FvH4_2g24290
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
19850438 .. 19853719
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24290.t1

Sequence Viewer

Length: 1443 bp
ATGGCGATCAAAGAGGATGTGGAGAATGTTGTGCAGGAGAACATAAGGGAGCCACTCGTGAGAAGTAGTGGAGAGGGATCTGGTCATGGAAGCGGCAAAGAGGATCAATGGATGGTTTACCTGAGCACATTTGTTGCAGTTTGCGGCTCTTATGAATTCGGATGTTGTGTGGGTTATTCATCGCCTACTCAGTCTGCCATCACTGAAGATCTCAGTTTAACAACTTCAGAGTACTCAGTGTTTGGCTCCATTCTTACATTTGGTGCAATGATAGGTGCTATCACAATTGGACCCATCACCGATCTTGTTGGTCGAAAAGGAGCCTTGAGAATGTCCTGTGCTTTCTGTGTTGTGGGTTGGCTTGCTATTTACTTTGCTGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGATATGGAATGGGAGCCTTTTCATATGTTGTACCTGTTTTTGTTTCTGAAATTGCACCCAAACATCTTCGAGGAAGACTAACTGCTTTAAATCAGTTGATGATTGTTTCTGGAGTCTCCGTTTCCTTTATAATTGGGCTTGTAGTAAGCTGGAGGGCATTAGCACTAATAGGACTAATTCCGTGTGCTGTGACCCTTTTTGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGAAAGGACGCCACAACGATTTTGAAGTTGCACTGCAGAAACTTCGTGGGAAAGATGTTGACGTATCTCATGAAGCAGCAGAAATCCAGGATTATATAGCAACTCTTGACAGTCTCCCTAAAGCCAAATTGCTAGATTTGTTTCAAAGGAGATACTTGCCGGCAGTCTTGATAGCAGTTTTCTTGATGGTCTTTCAACAACTGGGAGGAATCAATGGTGTCTGTTTCTATGTCAGTGATATTTTTGAGCAAGCAGGATTTTCTTCCACCGTTGGAACTATAATCTACGCTATTCTTCAGGTTGTGGTAACTGGCATAGGTGCATCCATAATGGATAAAGCCGGACGAAAGCCTCTGATATTGACTTCTGCATCAGGATTGCTACTTGGCTGTGTGGTGACTGCAATTGCATTCTTTCTCACGGCTCAAGAACTGGCTCTCACTGTTGCTCCTGTACTTGCAGTAACTGGCATACTGATATTCATAGGAGCCTTTTCAATAGGAATGGGAGCAGTGCCTTGGATTATCATGTCTGAGATATTCCCTATAAATATTAAAGGGCAAGCCGGAAGCTTAGCCACACTAGTGAACTGGTTCGGTGCATGGTTGTGTTCCTACACTTTCAACTTCCTTATGAGTTGGAGCACATACGGTACCTTCATTCTGTATGCAGCAATCAATGCTCTAGCTATATTTTTTGTGATATTCTTTGTACCTGAAACCAAGGGGAAAACTCTGGAACAAATCCAAGCAGCCATAAGTAAAGAGAGAAGTGAAGAAACATAA

Protein Analysis

481

Amino Acids

51.76

Weight (kDa)

