RLG00000012058
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
14878571 .. 14882928
4358 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012058

Sequence Viewer

Length: 1407 bp
ATGGGTCCTCTTGTTTTGATAGTGATCGACTTTAACCAAGCCTCTGACTCTTCAAACGCAGTGAAGACAATCCCAGATTCAGATACGTCGCGAGAGTTGTATAAATCGGGAAGCATGGCGATCAATGAGGATGTGGAGAATGTTGTGCAGGAGAACATAAGGGAGCCACTCGTGAGGGGTACTGGAGAGGGATCTGGTCATGGAAGCAGCAAAGACGATCAATGGATGGTTTACCTGAGCACATTTGTTGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTGGGCTATTCATCGCCTACTCAGTCTGCCATCACGGAAGATCTCAATTTATCAGTGTCAGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGCTATGGAATGGGAGCTTTTTCATATGTTGTACCTGTTTTCATTTCTGAAATTGCACCCAAAAATCTTCGAGGAAGACTAACTGCTTTAAATCAGTTAATGATTGTTTCTGGAGTCTCTGTTTCCTTCATAATTGGGATTCTAGTAAGTTGGAGGGCTTTAGCACTAATAGGACTAATTCCGTGTGCTGTGACCCTTTTCGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCACAAAGATTTTGAAGTTGCACTGCAGAAACTTCGCGGGAATGATGCTGACATATCTCTTGAAGCAGCAGAAATCAAGGAATATATAGCAACTCTTGACAGTCTCCCTAAAGCCAAATTGCTAGATTTGTTTCAAAGGAGATGCTTGCCCTCAGTCTTGATAGCAGTTGGCTTGATGGTCTTTCAACAACTGGGAGGAATCAATGGTGTTTGTTTCTATGTCAGCGATATTTTTGAGCAAGCAGGATTTTCTTCCACCGTTGGAACTATAACCTATGCTATTCTCCAGGTTGTGGTGACAGGCATTGGTGCATCCATAATGGATAAAGCTGGACGAAAGCCTCTGATTTTGAGTTCTGCATCAGGATTGCTACTTGGCTGTGTGGTGACTGCAATTGCATTCTTTCTCACGGCTCAAGAATTGGCTCTCAATGTTGCTCCCGTACTTGCTGTAACTGGCATACTGATCTTTATAGGAGCCTTTTCAATTGGAATGGGAGCAGTACCTTGGATTATTATGTCTGAGATATTCCCTATAAATATTAAAGGGCAGGCCGGAAGCTTAGCCACGCTGGTGAACTGGTTTGGTGCATGGTTGTGTTCCTACACTTTCAACTTCCTTATGAGTTGGAGCACCTACGGTACCTTCATTCTGTATGCAGCAATCAATGCTTTAGCTATAGTTTTTGTGATTTTCTTTGTACCTGAAACCAAGGGGAAAACTCTGGAACAAATCCAAGCAGCCATAAGCAAAGAGAGAAGTGAAGAAAGATAA

Protein Analysis

469

Amino Acids

50.34

Weight (kDa)

