Rh6AG337100
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
53750009 .. 53753274
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG337100.1

Sequence Viewer

Length: 1443 bp
ATGGCGATCAATGAGGATGTGGAGAATGTTGTGCAGGAGAACATAAGGGAGCCACTCATGAAGGGTACTGGAGAGGGATCTGGTCATGGAAGCAGCAAAGAGGATCAATGGATGGTTTACCTGAGCACATTTGTCGCAGTTTGTGGCTCTTATGAATTCGGATGCTGTGTGGGTTATTCATCGCCTACTCAGTCTGCCATCACGGAAGATCTCAATTTATCAGTGTCGGAGTACTCAGTGTTTGGCTCCATTCTCACATTTGGTGCAATGATAGGTGCTATCACAATTGGACCCATCACCGATGTTGTTGGTCGAAAAGGGGCCTTGAGAATGTCCTGTGCTTTCTGTGTTGCAGGTTGGCTTGCTATTTACTTTGCTGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGATATGGAATGGGAGCTTTTTCATATGTTGTACCTGTTTTCATTTCTGAAATTGCACCCAAAAATCTTCGAGGAAGACTAACTGCTTTAAATCAGTTAATGATTGTTTCTGGAGTCTCTGTTTCCTTTATAATTGGGATTGTAGTAAGTTGGAGGGCTTTAGCACTAATAGGACTAATTCCGTGTGCTGTGACCCTTTTCGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCACAGAGATTTTGAAGTTGCACTACAGAAACTTCGCGGGAAAGATGCTGACGTATCTCTTGAAGCAGCAGAAATCAAGGAATATATAGCAACTATTGACAGTCTCCCTAAAGCCAAATTGCTAGATTTGTTTCAAAGGAGATACTTGCCCTCAGTCTTGATAGCAGTTGGCTTGATGGTCTTTCAACAACTGGGAGGAATCAATGGCGTTTGTTTCTATGTCAGTGATATTTTTGAGCAAGCAGGATTTTCTTCCACTGTTGGAACTATAACCTATGCTATTCTCCAGGTTGTGGTAACTGGCATTGGTGCATCCATAATGGATAAAGCTGGACGAAAGCCTCTGATTTTGAGTTCTGCATCAGGATTGCTACTTGGCTGTGTAGTGACTGCAATTGCATTCTTTCTCACGGCTCAAGAATTGGCTCTCAATGTTGCTCCCGTACTTGCTGTAACTGGCATACTGATCTTTATAGGAGCCTTTTCAATTGGAATGGGAGCAGTACCTTGGATTATTATGTCTGAGATATTCCCTATAAATATTAAAGGGCAGGCCGGAAGCTTAGCCACGCTAGTGAACTGGTTTGGTGCATGGTTGTGTTCCTACACTTTCAACTTCCTTATGAGTTGGAGCACCTATGGTACCTTCATTCTGTATGCAGCAATCAATGCTTTAGCTATAGTTTTTGTGATTTTCTTTGTACCTGAAACAAAGGGGAAAACTCTGGAACAAATCCAAGCAGCCATAAGCAAAGAGAGAAGTGAAGAAAGATAA

Protein Analysis

480

Amino Acids

51.62

Weight (kDa)

