Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

14886082 .. 14889387

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCGATCAGAGAGGATGTGGAGAATGTTGTGCAGGACAACATAAGGGAGCCACTCATTAGGGGTACTGGAGAGGGATCTGGTCATGGAAGCAGCAAAGAGGATCAATGGATGGTTTACCTGAGCACATTTGTCGCAGTTTGCGGCTCTTATGAATTTGGATGCTGTGTGGGTTATTCATCGCCTACTCAGTCTGCCATCACGGAAGATCTCAGTTTATCAGTGTCAGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGATATGGAATGGGAGCCTTTTCATATGTTGTACCTGTTTTCATTTCTGAAATTGCACCCAAAAATCTTCGAGGAAGACTAAGTGCCTTGAATCAGTTAATGATTGTTTCTGGAATCTCTGTTTCCTTCATAATTGGGATTGTAGCAAGTTGGAGGGCTTTAGCACTTATAGGACTAATTCCGTGTGCTGTGACCCTTTTCGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCACAAAGATTTTGAAGTTGCACTGCAGAAACTTCGGGGGAAAAATGCTGACGTATCTCTTGAAGCAGCAGAAATCAAGGATTACATAGAAACTCTTGACAGTCTCCCTAAAGCCAAATTGCTAGGCTTGTTTCAGAGGAGATACTTGCCCTCAGTCTTGATAGCAGTGGGCTTGATGGTCTTTCAAGAACTGGGAGGAATCAATGGTGTCTGTTTCTATGTCGGTGATATTTTTGAGCAAGCAGGATTTTCTTCCACCGTTGGAACTATAACCTACGCTATTCTCCAGGTTGTGGTAACTGGCATTGGTGCATCCATAATGGATAAAGCTGGACGAAAGCCTCTGATTTTGACTTCTGCATCAGGATTGCTACTTGGCTATGTGGTGACTGCAATTGCATTCTTTCTCACGGCTCAAGAATTGGCTCTCAATGTTGCTCCCGTACTTGCTGTTACTGGCATACTGATCTTCGTAGGAGCCTTTTCAATAGGAATGGGAGCAGTACCTTGGCTTATTATGTCTGAAATATTCCCTATAAATATTAAAGGGCAGGCCGGAAGCTTAGCCACGCTGGTGAACTGGTTTGGTGCATGGTTGTGTTCCTACACTTTCAACTTCCTTATGAGTTGGAGCACCTATGGTACCTTCATTCTGTATGCAGCAATCAATGCTCTAGCTATAGTTTTTGTGATTTTCTTTGTACCTGAAACAAAGGGGAAAACTCTGGAACAAATCCAAGCAGCCATAAGCAAAGAGAGAAGTGAAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

431

Amino Acids

46.36

Weight (kDa)

