Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

55085200 .. 55088025

Gene Structure 2826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26213

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGATCAGAGAGGATGTGGAGAATGTTGTGCAGGAGAACATAAGGGAGCCACTCATTAGCGGTACTGGAGAGGGATCTGGTCATGGAAGCAGCAAAGAGGATCAATGGATGGTTTACCTGAGCACATTTGTCGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTAACTGTGGGTTATTCATCGCCTACTCAGTCTGCCATCACGGAAGATCTCAGTTTATCAGTGTCAGAGTACTCAGTGTTTGGCTTCATTCTCACATTTGGTGCAATGATAGGTGTTATCACTATTGGACCCATCACCGATTTTGTTGGTCTTAAAGGGACTGTCCTGTGCTTTGAGCCTTTGACTGCTTTCTCTGTTGTAGGTTGGCTTGCTATTTACTTTGCTGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGATATGGAATGGGAGCCTTTTCATATGTTGTACCAGTTTTCATTTCCGAAATTGCACCCAAAAATCTTCGAGGAAGACTAAGTGCCTTAAATCAGTTAATGATTGTTTCTGGAATCTCTGTTTCCTTCATAATTGGGATTGTAGTAAGTTGGAGGGCTTTAATAGGACTAATTCCGTGTGCTGTGACCCTTTTCGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCACAAAGATTTTGAAGTTGCACTGCAGAAACTTCGGGGGAAAAATGCTGACGTATCTCTTGAAGCAGCAGAAATCCTTTTCTTATCTCAAATTCCTGAAATTCATCTCTTTATTGACCATATCAGAGAGCATTGGGAAGATCATATATCTGATGAAATACCATGTCCCTTCATTGACAGGAGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

288

Amino Acids

31.5

Weight (kDa)

