Rh6BG344100
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
57589932 .. 57593706
3775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG344100.1

Sequence Viewer

Length: 1407 bp
ATGGCCAGTCGTGAAGAGAATTCTGCACATCATGAGGTAAGAAAGCCACTCGTGGATGGTGGATTGGATCATGGAACCAAAGAGGATCAATGGATGGTGTACATGAGCACGTTCGTCGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTGGGTTATTCTTCGCCTACGCAATCAGCCATTAGGGAAGATCTCAATTTATCATTAGCACAGTTTTCAATGTTCGGCGCCATCTTGACATTCGGTGCAATGATAGGTGCTATCACAATTGGGCCGATCACTGATTTTATTGGTCGAAAAGGGGCGTTGAGATTTTCCAGTGTTGTCTGTGTTGCAGGTTGGCTTGCCATTTACTTTTCCAAGGGAGCTTTGCTTCTGGACATTGGGAGAATGGCAAAAGGATATGGAATGGGAGCCTTTTCATACGTGGTACCTATATTTGTTGCTGAAATTGCACCCAAACATCTTCGAGGAAGTCTAACTGCTTTGAATCAGTTGATGATCGTTGCTGGAGTGTCAGTGTCCTTCGTAATTGGGGTAGTAGTAAGTTGGAGGACTTTAGCATTAATTGGACTTATTCCCTGTGCTGTGACCATTTTTGGTCTGTTTTTTATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGAAACCAAAAAGATTTTGAAGATGCACTGCAGAAACTTCGTGGCAGAGATGCCGACATATCTCAAGAAGCAGAAGAAATCCAGGATTATATAGCAACTCTTGACCGGCTCCCTAAAGCCAAATTGCTGGATCTGTTTGAAAGGAGATACTCACGCTCTCTCATTATATCAGTTGGCTTGATGATCTGTCAACAATTGGGAGGAATAAACGGGGTCTGTTTCTATGTCAGCAATATTTTTGAGCAAGCAGGATTTTCTTCCAGCTTGGGAACTATAATCTACGCTGTTCTTCAGGTTGTGGTTACTGGCATTGGTGCAGCCATAATGGATAAAGCTGGAAGAAAGCCTCTAATTTTGACTTCTGCAACAGGGTTGTTGCTTGGCTGCGTCCTGACTGCCATTTCATTCTTTCTGAAGGTTCATCAACTGTCAGCCGAGGCAGTTCCCATACTTGCAGTAACTGGCATATTGGTATTCATAGGATCCTTTTCAATAGGAATGGGAGCAGTTCCATGGGTTCTGATGTCAGAGATATTCCCTATAAATATTAAAGGACAGGCAGGAAGCTTTGCAACCCTAGTGAACTGGTTTGGTGCATGGTTGTGCTCCTATACCTTCAACTTTCTTATGAGTTGGAGCTCCTACGGTACCTTTATTCTGTACGCAGTAATCAATGCTCTGGCCATATTGTTCGTGATTGTGATGGTACCTGAGACAAAGGGTAGAACCCTGGAACAAATCCAAGCATCCATTAACAAATAA

Protein Analysis

468

Amino Acids

50.66

Weight (kDa)