5.48

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 59 - 419 1.1e-27 Major Facilitator Superfamily
Sugar_tr PF00083 65 - 470 7.6e-95 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 344
Acc65I GGTACC 1 cut(s) 1310
AccB1I GGYRCC 1 cut(s) 1310
AccB7I CCANNNNNTGG 1 cut(s) 961
AccII CGCG 1 cut(s) 705
AciI CCGC 1 cut(s) 705
AclWI GGATC 2 cut(s) 85, 111
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 7 cut(s) 67, 233, 450, 1113, 1173, 1312, 1371
AfiI CCNNNNNNNGG 1 cut(s) 961
AgsI TTSAA 6 cut(s) 683, 731, 803, 854, 1155, 1282
AjnI CCWGG 1 cut(s) 954
AleI CACNNNNGTG 1 cut(s) 1241
AluBI AGCT 4 cut(s) 434, 998, 1230, 1346
AluI AGCT 4 cut(s) 434, 998, 1230, 1346
Alw21I GWGCWC 2 cut(s) 128, 1304
Alw26I GTCTC 4 cut(s) 538, 626, 645, 776
AlwI GGATC 2 cut(s) 85, 111
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 2 cut(s) 321, 1221
ApeKI GCWGC 4 cut(s) 93, 734, 1328, 1409
ApoI RAATTY 1 cut(s) 155
Asp718I GGTACC 1 cut(s) 1310
AspS9I GGNCC 2 cut(s) 290, 321
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 1310
BanII GRGCYC 1 cut(s) 394
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
BbsI GAAGAC 1 cut(s) 499
Bbv12I GWGCWC 2 cut(s) 128, 1304
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 4 cut(s) 105, 746, 1340, 1421
BccI CCATC 5 cut(s) 106, 206, 302, 642, 838
BceAI ACGGC 1 cut(s) 1095
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 956
BcoDI GTCTC 4 cut(s) 538, 626, 645, 776
BfaI CTAG 2 cut(s) 791, 1241
BfmI CTRYAG 2 cut(s) 692, 1347
BfuAI ACCTGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 208
BisI GCNGC 4 cut(s) 94, 735, 1329, 1410
BlpI GCTNAGC 1 cut(s) 1231
BlsI GCNGC 4 cut(s) 95, 736, 1330, 1411
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 956
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 2 cut(s) 290, 321
BmiI GGNNCC 6 cut(s) 51, 247, 292, 322, 1147, 1312
BmrFI CCNGG 1 cut(s) 956
BmrI ACTGGG 1 cut(s) 869
BmsI GCATC 4 cut(s) 152, 703, 989, 1037
BmuI ACTGGG 1 cut(s) 869
BpiI GAAGAC 1 cut(s) 499
BpmI CTGGAG 3 cut(s) 90, 549, 938
Bpu10I CCTNAGC 2 cut(s) 122, 378
Bpu1102I GCTNAGC 1 cut(s) 1231
BpuEI CTTGAG 2 cut(s) 346, 1068
BsaHI GRCGYC 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 1 cut(s) 1175
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 961
Bse1I ACTGG 6 cut(s) 73, 421, 864, 973, 1129, 1253
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 956
BseDI CCNNGG 1 cut(s) 1175
BseGI GGATG 4 cut(s) 22, 117, 167, 980
BseLI CCNNNNNNNGG 1 cut(s) 961
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 6 cut(s) 113, 203, 249, 369, 834, 1182
BseNI ACTGG 6 cut(s) 73, 421, 864, 973, 1129, 1253
BseXI GCAGC 4 cut(s) 105, 746, 1340, 1421
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 705
BshFI GGCC 2 cut(s) 323, 1223
BshNI GGYRCC 1 cut(s) 1310
BsiHKAI GWGCWC 2 cut(s) 128, 1304
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 1 cut(s) 1224