5.46

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	76 - 420	2.7e-82	Sugar (and other) transporter
MFS_1	PF07690	77 - 370	1.4e-15	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1160
AccB1I	GGYRCC	1 cut(s)	1160
AccB7I	CCANNNNNTGG	1 cut(s)	811
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	85, 111
AcsI	RAATTY	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	517
AfaI	GTAC	6 cut(s)	67, 300, 963, 1023, 1162, 1221
AfiI	CCNNNNNNNGG	1 cut(s)	811
AgsI	TTSAA	6 cut(s)	358, 533, 581, 704, 1005, 1132
AjnI	CCWGG	1 cut(s)	804
AleI	CACNNNNGTG	1 cut(s)	1091
AluBI	AGCT	3 cut(s)	848, 1080, 1196
AluI	AGCT	3 cut(s)	848, 1080, 1196
Alw21I	GWGCWC	2 cut(s)	128, 1154
Alw26I	GTCTC	3 cut(s)	476, 495, 626
AlwI	GGATC	2 cut(s)	85, 111
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	1071
ApeKI	GCWGC	4 cut(s)	93, 584, 1178, 1259
ApoI	RAATTY	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	1160
AsuHPI	GGTGA	3 cut(s)	755, 916, 1105
AvaI	CYCGRG	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	1160
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	128, 1154
BbvI	GCAGC	4 cut(s)	105, 596, 1190, 1271
BccI	CCATC	4 cut(s)	106, 206, 492, 688
BceAI	ACGGC	1 cut(s)	945
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 533, 567
BciT130I	CCWGG	1 cut(s)	806
BcoDI	GTCTC	3 cut(s)	476, 495, 626
BfaI	CTAG	2 cut(s)	641, 1193
BfmI	CTRYAG	2 cut(s)	542, 1197
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	5 cut(s)	94, 145, 585, 1179, 1260
BlpI	GCTNAGC	1 cut(s)	1081
BlsI	GCNGC	5 cut(s)	95, 146, 586, 1180, 1261
Bme1390I	CCNGG	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	4 cut(s)	51, 283, 997, 1162
BmrFI	CCNGG	1 cut(s)	806
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	3 cut(s)	152, 839, 887
BmuI	ACTGGG	1 cut(s)	719
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	2 cut(s)	90, 788
Bpu10I	CCTNAGC	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	1081
BpuEI	CTTGAG	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	517
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	1025
Bsc4I	CCNNNNNNNGG	1 cut(s)	811
Bse1I	ACTGG	6 cut(s)	73, 271, 714, 823, 979, 1103
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	1 cut(s)	1025
BseGI	GGATG	4 cut(s)	22, 117, 167, 830
BseLI	CCNNNNNNNGG	1 cut(s)	811
BseMII	CTCAG	4 cut(s)	113, 203, 226, 684
BseNI	ACTGG	6 cut(s)	73, 271, 714, 823, 979, 1103
BseRI	GAGGAG	1 cut(s)	670
BseXI	GCAGC	4 cut(s)	105, 596, 1190, 1271
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	1073
BshNI	GGYRCC	1 cut(s)	1160
BsiHKAI	GWGCWC	2 cut(s)	128, 1154
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	1074
BslI	CCNNNNNNNGG	1 cut(s)	811
BsmAI	GTCTC	3 cut(s)	476, 495, 626
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	1 cut(s)	1073
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	3 cut(s)	128, 244, 1154
Bsp143I	GATC	5 cut(s)	6, 77, 103, 208, 984
Bsp1720I	GCTNAGC	1 cut(s)	1081
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	1073
BspCNI	CTCAG	4 cut(s)	114, 202, 225, 683
BspLI	GGNNCC	4 cut(s)	51, 283, 997, 1162
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	2 cut(s)	85, 111
BspT107I	GGYRCC	1 cut(s)	1160
BspTNI	GGTCTC	1 cut(s)	476
BsrI	ACTGG	6 cut(s)	73, 271, 714, 823, 979, 1103
BssECI	CCNNGG	1 cut(s)	1025
BssMI	GATC	5 cut(s)	6, 77, 103, 208, 984
BssNI	GRCGYC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	1025
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	2 cut(s)	620, 778
BstACI	GRCGYC	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	1187
BstC8I	GCNNGC	2 cut(s)	759, 1071
BstDEI	CTNAG	6 cut(s)	122, 189, 212, 347, 670, 1081
BstF5I	GGATG	4 cut(s)	22, 117, 167, 830
BstKTI	GATC	5 cut(s)	9, 80, 106, 211, 987
BstMAI	GTCTC	3 cut(s)	476, 495, 626
BstMBI	GATC	5 cut(s)	6, 77, 103, 208, 984
BstMWI	GCNNNNNNNGC	1 cut(s)	1187
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	2 cut(s)	542, 1197
BstV1I	GCAGC	4 cut(s)	105, 596, 1190, 1271
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	2 cut(s)	77, 208
BstYI	RGATCY	2 cut(s)	77, 208
BsuRI	GGCC	1 cut(s)	1073
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	22, 117, 167, 830
BtsI	GCAGTG	2 cut(s)	539, 690
BtsIMutI	CAGTG	3 cut(s)	228, 539, 690
Cac8I	GCNNGC	2 cut(s)	759, 1071
CseI	GACGC	1 cut(s)	525
Csp6I	GTAC	6 cut(s)	66, 299, 962, 1022, 1161, 1220