5.04

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 114 - 458 1.1e-83 Sugar (and other) transporter
MFS_1 PF07690 116 - 408 1.1e-16 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1274
AccB1I GGYRCC 1 cut(s) 1274
AccB7I CCANNNNNTGG 1 cut(s) 925
AccII CGCG 2 cut(s) 91, 669
AciI CCGC 2 cut(s) 258, 669
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 631
AfaI GTAC 6 cut(s) 181, 414, 1077, 1137, 1276, 1335
AfiI CCNNNNNNNGG 1 cut(s) 925
AgsI TTSAA 7 cut(s) 54, 647, 695, 767, 818, 1119, 1246
AjnI CCWGG 1 cut(s) 918
AleI CACNNNNGTG 1 cut(s) 1205
AluBI AGCT 4 cut(s) 398, 962, 1194, 1310
AluI AGCT 4 cut(s) 398, 962, 1194, 1310
Alw21I GWGCWC 2 cut(s) 242, 1268
Alw26I GTCTC 4 cut(s) 502, 590, 609, 740
AlwI GGATC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 599
AoxI GGCC 1 cut(s) 1185
ApeKI GCWGC 4 cut(s) 207, 698, 1292, 1373
ApoI RAATTY 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 1274
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 3 cut(s) 940, 1030, 1219
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1274
BanII GRGCYC 1 cut(s) 358
BauI CACGAG 1 cut(s) 170
BbsI GAAGAC 2 cut(s) 71, 463
Bbv12I GWGCWC 2 cut(s) 242, 1268
BbvI GCAGC 4 cut(s) 219, 710, 1304, 1385
BccI CCATC 4 cut(s) 220, 320, 606, 802
BceAI ACGGC 1 cut(s) 1059
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 1 cut(s) 920
BcoDI GTCTC 4 cut(s) 502, 590, 609, 740
BfaI CTAG 2 cut(s) 524, 755
BfmI CTRYAG 2 cut(s) 656, 1311
BglII AGATCT 1 cut(s) 322
BisI GCNGC 5 cut(s) 208, 259, 699, 1293, 1374
BlpI GCTNAGC 1 cut(s) 1195
BlsI GCNGC 5 cut(s) 209, 260, 700, 1294, 1375
Bme1390I CCNGG 1 cut(s) 920
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 4 cut(s) 6, 165, 1111, 1276
BmrFI CCNGG 1 cut(s) 920
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 5 cut(s) 266, 667, 764, 953, 1001
BmuI ACTGGG 1 cut(s) 833
BpiI GAAGAC 2 cut(s) 71, 463
BpmI CTGGAG 3 cut(s) 204, 513, 902
Bpu10I CCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 1195
BpuEI CTTGAG 1 cut(s) 1032
BsaBI GATNNNNATC 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 631
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 1139, 1344
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 925
Bse1I ACTGG 5 cut(s) 187, 385, 828, 1093, 1217
Bse8I GATNNNNATC 1 cut(s) 23
BseBI CCWGG 1 cut(s) 920
BseDI CCNNGG 2 cut(s) 1139, 1344
BseGI GGATG 4 cut(s) 136, 231, 281, 944
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 925
BseMII CTCAG 4 cut(s) 227, 317, 798, 1146
BseNI ACTGG 5 cut(s) 187, 385, 828, 1093, 1217
BseXI GCAGC 4 cut(s) 219, 710, 1304, 1385
BsgI GTGCAG 1 cut(s) 167
Bsh1236I CGCG 2 cut(s) 91, 669
BshFI GGCC 1 cut(s) 1187
BshNI GGYRCC 1 cut(s) 1274
BsiHKAI GWGCWC 2 cut(s) 242, 1268
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 1 cut(s) 1188
BslI CCNNNNNNNGG 1 cut(s) 925
BsmAI GTCTC 4 cut(s) 502, 590, 609, 740
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 1 cut(s) 1187
Bso31I GGTCTC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 3 cut(s) 242, 358, 1268
Bsp143I GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
Bsp1720I GCTNAGC 1 cut(s) 1195
Bsp68I TCGCGA 1 cut(s) 91
BspACI CCGC 2 cut(s) 258, 669
BspANI GGCC 1 cut(s) 1187
BspCNI CTCAG 4 cut(s) 228, 316, 797, 1147
BspFNI CGCG 2 cut(s) 91, 669