4.84

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	58 - 234	5e-15	Major Facilitator Superfamily
Sugar_tr	PF00083	66 - 251	1.2e-33	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	63, 144
AclWI	GGATC	2 cut(s)	85, 111
AcsI	RAATTY	3 cut(s)	155, 768, 777
AcyI	GRCGYC	1 cut(s)	676
AfaI	GTAC	3 cut(s)	67, 239, 465
AgsI	TTSAA	2 cut(s)	692, 740
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	635, 654
AlwI	GGATC	2 cut(s)	85, 111
Ama87I	CYCGRG	1 cut(s)	644
ApeKI	GCWGC	2 cut(s)	93, 743
ApoI	RAATTY	3 cut(s)	155, 768, 777
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	105, 755
BccI	CCATC	4 cut(s)	106, 212, 308, 651
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 692, 726
BcoDI	GTCTC	2 cut(s)	635, 654
BfmI	CTRYAG	1 cut(s)	701
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	3 cut(s)	94, 145, 744
BlsI	GCNGC	3 cut(s)	95, 146, 745
BmcAI	AGTACT	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	3 cut(s)	51, 298, 448
BmsI	GCATC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	514
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	2 cut(s)	122, 393
BsaHI	GRCGYC	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	635
Bse1I	ACTGG	3 cut(s)	73, 436, 467
Bse3DI	GCAATG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	22, 117, 167
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	5 cut(s)	113, 209, 232, 255, 384
BseNI	ACTGG	3 cut(s)	73, 436, 467
BseXI	GCAGC	2 cut(s)	105, 755
BsgI	GTGCAG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	644
BslFI	GGGAC	2 cut(s)	340, 828
BsmAI	GTCTC	2 cut(s)	635, 654
BsmFI	GGGAC	2 cut(s)	340, 828
Bso31I	GGTCTC	1 cut(s)	635
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	128, 409
Bsp143I	GATC	5 cut(s)	6, 77, 103, 214, 817
BspACI	CCGC	2 cut(s)	63, 144
BspCNI	CTCAG	5 cut(s)	114, 208, 231, 254, 385
BspLI	GGNNCC	3 cut(s)	51, 298, 448
BspMAI	CTGCAG	1 cut(s)	705
BspPI	GGATC	2 cut(s)	85, 111
BspTNI	GGTCTC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	73, 436, 467
BssMI	GATC	5 cut(s)	6, 77, 103, 214, 817
BssNI	GRCGYC	1 cut(s)	676
Bst4CI	ACNGT	2 cut(s)	175, 331
BstACI	GRCGYC	1 cut(s)	676
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	6 cut(s)	122, 195, 218, 241, 393, 512
BstF5I	GGATG	3 cut(s)	22, 117, 167
BstKTI	GATC	5 cut(s)	9, 80, 106, 217, 820
BstMAI	GTCTC	2 cut(s)	635, 654
BstMBI	GATC	5 cut(s)	6, 77, 103, 214, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	105, 755
BstV2I	GAAGAC	1 cut(s)	514
BstX2I	RGATCY	2 cut(s)	77, 214
BstYI	RGATCY	2 cut(s)	77, 214
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	22, 117, 167
BtsI	GCAGTG	1 cut(s)	698
BtsIMutI	CAGTG	3 cut(s)	234, 249, 698
Cac8I	GCNNGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	684
Csp6I	GTAC	3 cut(s)	66, 238, 464
CviAII	CATG	2 cut(s)	86, 840
CviJI	RGCY	8 cut(s)	52, 147, 252, 346, 376, 407, 449, 590
CviKI_1	RGCY	8 cut(s)	52, 147, 252, 346, 376, 407, 449, 590
CviQI	GTAC	3 cut(s)	66, 238, 464
DdeI	CTNAG	6 cut(s)	122, 195, 218, 241, 393, 512
DpnI	GATC	5 cut(s)	8, 79, 105, 216, 819
DpnII	GATC	5 cut(s)	6, 77, 103, 214, 817
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	409
FaeI	CATG	2 cut(s)	89, 843
FaqI	GGGAC	2 cut(s)	340, 828
FatI	CATG	2 cut(s)	85, 839
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	94, 145, 744
FokI	GGATG	3 cut(s)	29, 124, 174
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	3 cut(s)	94, 145, 744
GluI	GCNGC	3 cut(s)	94, 145, 744
GsuI	CTGGAG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	684
Hin1I	GRCGYC	1 cut(s)	676
Hin1II	CATG	2 cut(s)	89, 843
HinfI	GANTC	2 cut(s)	546, 647
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	6 cut(s)	11, 161, 235, 481, 803, 829
Hpy188III	TCNNGA	5 cut(s)	410, 543, 644, 737, 773
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	568, 856
HpyCH4III	ACNGT	2 cut(s)	175, 331
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	5 cut(s)	34, 272, 488, 698, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	6 cut(s)	122, 195, 218, 241, 393, 512
HpySE526I	ACGT	1 cut(s)	729
Hsp92I	GRCGYC	1 cut(s)	676
Hsp92II	CATG	2 cut(s)	89, 843
Kzo9I	GATC	5 cut(s)	6, 77, 103, 214, 817
LmnI	GCTCC	2 cut(s)	49, 446
Lsp1109I	GCAGC	2 cut(s)	105, 755
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	2 cut(s)	169, 616
MalI	GATC	5 cut(s)	8, 79, 105, 216, 819
MboI	GATC	5 cut(s)	6, 77, 103, 214, 817
MboII	GAAGA	4 cut(s)	224, 491, 519, 827
MflI	RGATCY	2 cut(s)	77, 214
MhlI	GDGCHC	2 cut(s)	128, 409
MluCI	AATT	6 cut(s)	155, 483, 564, 603, 768, 777
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	6 cut(s)	7, 67, 94, 388, 497, 579
MseI	TTAA	4 cut(s)	321, 521, 530, 593
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	5 cut(s)	6, 77, 103, 214, 817
NlaIII	CATG	2 cut(s)	89, 843
NlaIV	GGNNCC	3 cut(s)	51, 298, 448
NmuCI	GTSAC	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	546
PkrI	GCNGC	3 cut(s)	95, 146, 745
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PspN4I	GGNNCC	3 cut(s)	51, 298, 448
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	705
PsuI	RGATCY	2 cut(s)	77, 214
RsaI	GTAC	3 cut(s)	67, 239, 465
RsaNI	GTAC	3 cut(s)	66, 238, 464
SaqAI	TTAA	4 cut(s)	321, 521, 530, 593
SatI	GCNGC	3 cut(s)	94, 145, 744
Sau3AI	GATC	5 cut(s)	6, 77, 103, 214, 817
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	656
SduI	GDGCHC	2 cut(s)	128, 409
SetI	ASST	4 cut(s)	123, 283, 373, 732
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	701
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	6 cut(s)	155, 483, 564, 603, 768, 777
SsiI	CCGC	2 cut(s)	63, 144
TaaI	ACNGT	2 cut(s)	175, 331
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	1 cut(s)	502
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	6 cut(s)	155, 483, 564, 603, 768, 777
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	4 cut(s)	321, 521, 530, 593
Tru9I	TTAA	4 cut(s)	321, 521, 530, 593
TscAI	CASTG	3 cut(s)	234, 249, 705
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	2 cut(s)	93, 743
Tsp45I	GTSAC	1 cut(s)	616
TspGWI	ACGGA	2 cut(s)	224, 597
TspRI	CASTG	3 cut(s)	234, 249, 705
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	3 cut(s)	155, 768, 777
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.