Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000502.1

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

43099 .. 46508

Gene Structure 3410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000502.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atggccaacaaagaggatgtagagaactcaagagagccactcatgaacagagatggatcagctcatgaagggcatcaatggatggtttacctcagcacattcgttgctgtctgtggctcttatgagtttggatgctgtgcaggtttttcgtctcctactcaggacgccatcactgaagatcttagtttgtcattagcagagtattcaatgtttggctcccttttgacatttggtgcaatgattggtgctatcacgattggtcccatcgctgatttcattggtcgaaaaggggccatgagactgtccagtgctttatgtgttgcaggttggctagctatatactttgctgagttaatgatctgtgctggagtgtccgtttcatacataattgggatagtagtgagttggagggctctagcattaataggacttattccgtgtgctgtgatcattttcggcctctttttcattcccgagtctccaagatggttggcaaagacaggaaatcacacagagtttgaagttgcactacagaaacttcgtggtgaagatgctgatgtatcgcatgaagcagcggaaatccaggattatatagcaacacttgaccatctcccgaaagccaaaatgctcgatttgtttcaaaggagatactcacgctcagtcattataggagttgggttgatggtctgtcaacaatttggggggatcaacggggtctgtttctatgtcagcagtatttttgagcaagcaggattttcttcaagcatcggaactataacctatgctattcttcaggttgtggttactggcattggtgcagctgtaatggataaagctggaagaaagcctctaattttgatttctggatcagggttggtacttggctgtgtcctgactgcaatttcattctttctgaaggttaatgacttggcactcggtgcagttggtgcacttgctgtaactggcatattggtctatataggatcattttcaataggaatgggagcagttccttgggttgtgatgtctgagatattcccaatcaatattaaaggacaggctggaagcttagcaacgttaatgaactggtttggagcatggttgtgttcctacactttcaacttcctgatgagttggagctcctatggcaccttcattctgtatgcagcaattaatggcctgggtatagtgtttgtggttttcttagtacctgaaacaaaggggaaaacccttgaacaaatccaagccgccattaacaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

420

Amino Acids

45.04

Weight (kDa)

