Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000303.1

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

176573 .. 178701

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000303.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtttggcgccatcttgacattcggtgcaatgataggtgctatcacaattgggccgatcactgattttattggtcgaaaaggggcgttgagattttccagtgttgtctgtgttgcaggttggcttgccatttacttttccaagggagctttgcttctggacattgggagaatggcaaaaggatatggaatgggagccttttcatacgtggtacctatatttgttgctgaaattgcacccaaacatcttcgaggaagtctaactgctttgaatcaggttgtggttactggcattggtgcagccataatggataaagctggaagaaagcctctaattttggtatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

115

Amino Acids

12.07

Weight (kDa)

10.01

Isoelectric Point (pI)

11.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	211
AccB1I	GGYRCC	2 cut(s)	8, 211
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	2 cut(s)	149, 317
AluI	AGCT	2 cut(s)	149, 317
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	8, 211
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	3 cut(s)	10, 196, 213
BsaAI	YACGTR	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	99, 292
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	99, 292
BseXI	GCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	2 cut(s)	8, 211
BsnI	GGCC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	10, 196, 213
BspMI	ACCTGC	1 cut(s)	107
BspT107I	GGYRCC	2 cut(s)	8, 211
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	99, 292
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	60, 106
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	212
CviJI	RGCY	7 cut(s)	55, 124, 149, 197, 302, 317, 328
CviKI_1	RGCY	7 cut(s)	55, 124, 149, 197, 302, 317, 328
CviQI	GTAC	1 cut(s)	212
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	141
FaiI	YATR	5 cut(s)	186, 205, 218, 305, 343
Fnu4HI	GCNGC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	300
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	271
Hpy188III	TCNNGA	2 cut(s)	16, 158
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	29, 116, 236, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	1 cut(s)	9
KasI	GGCGCC	1 cut(s)	8
KpnI	GGTACC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	146, 194
LpnPI	CCDG	6 cut(s)	102, 112, 143, 260, 273, 303
Lsp1109I	GCAGC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	2 cut(s)	239, 333
MfeI	CAATTG	1 cut(s)	48
MluCI	AATT	3 cut(s)	48, 231, 333
Mly113I	GGCGCC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	245, 339
MunI	CAATTG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	233
NarI	GGCGCC	1 cut(s)	9
NdeII	GATC	1 cut(s)	57
NlaIV	GGNNCC	3 cut(s)	10, 196, 213
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	10, 196, 213
PspPI	GGNCC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	53
SetI	ASST	7 cut(s)	40, 121, 151, 210, 217, 279, 319
SfoI	GGCGCC	1 cut(s)	10
Sse9I	AATT	3 cut(s)	48, 231, 333
SspDI	GGCGCC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	141
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	76, 250
TasI	AATT	3 cut(s)	48, 231, 333
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	2 cut(s)	67, 106
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	67, 106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.