5.55

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 59 - 420 4.2e-28 Major Facilitator Superfamily
Sugar_tr PF00083 65 - 470 7.1e-97 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
Acc65I GGTACC 1 cut(s) 1310
AccB1I GGYRCC 1 cut(s) 1310
AciI CCGC 2 cut(s) 93, 144
AclWI GGATC 2 cut(s) 85, 111
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 3 cut(s) 210, 225, 938
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 5 cut(s) 233, 450, 1113, 1312, 1371
AgsI TTSAA 5 cut(s) 683, 803, 854, 1155, 1282
AhlI ACTAGT 1 cut(s) 1240
AjnI CCWGG 1 cut(s) 744
AleI CACNNNNGTG 1 cut(s) 1241
AluBI AGCT 3 cut(s) 567, 1230, 1346
AluI AGCT 3 cut(s) 567, 1230, 1346
Alw21I GWGCWC 2 cut(s) 128, 1304
Alw26I GTCTC 4 cut(s) 538, 626, 645, 776
AlwI GGATC 2 cut(s) 85, 111
AlwNI CAGNNNCTG 1 cut(s) 1124
Ama87I CYCGRG 1 cut(s) 635
ApeKI GCWGC 3 cut(s) 734, 1328, 1409
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 1250
Asp718I GGTACC 1 cut(s) 1310
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 289, 1066
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 1310
BanII GRGCYC 1 cut(s) 394
BauI CACGAG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 499
Bbv12I GWGCWC 2 cut(s) 128, 1304
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 746, 1340, 1421
BccI CCATC 5 cut(s) 106, 206, 302, 642, 838
BceAI ACGGC 1 cut(s) 1095
BcgI CGANNNNNNTGC 2 cut(s) 683, 717
BciT130I CCWGG 1 cut(s) 746
BcoDI GTCTC 4 cut(s) 538, 626, 645, 776
BcuI ACTAGT 1 cut(s) 1240
BfaI CTAG 3 cut(s) 791, 1241, 1343
BfmI CTRYAG 1 cut(s) 692
BglII AGATCT 1 cut(s) 208
BisI GCNGC 5 cut(s) 94, 145, 735, 1329, 1410
BlpI GCTNAGC 1 cut(s) 1231
BlsI GCNGC 5 cut(s) 95, 146, 736, 1330, 1411
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 7 cut(s) 51, 247, 292, 322, 433, 1147, 1312
BmrFI CCNGG 1 cut(s) 746
BmrI ACTGGG 1 cut(s) 869
BmsI GCATC 2 cut(s) 989, 1037
BmuI ACTGGG 1 cut(s) 869
BpiI GAAGAC 1 cut(s) 499
BpmI CTGGAG 2 cut(s) 549, 589
Bpu10I CCTNAGC 2 cut(s) 122, 378
Bpu1102I GCTNAGC 1 cut(s) 1231
BpuEI CTTGAG 2 cut(s) 346, 1068
BsaHI GRCGYC 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 2 cut(s) 1175, 1380
BsaXI ACNNNNNCTCC 4 cut(s) 522, 552, 1090, 1120
Bse118I RCCGGY 1 cut(s) 817
Bse1I ACTGG 6 cut(s) 421, 864, 973, 1095, 1129, 1253
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 2 cut(s) 1175, 1380
BseGI GGATG 4 cut(s) 22, 117, 167, 980
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 6 cut(s) 113, 203, 226, 249, 369, 1182
BseNI ACTGG 6 cut(s) 421, 864, 973, 1095, 1129, 1253
BseXI GCAGC 3 cut(s) 746, 1340, 1421
BsgI GTGCAG 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 1310
BsiHKAI GWGCWC 2 cut(s) 128, 1304
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 3 cut(s) 818, 999, 1224
BsmAI GTCTC 4 cut(s) 538, 626, 645, 776
BsmI GAATGC 1 cut(s) 1067
Bso31I GGTCTC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 128, 394, 1304
Bsp143I GATC 5 cut(s) 6, 77, 103, 208, 301
Bsp1720I GCTNAGC 1 cut(s) 1231
BspACI CCGC 2 cut(s) 93, 144
BspCNI CTCAG 6 cut(s) 114, 202, 225, 248, 370, 1183
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 7 cut(s) 51, 247, 292, 322, 433, 1147, 1312
BspMAI CTGCAG 1 cut(s) 696
BspPI GGATC 2 cut(s) 85, 111
BspT107I GGYRCC 1 cut(s) 1310
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 817
