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 7 cut(s) 164, 308, 440, 492, 656, 947, 995
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 161, 437, 944, 1067, 1304
HpyF3I CTNAG 7 cut(s) 89, 156, 195, 603, 659, 1158, 1341
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 5 cut(s) 570, 1060, 1156, 1201, 1261
HspAI GCGC 5 cut(s) 231, 570, 938, 1061, 1307
Kzo9I GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
LmnI GCTCC 6 cut(s) 398, 672, 1133, 1223, 1266, 1363
Lsp1109I GCAGC 6 cut(s) 148, 559, 640, 713, 1037, 1282
LweI GCATC 2 cut(s) 7, 744
MaeI CTAG 2 cut(s) 329, 527
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 529
MalI GATC 6 cut(s) 58, 239, 488, 710, 1114, 1370
MboI GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
MboII GAAGA 8 cut(s) 138, 291, 384, 688, 911, 981, 1312, 1366
MflI RGATCY 2 cut(s) 708, 1368
MhlI GDGCHC 2 cut(s) 463, 1271
MlsI TGGCCA 1 cut(s) 1313
MluCI AATT 2 cut(s) 165, 435
MluNI TGGCCA 1 cut(s) 1313
MlyI GAGTC 2 cut(s) 549, 614
MmeI TCCRAC 1 cut(s) 256
Mox20I TGGCCA 1 cut(s) 1313
MscI TGGCCA 1 cut(s) 1313
MseI TTAA 2 cut(s) 551, 942
MslI CAYNNNNRTG 2 cut(s) 497, 527
Msp20I TGGCCA 1 cut(s) 1313
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 1 cut(s) 966
MspR9I CCNGG 3 cut(s) 713, 1082, 1264
MvaI CCWGG 3 cut(s) 713, 1082, 1264
MvnI CGCG 1 cut(s) 1307
MwoI GCNNNNNNNGC 6 cut(s) 17, 161, 437, 944, 1067, 1304
NdeII GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 5 cut(s) 570, 1060, 1156, 1201, 1261
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 529
OliI CACNNNNGTG 2 cut(s) 497, 527
PaqCI CACCTGC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 481, 558, 834
PfoI TCCNGGA 2 cut(s) 711, 1262
PkrI GCNGC 6 cut(s) 163, 574, 655, 703, 1027, 1297
PleI GAGTC 2 cut(s) 548, 613
PpsI GAGTC 2 cut(s) 548, 613
PshBI ATTAAT 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 1271
Psp6I CCWGG 3 cut(s) 711, 1080, 1262
PspGI CCWGG 3 cut(s) 711, 1080, 1262
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 257, 364
PstNI CAGNNNCTG 1 cut(s) 484
PsuI RGATCY 2 cut(s) 708, 1368
RsaI GTAC 1 cut(s) 1106
RsaNI GTAC 1 cut(s) 1105
RseI CAYNNNNRTG 2 cut(s) 497, 527
SacI GAGCTC 1 cut(s) 1271
SaqAI TTAA 2 cut(s) 551, 942
SatI GCNGC 6 cut(s) 162, 573, 654, 702, 1026, 1296
Sau3AI GATC 6 cut(s) 56, 237, 486, 708, 1112, 1368
Sau96I GGNCC 2 cut(s) 257, 364
SchI GAGTC 2 cut(s) 549, 614
ScrFI CCNGG 3 cut(s) 713, 1082, 1264
SduI GDGCHC 2 cut(s) 463, 1271
SfaNI GCATC 2 cut(s) 7, 744
SfcI CTRYAG 3 cut(s) 189, 261, 1377
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 497, 527
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
SpeI ACTAGT 1 cut(s) 526
Sse9I AATT 2 cut(s) 165, 435
SsiI CCGC 4 cut(s) 104, 137, 255, 1028
SspMI CTAG 2 cut(s) 329, 527
SstI GAGCTC 1 cut(s) 1271
StyD4I CCNGG 3 cut(s) 711, 1080, 1262
StyI CCWWGG 4 cut(s) 6, 345, 367, 583
TaiI ACGT 1 cut(s) 536
TaqI TCGA 2 cut(s) 723, 863
TasI AATT 2 cut(s) 165, 435
TatI WGTACW 1 cut(s) 1104
TfiI GAWTC 3 cut(s) 481, 558, 834
Tru1I TTAA 2 cut(s) 551, 942
Tru9I TTAA 2 cut(s) 551, 942
TscAI CASTG 4 cut(s) 477, 499, 663, 940
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 6 cut(s) 161, 572, 653, 701, 1025, 1295
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 2 cut(s) 171, 502
TspGWI ACGGA 4 cut(s) 656, 659, 855, 1290
TspRI CASTG 4 cut(s) 477, 499, 663, 940
VpaK11BI GGWCC 1 cut(s) 364
VspI ATTAAT 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 3 cut(s) 72, 352, 1306
XspI CTAG 2 cut(s) 329, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.