Rorug06G0223500
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
35725622 .. 35726016
395 bp
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UTR
Exon/CDS
Intron
Rorug06G0223500.1

Sequence Viewer

Length: 369 bp
ATGGTTGATCCACAACAAGATGGAAAAAAAAATGGGAATTATGAGCAGTGGACCAAGGAAGAGAGTGATACCTTATTAGAACTAATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCATCTTAAGTAAGCAAATAGTGGAAGAAAGAATACTTCCTGTTCTTAATGCAAAACTTGGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGGTTAGATGGTTTAAAGGTCGATGGAACTCTTACTCTACCCTTATGCGTTTTAGCTCTGGTTTTGGATTTGATTCAACTACAAAGAGGTTTACTGCTTCTAATGAAGTATGGGAGGAATACCTTAAGGTAAGCTTCCTAAATACTATATAA

Protein Analysis

122

Amino Acids

14.3

Weight (kDa)

9.04

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 113 6.3e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 2
AfiI CCNNNNNNNGG 2 cut(s) 102, 217
AflII CTTAAG 2 cut(s) 130, 341
AgsI TTSAA 1 cut(s) 294
AluBI AGCT 2 cut(s) 273, 351
AluI AGCT 2 cut(s) 273, 351
AlwI GGATC 1 cut(s) 2
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BccI CCATC 4 cut(s) 14, 102, 219, 234
BceAI ACGGC 1 cut(s) 83
BfrI CTTAAG 2 cut(s) 130, 341
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 82, 135
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 217
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 102, 217
BslI CCNNNNNNNGG 2 cut(s) 102, 217
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 2
BspTI CTTAAG 2 cut(s) 130, 341
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 2 cut(s) 130, 341
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 51
CviJI RGCY 2 cut(s) 273, 351
CviKI_1 RGCY 2 cut(s) 273, 351
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaiI YATR 5 cut(s) 42, 263, 328, 365, 367
FalI AAGNNNNNCTT 2 cut(s) 335, 367
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 51, 309
Hpy8I GTNNAC 2 cut(s) 51, 309
HpyCH4V TGCA 1 cut(s) 176
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 3 cut(s) 177, 202, 261
LweI GCATC 2 cut(s) 82, 135
MaeIII GTNAC 2 cut(s) 113, 188
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 71, 161
MluCI AATT 1 cut(s) 37
MnlI CCTC 2 cut(s) 297, 325
MseI TTAA 4 cut(s) 131, 171, 231, 342
MspCI CTTAAG 2 cut(s) 130, 341
NdeII GATC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 113, 188
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 131, 171, 231, 342
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 51
SetI ASST 8 cut(s) 74, 200, 238, 275, 308, 342, 348, 353
SfaNI GCATC 2 cut(s) 82, 135
SgeI CNNG 8 cut(s) 29, 67, 125, 176, 194, 205, 229, 288
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 130, 341
SmoI CTYRAG 2 cut(s) 130, 341
Sse9I AATT 1 cut(s) 37
SsiI CCGC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 238
TasI AATT 1 cut(s) 37
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 131, 171, 231, 342
Tru9I TTAA 4 cut(s) 131, 171, 231, 342
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 2 cut(s) 113, 188
Tsp45I GTSAC 2 cut(s) 113, 188
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 1 cut(s) 53
Vha464I CTTAAG 2 cut(s) 130, 341
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.