BsrI ACTGG 6 cut(s) 421, 864, 973, 1095, 1129, 1253
BssAI RCCGGY 1 cut(s) 817
BssECI CCNNGG 2 cut(s) 1175, 1380
BssMI GATC 5 cut(s) 6, 77, 103, 208, 301
BssNI GRCGYC 1 cut(s) 667
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 2 cut(s) 1175, 1380
Bst2BI CACGAG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 4 cut(s) 770, 928, 1102, 1310
BstACI GRCGYC 1 cut(s) 667
BstAPI GCANNNNNTGC 1 cut(s) 1337
BstC8I GCNNGC 4 cut(s) 363, 819, 909, 1221
BstDEI CTNAG 7 cut(s) 122, 189, 212, 235, 378, 1191, 1231
BstF5I GGATG 4 cut(s) 22, 117, 167, 980
BstKTI GATC 5 cut(s) 9, 80, 106, 211, 304
BstMAI GTCTC 4 cut(s) 538, 626, 645, 776
BstMBI GATC 5 cut(s) 6, 77, 103, 208, 301
BstMWI GCNNNNNNNGC 2 cut(s) 383, 1337
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 744
BstSFI CTRYAG 1 cut(s) 692
BstV1I GCAGC 3 cut(s) 746, 1340, 1421
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 2 cut(s) 77, 208
BstYI RGATCY 2 cut(s) 77, 208
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 4 cut(s) 22, 117, 167, 980
BtsI GCAGTG 2 cut(s) 689, 1176
BtsIMutI CAGTG 6 cut(s) 201, 243, 689, 898, 1098, 1176
Cac8I GCNNGC 4 cut(s) 363, 819, 909, 1221
CaiI CAGNNNCTG 1 cut(s) 1124
CciI TCATGA 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 817
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 1 cut(s) 675
Csp6I GTAC 5 cut(s) 232, 449, 1112, 1311, 1370
CviAII CATG 4 cut(s) 86, 728, 1186, 1260
CviQI GTAC 5 cut(s) 232, 449, 1112, 1311, 1370
DdeI CTNAG 7 cut(s) 122, 189, 212, 235, 378, 1191, 1231
DpnI GATC 5 cut(s) 8, 79, 105, 210, 303
DpnII GATC 5 cut(s) 6, 77, 103, 208, 301
DraI TTTAAA 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 1175, 1380
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 3 cut(s) 210, 225, 938
Eco88I CYCGRG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 2 cut(s) 1175, 1380
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 2 cut(s) 1175, 1380
FaeI CATG 4 cut(s) 89, 731, 1189, 1263
FatI CATG 4 cut(s) 85, 727, 1185, 1259
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 5 cut(s) 94, 145, 735, 1329, 1410
FokI GGATG 4 cut(s) 29, 124, 174, 967
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 5 cut(s) 94, 145, 735, 1329, 1410
FspBI CTAG 3 cut(s) 791, 1241, 1343
GluI GCNGC 5 cut(s) 94, 145, 735, 1329, 1410
GsuI CTGGAG 2 cut(s) 549, 589
HapII CCGG 3 cut(s) 818, 999, 1224
HgaI GACGC 1 cut(s) 675
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 4 cut(s) 89, 731, 1189, 1263
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 1228
HinfI GANTC 3 cut(s) 531, 638, 867
HpaII CCGG 3 cut(s) 818, 999, 1224
HphI GGTGA 2 cut(s) 289, 1066
Hpy166II GTNNAC 3 cut(s) 118, 718, 1246
Hpy188I TCNGA 5 cut(s) 161, 229, 466, 1014, 1192
Hpy8I GTNNAC 3 cut(s) 118, 718, 1246
HpyAV CCTTC 1 cut(s) 1324
HpyCH4III ACNGT 4 cut(s) 770, 928, 1102, 1310
HpyCH4IV ACGT 1 cut(s) 720
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 1337
HpyF3I CTNAG 7 cut(s) 122, 189, 212, 235, 378, 1191, 1231
HpySE526I ACGT 1 cut(s) 720
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 4 cut(s) 89, 731, 1189, 1263
KpnI GGTACC 1 cut(s) 1314
KroI GCCGGC 1 cut(s) 817
KroNI GCCGGC 1 cut(s) 819
Kzo9I GATC 5 cut(s) 6, 77, 103, 208, 301
LmnI GCTCC 8 cut(s) 49, 251, 320, 431, 1111, 1145, 1166, 1299
