Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

35693544 .. 35693876

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0223300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTGAAATTCCTGTTATCGGATGTGCTTGAAGGAAAGCCAAGTTCTGCAGCCCCTACAAAAAAGGTGAAAACCCCTGAGTTCACCACTAAGAGCACAGCTAAATCTTTGCGACTTGTTGAAACCCCAAGTGGTATGCTTGTGCCTGGGGAGGTAATGATGCCAAGGACTTTACAACTTGAAGAGCAAAGCACAAGAAAGAAGCGGGGGAGACCTCTGGGCTCGAAGAATAAGAACCCTTCAAAATCCAAAAAGGTATCCGCTGATGAAGTCCTAAGTATGTTGTACTCAGAGAAACCTCCTAGCCCTAGCTTGATGTGCAAGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

10.0

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	205, 261
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	32, 122, 182, 243
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	101, 312
AluI	AGCT	2 cut(s)	101, 312
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	76, 79
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	303, 309
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	268
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	146, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	146, 164
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	69, 303
BseXI	GCAGC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	98, 224
BspACI	CCGC	2 cut(s)	205, 261
BspCNI	CTCAG	2 cut(s)	70, 302
BspMAI	CTGCAG	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	146, 164
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	78, 90, 275, 289
BstF5I	GGATG	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	286
CviJI	RGCY	6 cut(s)	40, 53, 101, 222, 306, 312
CviKI_1	RGCY	6 cut(s)	40, 53, 101, 222, 306, 312
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	78, 90, 275, 289
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	164
FaiI	YATR	2 cut(s)	137, 281
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	303, 309
GluI	GCNGC	1 cut(s)	51
HphI	GGTGA	2 cut(s)	76, 79
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	22, 292
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	26, 249
HpyCH4V	TGCA	2 cut(s)	50, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	4 cut(s)	78, 90, 275, 289
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	5 cut(s)	26, 90, 132, 159, 203
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	303, 309
MboII	GAAGA	2 cut(s)	194, 238
MhlI	GDGCHC	2 cut(s)	98, 224
MluCI	AATT	1 cut(s)	8
MnlI	CCTC	3 cut(s)	145, 225, 309
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	98, 224
SetI	ASST	7 cut(s)	69, 103, 156, 217, 258, 301, 314
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	2 cut(s)	205, 261
SspMI	CTAG	2 cut(s)	303, 309
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	164
TaqI	TCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	8
TatI	WGTACW	1 cut(s)	285
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	282
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	2 cut(s)	303, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.