5.44

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	131, 314
AccB1I	GGYRCC	1 cut(s)	1148
AciI	CCGC	2 cut(s)	575, 1248
AclI	AACGTT	1 cut(s)	1076
AclWI	GGATC	4 cut(s)	64, 713, 874, 991
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	3 cut(s)	195, 776, 935
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	2 cut(s)	879, 1209
AgsI	TTSAA	7 cut(s)	207, 521, 641, 762, 993, 1120, 1235
AjnI	CCWGG	2 cut(s)	582, 1179
AluBI	AGCT	6 cut(s)	62, 335, 821, 836, 1068, 1140
AluI	AGCT	6 cut(s)	62, 335, 821, 836, 1068, 1140
Alw21I	GWGCWC	2 cut(s)	952, 1142
Alw26I	GTCTC	3 cut(s)	156, 292, 483
Alw44I	GTGCAC	1 cut(s)	948
AlwI	GGATC	4 cut(s)	64, 713, 874, 991
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	4 cut(s)	3, 291, 457, 1177
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	3 cut(s)	572, 818, 1166
AseI	ATTAAT	2 cut(s)	422, 1173
AspS9I	GGNCC	2 cut(s)	260, 291
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	952
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1148
BanII	GRGCYC	2 cut(s)	415, 1142
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
Bbv12I	GWGCWC	2 cut(s)	952, 1142
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	584, 830, 1178
BccI	CCATC	7 cut(s)	47, 76, 176, 272, 480, 615, 676
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	2 cut(s)	584, 1181
BclI	TGATCA	1 cut(s)	447
BcoDI	GTCTC	3 cut(s)	156, 292, 483
BfaI	CTAG	2 cut(s)	332, 416
BfmI	CTRYAG	1 cut(s)	530
BfuAI	ACCTGC	2 cut(s)	131, 314
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	4 cut(s)	573, 819, 1167, 1248
BlpI	GCTNAGC	1 cut(s)	1069
BlsI	GCNGC	4 cut(s)	574, 820, 1168, 1249
Bme1390I	CCNGG	2 cut(s)	584, 1181
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	260, 291
BmiI	GGNNCC	4 cut(s)	217, 262, 292, 1150
BmrFI	CCNGG	2 cut(s)	584, 1181
BmsI	GCATC	4 cut(s)	82, 122, 541, 774
BmtI	GCTAGC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	1069
BpuEI	CTTGAG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	1013, 1180
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse1I	ACTGG	4 cut(s)	306, 811, 967, 1091
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	584, 1181
BseDI	CCNNGG	2 cut(s)	1013, 1180
BseGI	GGATG	3 cut(s)	22, 87, 137
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	5 cut(s)	106, 173, 339, 672, 1020
BseNI	ACTGG	4 cut(s)	306, 811, 967, 1091
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	3 cut(s)	584, 830, 1178
BsgI	GTGCAG	3 cut(s)	159, 837, 960
BshFI	GGCC	4 cut(s)	5, 293, 459, 1179
BshNI	GGYRCC	1 cut(s)	1148
BsiHKAI	GWGCWC	2 cut(s)	952, 1142
BsiHKCI	CYCGRG	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	246
BsmAI	GTCTC	3 cut(s)	156, 292, 483
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	5, 293, 459, 1179
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	3 cut(s)	415, 952, 1142
Bsp143I	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
Bsp1720I	GCTNAGC	1 cut(s)	1069
BspACI	CCGC	2 cut(s)	575, 1248
BspANI	GGCC	4 cut(s)	5, 293, 459, 1179
BspCNI	CTCAG	5 cut(s)	105, 172, 340, 671, 1021
BspHI	TCATGA	2 cut(s)	42, 64
BspLI	GGNNCC	4 cut(s)	217, 262, 292, 1150
BspMI	ACCTGC	2 cut(s)	131, 314
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	4 cut(s)	64, 713, 874, 991
BspT107I	GGYRCC	1 cut(s)	1148
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	4 cut(s)	306, 811, 967, 1091
BssECI	CCNNGG	2 cut(s)	1013, 1180
BssMI	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	1013
Bst2UI	CCWGG	2 cut(s)	584, 1181
Bst4CI	ACNGT	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	2 cut(s)	938, 947
BstC8I	GCNNGC	2 cut(s)	333, 747
BstDEI	CTNAG	8 cut(s)	92, 159, 182, 348, 658, 1029, 1069, 1204
BstF5I	GGATG	3 cut(s)	22, 87, 137
BstKTI	GATC	7 cut(s)	59, 181, 360, 450, 708, 869, 986
BstMAI	GTCTC	3 cut(s)	156, 292, 483
BstMBI	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	938, 947, 1146
BstNI	CCWGG	2 cut(s)	584, 1181
BstSCI	CCNGG	2 cut(s)	582, 1179
BstSFI	CTRYAG	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	952
BstV1I	GCAGC	3 cut(s)	584, 830, 1178
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	4 cut(s)	5, 293, 459, 1179
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	22, 87, 137
BtsIMutI	CAGTG	2 cut(s)	171, 313
BveI	ACCTGC	2 cut(s)	131, 314
Cac8I	GCNNGC	2 cut(s)	333, 747
CciI	TCATGA	2 cut(s)	42, 64
Cfr13I	GGNCC	2 cut(s)	260, 291
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	878, 1208
CviAII	CATG	5 cut(s)	43, 65, 295, 566, 1098
CviQI	GTAC	2 cut(s)	878, 1208
DdeI	CTNAG	8 cut(s)	92, 159, 182, 348, 658, 1029, 1069, 1204
DpnI	GATC	7 cut(s)	58, 180, 359, 449, 707, 868, 985
DpnII	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