BspLI GGNNCC 4 cut(s) 6, 165, 1111, 1276
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 1274
BspTNI GGTCTC 1 cut(s) 590
BsrI ACTGG 5 cut(s) 187, 385, 828, 1093, 1217
BssECI CCNNGG 2 cut(s) 1139, 1344
BssMI GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
BssNI GRCGYC 1 cut(s) 631
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 2 cut(s) 1139, 1344
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 920
Bst4CI ACNGT 3 cut(s) 734, 892, 1274
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 631
BstAPI GCANNNNNTGC 1 cut(s) 1301
BstC8I GCNNGC 3 cut(s) 779, 873, 1185
BstDEI CTNAG 5 cut(s) 236, 303, 784, 1155, 1195
BstF5I GGATG 4 cut(s) 136, 231, 281, 944
BstFNI CGCG 2 cut(s) 91, 669
BstKTI GATC 6 cut(s) 27, 123, 194, 220, 325, 1101
BstMAI GTCTC 4 cut(s) 502, 590, 609, 740
BstMBI GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
BstMWI GCNNNNNNNGC 2 cut(s) 285, 1301
BstNI CCWGG 1 cut(s) 920
BstSCI CCNGG 1 cut(s) 918
BstSFI CTRYAG 2 cut(s) 656, 1311
BstUI CGCG 2 cut(s) 91, 669
BstV1I GCAGC 4 cut(s) 219, 710, 1304, 1385
BstV2I GAAGAC 2 cut(s) 71, 463
BstX2I RGATCY 2 cut(s) 191, 322
BstYI RGATCY 2 cut(s) 191, 322
BsuRI GGCC 1 cut(s) 1187
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 4 cut(s) 136, 231, 281, 944
BtsI GCAGTG 2 cut(s) 66, 653
BtsIMutI CAGTG 3 cut(s) 66, 342, 653
BtuMI TCGCGA 1 cut(s) 91
Cac8I GCNNGC 3 cut(s) 779, 873, 1185
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 639
Csp6I GTAC 6 cut(s) 180, 413, 1076, 1136, 1275, 1334
CviAII CATG 3 cut(s) 115, 200, 1224
CviQI GTAC 6 cut(s) 180, 413, 1076, 1136, 1275, 1334
DdeI CTNAG 5 cut(s) 236, 303, 784, 1155, 1195
DpnI GATC 6 cut(s) 26, 122, 193, 219, 324, 1100
DpnII GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 1139, 1344
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 590
Eco47I GGWCC 1 cut(s) 5
Eco88I CYCGRG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 918
EcoT14I CCWWGG 2 cut(s) 1139, 1344
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 2 cut(s) 1139, 1344
FaeI CATG 3 cut(s) 118, 203, 1227
FatI CATG 3 cut(s) 114, 199, 1223
FauI CCCGC 1 cut(s) 662
FauNDI CATATG 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 208, 259, 699, 1293, 1374
FokI GGATG 4 cut(s) 143, 238, 288, 931
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 5 cut(s) 208, 259, 699, 1293, 1374
FspBI CTAG 2 cut(s) 524, 755
GluI GCNGC 5 cut(s) 208, 259, 699, 1293, 1374
GsuI CTGGAG 3 cut(s) 204, 513, 902
HaeIII GGCC 1 cut(s) 1187
HapII CCGG 1 cut(s) 1188
HgaI GACGC 1 cut(s) 639
Hin1I GRCGYC 1 cut(s) 631
Hin1II CATG 3 cut(s) 118, 203, 1227
HindIII AAGCTT 1 cut(s) 1192
HinfI GANTC 6 cut(s) 47, 77, 495, 520, 602, 831
HpaII CCGG 1 cut(s) 1188
HphI GGTGA 3 cut(s) 940, 1030, 1219
Hpy166II GTNNAC 2 cut(s) 232, 1210
Hpy188I TCNGA 7 cut(s) 46, 82, 275, 343, 430, 978, 1156
Hpy8I GTNNAC 2 cut(s) 232, 1210
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 517, 1288
HpyCH4III ACNGT 3 cut(s) 734, 892, 1274
HpyCH4IV ACGT 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 1301
HpyF3I CTNAG 5 cut(s) 236, 303, 784, 1155, 1195
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 631
Hsp92II CATG 3 cut(s) 118, 203, 1227
KpnI GGTACC 1 cut(s) 1278
Kzo9I GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