8.01

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 53 - 414 4.1e-27 Major Facilitator Superfamily
Sugar_tr PF00083 59 - 463 8e-94 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
Acc65I GGTACC 3 cut(s) 430, 1292, 1351
AccB1I GGYRCC 4 cut(s) 227, 430, 1292, 1351
AciI CCGC 1 cut(s) 126
AclWI GGATC 5 cut(s) 75, 93, 783, 1122, 1135
AcoI YGGCCR 2 cut(s) 3, 1326
AcsI RAATTY 2 cut(s) 19, 137
AcuI CTGAAG 2 cut(s) 920, 1079
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 5 cut(s) 101, 432, 1294, 1307, 1353
AgsI TTSAA 6 cut(s) 219, 490, 665, 785, 1137, 1264
AjnI CCWGG 2 cut(s) 726, 1374
AluBI AGCT 5 cut(s) 368, 909, 980, 1212, 1284
AluI AGCT 5 cut(s) 368, 909, 980, 1212, 1284
Alw21I GWGCWC 3 cut(s) 110, 1253, 1286
Alw26I GTCTC 2 cut(s) 627, 1352
AlwI GGATC 5 cut(s) 75, 93, 783, 1122, 1135
AlwNI CAGNNNCTG 1 cut(s) 1106
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 3 cut(s) 3, 272, 1326
ApeKI GCWGC 2 cut(s) 962, 1029
ApoI RAATTY 2 cut(s) 19, 137
AseI ATTAAT 1 cut(s) 566
Asp718I GGTACC 3 cut(s) 430, 1292, 1351
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 617
BalI TGGCCA 2 cut(s) 5, 1328
BamHI GGATCC 1 cut(s) 1127
BanI GGYRCC 4 cut(s) 227, 430, 1292, 1351
BanII GRGCYC 1 cut(s) 1286
BauI CACGAG 1 cut(s) 50
Bbv12I GWGCWC 3 cut(s) 110, 1253, 1286
BbvI GCAGC 2 cut(s) 974, 1016
BccI CCATC 5 cut(s) 50, 88, 239, 624, 1342
BcgI CGANNNNNNTGC 4 cut(s) 97, 131, 665, 699
BciT130I CCWGG 2 cut(s) 728, 1376
BcoDI GTCTC 2 cut(s) 627, 1352
BfaI CTAG 1 cut(s) 1223
BfmI CTRYAG 1 cut(s) 674
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 326
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 127, 963, 1030
BlsI GCNGC 3 cut(s) 128, 964, 1031
Bme1390I CCNGG 2 cut(s) 728, 1376
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 8 cut(s) 76, 229, 415, 432, 755, 1129, 1294, 1353
BmrFI CCNGG 2 cut(s) 728, 1376
BmsI GCATC 4 cut(s) 134, 658, 685, 1400
BpmI CTGGAG 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 693
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 360, 1080, 1157, 1374
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 5 cut(s) 6, 318, 955, 1111, 1235
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 2 cut(s) 728, 1376
BseDI CCNNGG 4 cut(s) 360, 1080, 1157, 1374
BseGI GGATG 4 cut(s) 61, 99, 149, 1391
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 1347
BseNI ACTGG 5 cut(s) 6, 318, 955, 1111, 1235
BseXI GCAGC 2 cut(s) 974, 1016
BsgI GTGCAG 2 cut(s) 9, 981
BshFI GGCC 3 cut(s) 5, 274, 1328
BshNI GGYRCC 4 cut(s) 227, 430, 1292, 1351
BsiHKAI GWGCWC 3 cut(s) 110, 1253, 1286
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 1 cut(s) 751
BsmAI GTCTC 2 cut(s) 627, 1352
BsnI GGCC 3 cut(s) 5, 274, 1328
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 3 cut(s) 110, 1253, 1286
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
Bsp19I CCATGG 1 cut(s) 1157
BspACI CCGC 1 cut(s) 126
BspANI GGCC 3 cut(s) 5, 274, 1328
BspCNI CTCAG 1 cut(s) 1348
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 8 cut(s) 76, 229, 415, 432, 755, 1129, 1294, 1353
BspMAI CTGCAG 1 cut(s) 678
BspMI ACCTGC 1 cut(s) 326
BspPI GGATC 5 cut(s) 75, 93, 783, 1122, 1135
BspT107I GGYRCC 4 cut(s) 227, 430, 1292, 1351
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 750
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 5 cut(s) 6, 318, 955, 1111, 1235