DraIII	CACNNNGTG	1 cut(s)	938
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	1140
Eco130I	CCWWGG	1 cut(s)	1013
Eco24I	GRGCYC	2 cut(s)	415, 1142
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	1140
Eco57I	CTGAAG	3 cut(s)	195, 776, 935
Eco88I	CYCGRG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	1140
EcoRII	CCWGG	2 cut(s)	582, 1179
EcoT14I	CCWWGG	1 cut(s)	1013
EcoT38I	GRGCYC	2 cut(s)	415, 1142
ErhI	CCWWGG	1 cut(s)	1013
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	5 cut(s)	46, 68, 298, 569, 1101
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	5 cut(s)	42, 64, 294, 565, 1097
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	4 cut(s)	573, 819, 1167, 1248
FokI	GGATG	3 cut(s)	29, 94, 144
FriOI	GRGCYC	2 cut(s)	415, 1142
Fsp4HI	GCNGC	4 cut(s)	573, 819, 1167, 1248
FspBI	CTAG	2 cut(s)	332, 416
GluI	GCNGC	4 cut(s)	573, 819, 1167, 1248
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	5, 293, 459, 1179
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	46, 68, 298, 569, 1101
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	1066
HinfI	GANTC	1 cut(s)	476
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	88, 692, 950
Hpy188I	TCNGA	3 cut(s)	770, 915, 1030
Hpy8I	GTNNAC	3 cut(s)	88, 692, 950
HpyAV	CCTTC	3 cut(s)	62, 910, 1162
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	1 cut(s)	1076
HpyCH4V	TGCA	9 cut(s)	140, 236, 323, 527, 818, 899, 941, 950, 1166
HpyF10VI	GCNNNNNNNGC	3 cut(s)	938, 947, 1146
HpyF3I	CTNAG	8 cut(s)	92, 159, 182, 348, 658, 1029, 1069, 1204
HpySE526I	ACGT	1 cut(s)	1076
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	46, 68, 298, 569, 1101
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
LmnI	GCTCC	5 cut(s)	221, 1004, 1094, 1137, 1145
Lsp1109I	GCAGC	3 cut(s)	584, 830, 1178
LweI	GCATC	4 cut(s)	82, 122, 541, 774
MaeI	CTAG	2 cut(s)	332, 416
MaeII	ACGT	1 cut(s)	1076
MaeIII	GTNAC	2 cut(s)	802, 958
MalI	GATC	7 cut(s)	58, 180, 359, 449, 707, 868, 985
MboI	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
MboII	GAAGA	5 cut(s)	188, 560, 750, 782, 852
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	3 cut(s)	415, 952, 1142
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	387, 695, 852, 900, 1170
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	386, 1115
MnlI	CCTC	5 cut(s)	7, 101, 402, 470, 858
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	353, 422, 921, 1050, 1079, 1173, 1254
MslI	CAYNNNNRTG	1 cut(s)	1102
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	575, 821
MspR9I	CCNGG	2 cut(s)	584, 1181
MvaI	CCWGG	2 cut(s)	584, 1181
MwoI	GCNNNNNNNGC	3 cut(s)	938, 947, 1146
NdeII	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	5 cut(s)	46, 68, 298, 569, 1101
NlaIV	GGNNCC	4 cut(s)	217, 262, 292, 1150
PagI	TCATGA	2 cut(s)	42, 64
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	4 cut(s)	574, 820, 1168, 1249
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PshBI	ATTAAT	2 cut(s)	422, 1173
Psp124BI	GAGCTC	1 cut(s)	1142
Psp1406I	AACGTT	1 cut(s)	1076
Psp6I	CCWGG	2 cut(s)	582, 1179
PspGI	CCWGG	2 cut(s)	582, 1179
PspN4I	GGNNCC	4 cut(s)	217, 262, 292, 1150
PspPI	GGNCC	2 cut(s)	260, 291
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	2 cut(s)	879, 1209
RsaNI	GTAC	2 cut(s)	878, 1208
RseI	CAYNNNNRTG	1 cut(s)	1102
SacI	GAGCTC	1 cut(s)	1142
SaqAI	TTAA	7 cut(s)	353, 422, 921, 1050, 1079, 1173, 1254
SatI	GCNGC	4 cut(s)	573, 819, 1167, 1248
Sau3AI	GATC	7 cut(s)	56, 178, 357, 447, 705, 866, 983
Sau96I	GGNCC	2 cut(s)	260, 291
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	584, 1181
SduI	GDGCHC	3 cut(s)	415, 952, 1142
SfaNI	GCATC	4 cut(s)	82, 122, 541, 774
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	1102
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	5 cut(s)	387, 695, 852, 900, 1170
SsiI	CCGC	2 cut(s)	575, 1248
SspI	AATATT	1 cut(s)	1048
SspMI	CTAG	2 cut(s)	332, 416
SstI	GAGCTC	1 cut(s)	1142
StyD4I	CCNGG	2 cut(s)	582, 1179
StyI	CCWWGG	1 cut(s)	1013
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	1 cut(s)	1079
TaqI	TCGA	2 cut(s)	283, 630
TasI	AATT	5 cut(s)	387, 695, 852, 900, 1170
TauI	GCSGC	1 cut(s)	1250
Tru1I	TTAA	7 cut(s)	353, 422, 921, 1050, 1079, 1173, 1254
Tru9I	TTAA	7 cut(s)	353, 422, 921, 1050, 1079, 1173, 1254
TscAI	CASTG	2 cut(s)	178, 313
TseI	GCWGC	3 cut(s)	572, 818, 1166
TspDTI	ATGAA	9 cut(s)	59, 81, 265, 369, 457, 582, 894, 1097, 1144
TspGWI	ACGGA	2 cut(s)	364, 426
TspRI	CASTG	2 cut(s)	178, 313
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	2 cut(s)	422, 1173
XspI	CTAG	2 cut(s)	332, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.