LmnI GCTCC 6 cut(s) 163, 395, 1075, 1109, 1130, 1263
Lsp1109I GCAGC 4 cut(s) 219, 710, 1304, 1385
LweI GCATC 5 cut(s) 266, 667, 764, 953, 1001
MaeI CTAG 2 cut(s) 524, 755
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 4 cut(s) 571, 928, 1018, 1084
MalI GATC 6 cut(s) 26, 122, 193, 219, 324, 1100
MboI GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
MboII GAAGA 6 cut(s) 42, 76, 332, 440, 468, 876
MfeI CAATTG 2 cut(s) 1026, 1119
MflI RGATCY 2 cut(s) 191, 322
MhlI GDGCHC 3 cut(s) 242, 358, 1268
MluCI AATT 9 cut(s) 269, 328, 432, 513, 558, 749, 1026, 1052, 1119
MlyI GAGTC 3 cut(s) 41, 504, 611
MmeI TCCRAC 3 cut(s) 512, 874, 1241
MseI TTAA 4 cut(s) 33, 470, 479, 1176
MslI CAYNNNNRTG 2 cut(s) 1205, 1228
MspI CCGG 1 cut(s) 1188
MspR9I CCNGG 1 cut(s) 920
MunI CAATTG 2 cut(s) 1026, 1119
Mva1269I GAATGC 1 cut(s) 1031
MvaI CCWGG 1 cut(s) 920
MvnI CGCG 2 cut(s) 91, 669
MwoI GCNNNNNNNGC 2 cut(s) 285, 1301
NdeI CATATG 1 cut(s) 406
NdeII GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
NlaIII CATG 3 cut(s) 118, 203, 1227
NlaIV GGNNCC 4 cut(s) 6, 165, 1111, 1276
NmuCI GTSAC 3 cut(s) 571, 928, 1018
NruI TCGCGA 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 1205
PctI GAATGC 1 cut(s) 1031
PfeI GAWTC 3 cut(s) 77, 520, 831
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 5 cut(s) 209, 260, 700, 1294, 1375
PleI GAGTC 3 cut(s) 41, 503, 610
PpsI GAGTC 3 cut(s) 41, 503, 610
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 918
PspGI CCWGG 1 cut(s) 918
PspN4I GGNNCC 4 cut(s) 6, 165, 1111, 1276
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PstI CTGCAG 1 cut(s) 660
PsuI RGATCY 2 cut(s) 191, 322
RruI TCGCGA 1 cut(s) 91
RsaI GTAC 6 cut(s) 181, 414, 1077, 1137, 1276, 1335
RsaNI GTAC 6 cut(s) 180, 413, 1076, 1136, 1275, 1334
RseI CAYNNNNRTG 2 cut(s) 1205, 1228
SaqAI TTAA 4 cut(s) 33, 470, 479, 1176
SatI GCNGC 5 cut(s) 208, 259, 699, 1293, 1374
Sau3AI GATC 6 cut(s) 24, 120, 191, 217, 322, 1098
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 3 cut(s) 41, 504, 611
ScrFI CCNGG 1 cut(s) 920
SduI GDGCHC 3 cut(s) 242, 358, 1268
SfaNI GCATC 5 cut(s) 266, 667, 764, 953, 1001
SfcI CTRYAG 2 cut(s) 656, 1311
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 2 cut(s) 1205, 1228
SmlI CTYRAG 1 cut(s) 1047
SmoI CTYRAG 1 cut(s) 1047
Sse9I AATT 9 cut(s) 269, 328, 432, 513, 558, 749, 1026, 1052, 1119
SsiI CCGC 2 cut(s) 258, 669
SspI AATATT 1 cut(s) 1174
SspMI CTAG 2 cut(s) 524, 755
StyD4I CCNGG 1 cut(s) 918
StyI CCWWGG 2 cut(s) 1139, 1344
TaaI ACNGT 3 cut(s) 734, 892, 1274
TaiI ACGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 27, 451
TaqII GACCGA 1 cut(s) 572
TasI AATT 9 cut(s) 269, 328, 432, 513, 558, 749, 1026, 1052, 1119
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 3 cut(s) 77, 520, 831
Tru1I TTAA 4 cut(s) 33, 470, 479, 1176
Tru9I TTAA 4 cut(s) 33, 470, 479, 1176
TscAI CASTG 3 cut(s) 66, 342, 660
TseFI GTSAC 3 cut(s) 571, 928, 1018
TseI GCWGC 4 cut(s) 207, 698, 1292, 1373
Tsp45I GTSAC 3 cut(s) 571, 928, 1018
TspDTI ATGAA 7 cut(s) 282, 282, 393, 412, 499, 583, 1270
TspGWI ACGGA 2 cut(s) 332, 552
TspRI CASTG 3 cut(s) 66, 342, 660
Van91I CCANNNNNTGG 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 269
XspI CTAG 2 cut(s) 524, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.