CviAII	CATG	2 cut(s)	86, 1110
CviQI	GTAC	6 cut(s)	66, 299, 962, 1022, 1161, 1220
DdeI	CTNAG	6 cut(s)	122, 189, 212, 347, 670, 1081
DpnI	GATC	5 cut(s)	8, 79, 105, 210, 986
DpnII	GATC	5 cut(s)	6, 77, 103, 208, 984
Eco130I	CCWWGG	1 cut(s)	1025
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	476
Eco88I	CYCGRG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	1 cut(s)	1025
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	1025
FaeI	CATG	2 cut(s)	89, 1113
FatI	CATG	2 cut(s)	85, 1109
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	94, 145, 585, 1179, 1260
FokI	GGATG	4 cut(s)	29, 124, 174, 817
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	5 cut(s)	94, 145, 585, 1179, 1260
FspBI	CTAG	2 cut(s)	641, 1193
GluI	GCNGC	5 cut(s)	94, 145, 585, 1179, 1260
GsuI	CTGGAG	2 cut(s)	90, 788
HaeIII	GGCC	1 cut(s)	1073
HapII	CCGG	1 cut(s)	1074
HgaI	GACGC	1 cut(s)	525
Hin1I	GRCGYC	1 cut(s)	517
Hin1II	CATG	2 cut(s)	89, 1113
HindIII	AAGCTT	1 cut(s)	1078
HinfI	GANTC	4 cut(s)	358, 381, 488, 717
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	3 cut(s)	755, 916, 1105
Hpy166II	GTNNAC	2 cut(s)	118, 1096
Hpy188I	TCNGA	6 cut(s)	11, 229, 316, 654, 864, 1042
Hpy8I	GTNNAC	2 cut(s)	118, 1096
HpyAV	CCTTC	2 cut(s)	403, 1174
HpyCH4III	ACNGT	2 cut(s)	620, 778
HpyCH4IV	ACGT	1 cut(s)	570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1187
HpyF3I	CTNAG	6 cut(s)	122, 189, 212, 347, 670, 1081
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	89, 1113
KpnI	GGTACC	1 cut(s)	1164
Kzo9I	GATC	5 cut(s)	6, 77, 103, 208, 984
LmnI	GCTCC	6 cut(s)	49, 281, 961, 995, 1016, 1149
Lsp1109I	GCAGC	4 cut(s)	105, 596, 1190, 1271
LweI	GCATC	3 cut(s)	152, 839, 887
MaeI	CTAG	2 cut(s)	641, 1193
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	4 cut(s)	457, 814, 904, 970
MalI	GATC	5 cut(s)	8, 79, 105, 210, 986
MboI	GATC	5 cut(s)	6, 77, 103, 208, 984
MboII	GAAGA	5 cut(s)	218, 326, 354, 762, 979
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	2 cut(s)	77, 208
MhlI	GDGCHC	3 cut(s)	128, 244, 1154
MluCI	AATT	7 cut(s)	155, 318, 399, 444, 635, 912, 938
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	3 cut(s)	398, 760, 1127
MseI	TTAA	2 cut(s)	365, 1062
MslI	CAYNNNNRTG	2 cut(s)	1091, 1114
MspI	CCGG	1 cut(s)	1074
MspR9I	CCNGG	1 cut(s)	806
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	1 cut(s)	1187
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	5 cut(s)	6, 77, 103, 208, 984
NlaIII	CATG	2 cut(s)	89, 1113
NlaIV	GGNNCC	4 cut(s)	51, 283, 997, 1162
NmuCI	GTSAC	2 cut(s)	457, 904
OliI	CACNNNNGTG	1 cut(s)	1091
PctI	GAATGC	1 cut(s)	917
PfeI	GAWTC	3 cut(s)	358, 381, 717
PflMI	CCANNNNNTGG	1 cut(s)	811
PkrI	GCNGC	5 cut(s)	95, 146, 586, 1180, 1261
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	4 cut(s)	51, 283, 997, 1162
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	77, 208
RsaI	GTAC	6 cut(s)	67, 300, 963, 1023, 1162, 1221
RsaNI	GTAC	6 cut(s)	66, 299, 962, 1022, 1161, 1220
RseI	CAYNNNNRTG	2 cut(s)	1091, 1114
SaqAI	TTAA	2 cut(s)	365, 1062
SatI	GCNGC	5 cut(s)	94, 145, 585, 1179, 1260
Sau3AI	GATC	5 cut(s)	6, 77, 103, 208, 984
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	3 cut(s)	128, 244, 1154
SfaNI	GCATC	3 cut(s)	152, 839, 887
SfcI	CTRYAG	2 cut(s)	542, 1197
SmiMI	CAYNNNNRTG	2 cut(s)	1091, 1114
SmlI	CTYRAG	1 cut(s)	933
SmoI	CTYRAG	1 cut(s)	933
Sse9I	AATT	7 cut(s)	155, 318, 399, 444, 635, 912, 938
SsiI	CCGC	1 cut(s)	144
SspI	AATATT	2 cut(s)	1047, 1060
SspMI	CTAG	2 cut(s)	641, 1193
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	1 cut(s)	1025
TaaI	ACNGT	2 cut(s)	620, 778
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	1 cut(s)	337
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	7 cut(s)	155, 318, 399, 444, 635, 912, 938
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	3 cut(s)	358, 381, 717
Tru1I	TTAA	2 cut(s)	365, 1062
Tru9I	TTAA	2 cut(s)	365, 1062
TscAI	CASTG	3 cut(s)	228, 546, 690
TseFI	GTSAC	2 cut(s)	457, 904
TseI	GCWGC	4 cut(s)	93, 584, 1178, 1259
Tsp45I	GTSAC	2 cut(s)	457, 904
TspDTI	ATGAA	7 cut(s)	168, 168, 279, 298, 385, 469, 1156
TspGWI	ACGGA	2 cut(s)	218, 438
TspRI	CASTG	3 cut(s)	228, 546, 690
Van91I	CCANNNNNTGG	1 cut(s)	811
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	2 cut(s)	641, 1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.