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 4 cut(s) 360, 1080, 1157, 1374
BssMI GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
BssNI GRCGYC 1 cut(s) 228
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 360, 1157
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 728, 1376
Bst4CI ACNGT 3 cut(s) 213, 1074, 1292
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 345, 891
BstDEI CTNAG 1 cut(s) 1356
BstDSI CCRYGG 1 cut(s) 1157
BstF5I GGATG 4 cut(s) 61, 99, 149, 1391
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 8 cut(s) 70, 88, 193, 279, 504, 778, 831, 1130
BstMAI GTCTC 2 cut(s) 627, 1352
BstMBI GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNI CCWGG 2 cut(s) 728, 1376
BstSCI CCNGG 2 cut(s) 726, 1374
BstSFI CTRYAG 1 cut(s) 674
BstV1I GCAGC 2 cut(s) 974, 1016
BstX2I RGATCY 3 cut(s) 190, 775, 1127
BstXI CCANNNNNNTGG 1 cut(s) 772
BstYI RGATCY 3 cut(s) 190, 775, 1127
BsuRI GGCC 3 cut(s) 5, 274, 1328
BtgI CCRYGG 1 cut(s) 1157
BtsCI GGATG 4 cut(s) 61, 99, 149, 1391
BtsI GCAGTG 1 cut(s) 671
BtsIMutI CAGTG 4 cut(s) 279, 325, 525, 671
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 2 cut(s) 345, 891
CaiI CAGNNNCTG 1 cut(s) 1106
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 1021
Csp6I GTAC 5 cut(s) 100, 431, 1293, 1306, 1352
CviAII CATG 5 cut(s) 32, 71, 103, 1158, 1242
CviQI GTAC 5 cut(s) 100, 431, 1293, 1306, 1352
DdeI CTNAG 1 cut(s) 1356
DinI GGCGCC 1 cut(s) 229
DpnI GATC 8 cut(s) 69, 87, 192, 278, 503, 777, 830, 1129
DpnII GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
EaeI YGGCCR 2 cut(s) 3, 1326
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 1284
Eco130I CCWWGG 2 cut(s) 360, 1157
Eco24I GRGCYC 1 cut(s) 1286
Eco53kI GAGCTC 1 cut(s) 1284
Eco57I CTGAAG 2 cut(s) 920, 1079
Eco88I CYCGRG 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 1284
EcoRI GAATTC 2 cut(s) 19, 137
EcoRII CCWGG 2 cut(s) 726, 1374
EcoT14I CCWWGG 2 cut(s) 360, 1157
EcoT38I GRGCYC 1 cut(s) 1286
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 360, 1157
FaeI CATG 5 cut(s) 35, 74, 106, 1161, 1245
FatI CATG 5 cut(s) 31, 70, 102, 1157, 1241
Fnu4HI GCNGC 3 cut(s) 127, 963, 1030
FokI GGATG 4 cut(s) 68, 106, 156, 1378
FriOI GRGCYC 1 cut(s) 1286
Fsp4HI GCNGC 3 cut(s) 127, 963, 1030
FspBI CTAG 1 cut(s) 1223
GlaI GCGC 1 cut(s) 229
GluI GCNGC 3 cut(s) 127, 963, 1030
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 3 cut(s) 5, 274, 1328
HapII CCGG 1 cut(s) 751
HgaI GACGC 1 cut(s) 1021
HhaI GCGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 5 cut(s) 35, 74, 106, 1161, 1245
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HincII GTYRAC 1 cut(s) 836
HindII GTYRAC 1 cut(s) 836
HindIII AAGCTT 1 cut(s) 1210
HinfI GANTC 2 cut(s) 490, 620
HpaII CCGG 1 cut(s) 751
Hpy166II GTNNAC 3 cut(s) 100, 836, 1228
Hpy188I TCNGA 4 cut(s) 143, 1059, 1167, 1174
Hpy188III TCNNGA 9 cut(s) 11, 32, 235, 377, 617, 710, 746, 1036, 1339
Hpy8I GTNNAC 3 cut(s) 100, 836, 1228
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 535, 1054, 1270
HpyCH4III ACNGT 3 cut(s) 213, 1074, 1292
HpyCH4IV ACGT 2 cut(s) 110, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 1 cut(s) 1356
HpySE526I ACGT 2 cut(s) 110, 426
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 5 cut(s) 35, 74, 106, 1161, 1245