BslI CCNNNNNNNGG 1 cut(s) 961
BsmAI GTCTC 4 cut(s) 538, 626, 645, 776
BsmI GAATGC 1 cut(s) 1067
BsnI GGCC 2 cut(s) 323, 1223
Bso31I GGTCTC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 128, 394, 1304
Bsp143I GATC 5 cut(s) 6, 77, 103, 208, 1134
Bsp1720I GCTNAGC 1 cut(s) 1231
BspACI CCGC 1 cut(s) 705
BspANI GGCC 2 cut(s) 323, 1223
BspCNI CTCAG 6 cut(s) 114, 202, 248, 370, 833, 1183
BspFNI CGCG 1 cut(s) 705
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 6 cut(s) 51, 247, 292, 322, 1147, 1312
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 2 cut(s) 85, 111
BspT107I GGYRCC 1 cut(s) 1310
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 6 cut(s) 73, 421, 864, 973, 1129, 1253
BssECI CCNNGG 1 cut(s) 1175
BssMI GATC 5 cut(s) 6, 77, 103, 208, 1134
BssNI GRCGYC 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 1175
Bst2UI CCWGG 1 cut(s) 956
Bst4CI ACNGT 2 cut(s) 770, 928
BstACI GRCGYC 1 cut(s) 667
BstAPI GCANNNNNTGC 1 cut(s) 1337
BstC8I GCNNGC 3 cut(s) 363, 909, 1221
BstDEI CTNAG 7 cut(s) 122, 189, 235, 378, 820, 1191, 1231
BstF5I GGATG 4 cut(s) 22, 117, 167, 980
BstFNI CGCG 1 cut(s) 705
BstKTI GATC 5 cut(s) 9, 80, 106, 211, 1137
BstMAI GTCTC 4 cut(s) 538, 626, 645, 776
BstMBI GATC 5 cut(s) 6, 77, 103, 208, 1134
BstMWI GCNNNNNNNGC 2 cut(s) 383, 1337
BstNI CCWGG 1 cut(s) 956
BstSCI CCNGG 1 cut(s) 954
BstSFI CTRYAG 2 cut(s) 692, 1347
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 4 cut(s) 105, 746, 1340, 1421
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 2 cut(s) 77, 208
BstYI RGATCY 2 cut(s) 77, 208
BsuRI GGCC 2 cut(s) 323, 1223
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 4 cut(s) 22, 117, 167, 980
BtsIMutI CAGTG 4 cut(s) 228, 243, 898, 924
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 363, 909, 1221
CciI TCATGA 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 290, 321
CseI GACGC 1 cut(s) 675
Csp6I GTAC 7 cut(s) 66, 232, 449, 1112, 1172, 1311, 1370
CviAII CATG 3 cut(s) 58, 86, 1260
CviQI GTAC 7 cut(s) 66, 232, 449, 1112, 1172, 1311, 1370
DdeI CTNAG 7 cut(s) 122, 189, 235, 378, 820, 1191, 1231
DpnI GATC 5 cut(s) 8, 79, 105, 210, 1136
DpnII GATC 5 cut(s) 6, 77, 103, 208, 1134
DraI TTTAAA 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 1175
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 954
EcoT14I CCWWGG 1 cut(s) 1175
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 1175
FaeI CATG 3 cut(s) 61, 89, 1263
FatI CATG 3 cut(s) 57, 85, 1259
FauI CCCGC 1 cut(s) 698
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 94, 735, 1329, 1410
FokI GGATG 4 cut(s) 29, 124, 174, 967
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 4 cut(s) 94, 735, 1329, 1410
FspBI CTAG 2 cut(s) 791, 1241
GluI GCNGC 4 cut(s) 94, 735, 1329, 1410
GsuI CTGGAG 3 cut(s) 90, 549, 938
HaeIII GGCC 2 cut(s) 323, 1223
HapII CCGG 1 cut(s) 1224
HgaI GACGC 1 cut(s) 675