Lsp1109I GCAGC 3 cut(s) 746, 1340, 1421
LweI GCATC 2 cut(s) 989, 1037
MaeI CTAG 3 cut(s) 791, 1241, 1343
MaeII ACGT 1 cut(s) 720
MaeIII GTNAC 4 cut(s) 607, 964, 1054, 1120
MalI GATC 5 cut(s) 8, 79, 105, 210, 303
MboI GATC 5 cut(s) 6, 77, 103, 208, 301
MboII GAAGA 5 cut(s) 218, 476, 504, 912, 944
MfeI CAATTG 2 cut(s) 285, 1062
MflI RGATCY 2 cut(s) 77, 208
MhlI GDGCHC 3 cut(s) 128, 394, 1304
MluCI AATT 7 cut(s) 155, 285, 468, 549, 594, 785, 1062
MlyI GAGTC 2 cut(s) 540, 647
MmeI TCCRAC 2 cut(s) 910, 1277
MnlI CCTC 8 cut(s) 7, 67, 94, 373, 482, 564, 857, 1020
MroNI GCCGGC 1 cut(s) 817
MroXI GAANNNNTTC 1 cut(s) 1250
MseI TTAA 3 cut(s) 218, 506, 1212
MslI CAYNNNNRTG 2 cut(s) 1241, 1264
MspI CCGG 3 cut(s) 818, 999, 1224
MspR9I CCNGG 1 cut(s) 746
MunI CAATTG 2 cut(s) 285, 1062
Mva1269I GAATGC 1 cut(s) 1067
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 2 cut(s) 383, 1337
NaeI GCCGGC 1 cut(s) 819
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 6, 77, 103, 208, 301
NgoMIV GCCGGC 1 cut(s) 817
NlaIII CATG 4 cut(s) 89, 731, 1189, 1263
NlaIV GGNNCC 7 cut(s) 51, 247, 292, 322, 433, 1147, 1312
NmuCI GTSAC 2 cut(s) 607, 1054
OliI CACNNNNGTG 1 cut(s) 1241
PagI TCATGA 1 cut(s) 727
PctI GAATGC 1 cut(s) 1067
PdiI GCCGGC 1 cut(s) 819
PdmI GAANNNNTTC 1 cut(s) 1250
PfeI GAWTC 1 cut(s) 867
PfoI TCCNGGA 1 cut(s) 744
PkrI GCNGC 5 cut(s) 95, 146, 736, 1330, 1411
PleI GAGTC 2 cut(s) 539, 646
PpsI GAGTC 2 cut(s) 539, 646
PsiI TTATAA 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 7 cut(s) 51, 247, 292, 322, 433, 1147, 1312
PspPI GGNCC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 696
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 2 cut(s) 77, 208
RsaI GTAC 5 cut(s) 233, 450, 1113, 1312, 1371
RsaNI GTAC 5 cut(s) 232, 449, 1112, 1311, 1370
RseI CAYNNNNRTG 2 cut(s) 1241, 1264
SaqAI TTAA 3 cut(s) 218, 506, 1212
SatI GCNGC 5 cut(s) 94, 145, 735, 1329, 1410
Sau3AI GATC 5 cut(s) 6, 77, 103, 208, 301
Sau96I GGNCC 1 cut(s) 290
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 2 cut(s) 540, 647
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 3 cut(s) 128, 394, 1304
SfaNI GCATC 2 cut(s) 989, 1037
SfcI CTRYAG 1 cut(s) 692
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 1241, 1264
SmlI CTYRAG 2 cut(s) 325, 1083
SmoI CTYRAG 2 cut(s) 325, 1083
SpeI ACTAGT 1 cut(s) 1240
Sse9I AATT 7 cut(s) 155, 285, 468, 549, 594, 785, 1062
SsiI CCGC 2 cut(s) 93, 144
SspI AATATT 1 cut(s) 1210
SspMI CTAG 3 cut(s) 791, 1241, 1343
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 2 cut(s) 1175, 1380
TaaI ACNGT 4 cut(s) 770, 928, 1102, 1310
TaiI ACGT 1 cut(s) 723
TaqI TCGA 2 cut(s) 313, 487
TasI AATT 7 cut(s) 155, 285, 468, 549, 594, 785, 1062
TatI WGTACW 2 cut(s) 231, 1111
TauI GCSGC 2 cut(s) 96, 147
TfiI GAWTC 1 cut(s) 867
Tru1I TTAA 3 cut(s) 218, 506, 1212
Tru9I TTAA 3 cut(s) 218, 506, 1212
TscAI CASTG 6 cut(s) 208, 243, 696, 898, 1105, 1176
TseFI GTSAC 2 cut(s) 607, 1054
TseI GCWGC 3 cut(s) 734, 1328, 1409
Tsp45I GTSAC 2 cut(s) 607, 1054
TspDTI ATGAA 7 cut(s) 168, 168, 429, 619, 744, 1129, 1306
TspGWI ACGGA 2 cut(s) 526, 588
TspRI CASTG 6 cut(s) 208, 243, 696, 898, 1105, 1176
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 1250
XspI CTAG 3 cut(s) 791, 1241, 1343
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.