HspAI GCGC 1 cut(s) 228
KasI GGCGCC 1 cut(s) 227
KpnI GGTACC 3 cut(s) 434, 1296, 1355
Kzo9I GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
LmnI GCTCC 7 cut(s) 365, 413, 759, 1148, 1256, 1281, 1289
Lsp1109I GCAGC 2 cut(s) 974, 1016
LweI GCATC 4 cut(s) 134, 658, 685, 1400
MaeI CTAG 1 cut(s) 1223
MaeII ACGT 2 cut(s) 110, 426
MaeIII GTNAC 3 cut(s) 589, 946, 1102
MalI GATC 8 cut(s) 69, 87, 192, 278, 503, 777, 830, 1129
MboI GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
MboII GAAGA 9 cut(s) 26, 153, 200, 458, 677, 731, 894, 926, 996
MfeI CAATTG 2 cut(s) 267, 839
MflI RGATCY 3 cut(s) 190, 775, 1127
MhlI GDGCHC 3 cut(s) 110, 1253, 1286
MlsI TGGCCA 2 cut(s) 5, 1328
MluNI TGGCCA 2 cut(s) 5, 1328
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 1 cut(s) 629
MmeI TCCRAC 2 cut(s) 530, 1259
MnlI CCTC 7 cut(s) 28, 76, 464, 546, 839, 1002, 1075
Mox20I TGGCCA 2 cut(s) 5, 1328
MscI TGGCCA 2 cut(s) 5, 1328
MseI TTAA 3 cut(s) 566, 1194, 1398
MslI CAYNNNNRTG 1 cut(s) 1246
Msp20I TGGCCA 2 cut(s) 5, 1328
MspI CCGG 1 cut(s) 751
MspR9I CCNGG 2 cut(s) 728, 1376
MunI CAATTG 2 cut(s) 267, 839
MvaI CCWGG 2 cut(s) 728, 1376
MwoI GCNNNNNNNGC 1 cut(s) 452
NarI GGCGCC 1 cut(s) 228
NcoI CCATGG 1 cut(s) 1157
NdeII GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
NlaIII CATG 5 cut(s) 35, 74, 106, 1161, 1245
NlaIV GGNNCC 8 cut(s) 76, 229, 415, 432, 755, 1129, 1294, 1353
NmeAIII GCCGAG 1 cut(s) 1105
NmuCI GTSAC 1 cut(s) 589
PagI TCATGA 1 cut(s) 31
PfeI GAWTC 1 cut(s) 490
PfoI TCCNGGA 1 cut(s) 726
PkrI GCNGC 3 cut(s) 128, 964, 1031
PleI GAGTC 1 cut(s) 628
PluTI GGCGCC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 628
Ppu21I YACGTR 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 1286
Psp6I CCWGG 2 cut(s) 726, 1374
PspGI CCWGG 2 cut(s) 726, 1374
PspN4I GGNNCC 8 cut(s) 76, 229, 415, 432, 755, 1129, 1294, 1353
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 678
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 3 cut(s) 190, 775, 1127
RsaI GTAC 5 cut(s) 101, 432, 1294, 1307, 1353
RsaNI GTAC 5 cut(s) 100, 431, 1293, 1306, 1352
RseI CAYNNNNRTG 1 cut(s) 1246
SacI GAGCTC 1 cut(s) 1286
SaqAI TTAA 3 cut(s) 566, 1194, 1398
SatI GCNGC 3 cut(s) 127, 963, 1030
Sau3AI GATC 8 cut(s) 67, 85, 190, 276, 501, 775, 828, 1127
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 2 cut(s) 728, 1376
SduI GDGCHC 3 cut(s) 110, 1253, 1286
SfaNI GCATC 4 cut(s) 134, 658, 685, 1400
SfcI CTRYAG 1 cut(s) 674
SfoI GGCGCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 1246
SmlI CTYRAG 1 cut(s) 708
SmoI CTYRAG 1 cut(s) 708
SsiI CCGC 1 cut(s) 126
SspDI GGCGCC 1 cut(s) 227
SspI AATATT 2 cut(s) 880, 1192
SspMI CTAG 1 cut(s) 1223
SstI GAGCTC 1 cut(s) 1286
StyD4I CCNGG 2 cut(s) 726, 1374
StyI CCWWGG 2 cut(s) 360, 1157
TaaI ACNGT 3 cut(s) 213, 1074, 1292
TaiI ACGT 2 cut(s) 113, 429
TaqI TCGA 2 cut(s) 295, 469
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 3 cut(s) 566, 1194, 1398
Tru9I TTAA 3 cut(s) 566, 1194, 1398
TscAI CASTG 4 cut(s) 286, 325, 525, 678
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 962, 1029
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 5 cut(s) 150, 411, 1038, 1055, 1111
TspRI CASTG 4 cut(s) 286, 325, 525, 678
VspI ATTAAT 1 cut(s) 566
XapI RAATTY 2 cut(s) 19, 137
XspI CTAG 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.