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 3 cut(s) 61, 89, 1263
HindIII AAGCTT 1 cut(s) 1228
HinfI GANTC 3 cut(s) 531, 638, 867
HpaII CCGG 1 cut(s) 1224
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 118, 1246
Hpy188I TCNGA 5 cut(s) 161, 229, 466, 1014, 1192
Hpy188III TCNNGA 9 cut(s) 58, 395, 528, 635, 728, 826, 1032, 1085, 1394
Hpy8I GTNNAC 2 cut(s) 118, 1246
HpyAV CCTTC 2 cut(s) 55, 1324
HpyCH4III ACNGT 2 cut(s) 770, 928
HpyCH4IV ACGT 1 cut(s) 720
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 1337
HpyF3I CTNAG 7 cut(s) 122, 189, 235, 378, 820, 1191, 1231
HpySE526I ACGT 1 cut(s) 720
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 3 cut(s) 61, 89, 1263
KpnI GGTACC 1 cut(s) 1314
Kzo9I GATC 5 cut(s) 6, 77, 103, 208, 1134
LmnI GCTCC 7 cut(s) 49, 251, 431, 1111, 1145, 1166, 1299
Lsp1109I GCAGC 4 cut(s) 105, 746, 1340, 1421
LweI GCATC 4 cut(s) 152, 703, 989, 1037
MaeI CTAG 2 cut(s) 791, 1241
MaeII ACGT 1 cut(s) 720
MaeIII GTNAC 4 cut(s) 607, 964, 1054, 1120
MalI GATC 5 cut(s) 8, 79, 105, 210, 1136
MboI GATC 5 cut(s) 6, 77, 103, 208, 1134
MboII GAAGA 4 cut(s) 218, 476, 504, 912
MfeI CAATTG 3 cut(s) 285, 1062, 1155
MflI RGATCY 2 cut(s) 77, 208
MhlI GDGCHC 3 cut(s) 128, 394, 1304
MlyI GAGTC 2 cut(s) 540, 647
MmeI TCCRAC 4 cut(s) 207, 548, 910, 1277
MnlI CCTC 9 cut(s) 7, 67, 94, 373, 482, 564, 829, 857, 1020
MseI TTAA 3 cut(s) 506, 515, 1212
MslI CAYNNNNRTG 2 cut(s) 1241, 1264
MspI CCGG 1 cut(s) 1224
MspR9I CCNGG 1 cut(s) 956
MunI CAATTG 3 cut(s) 285, 1062, 1155
Mva1269I GAATGC 1 cut(s) 1067
MvaI CCWGG 1 cut(s) 956
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 2 cut(s) 383, 1337
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 6, 77, 103, 208, 1134
NlaIII CATG 3 cut(s) 61, 89, 1263
NlaIV GGNNCC 6 cut(s) 51, 247, 292, 322, 1147, 1312
NmuCI GTSAC 2 cut(s) 607, 1054
OliI CACNNNNGTG 1 cut(s) 1241
PagI TCATGA 1 cut(s) 57
PctI GAATGC 1 cut(s) 1067
PfeI GAWTC 1 cut(s) 867
PflMI CCANNNNNTGG 1 cut(s) 961
PkrI GCNGC 4 cut(s) 95, 736, 1330, 1411
PleI GAGTC 2 cut(s) 539, 646
PpsI GAGTC 2 cut(s) 539, 646
PsiI TTATAA 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 954
PspGI CCWGG 1 cut(s) 954
PspN4I GGNNCC 6 cut(s) 51, 247, 292, 322, 1147, 1312
PspPI GGNCC 2 cut(s) 290, 321
PsuI RGATCY 2 cut(s) 77, 208
RsaI GTAC 7 cut(s) 67, 233, 450, 1113, 1173, 1312, 1371
RsaNI GTAC 7 cut(s) 66, 232, 449, 1112, 1172, 1311, 1370
RseI CAYNNNNRTG 2 cut(s) 1241, 1264
SaqAI TTAA 3 cut(s) 506, 515, 1212
SatI GCNGC 4 cut(s) 94, 735, 1329, 1410
Sau3AI GATC 5 cut(s) 6, 77, 103, 208, 1134
Sau96I GGNCC 2 cut(s) 290, 321
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 2 cut(s) 540, 647
ScrFI CCNGG 1 cut(s) 956
SduI GDGCHC 3 cut(s) 128, 394, 1304
SfaNI GCATC 4 cut(s) 152, 703, 989, 1037
SfcI CTRYAG 2 cut(s) 692, 1347
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 1241, 1264
SmlI CTYRAG 2 cut(s) 325, 1083
SmoI CTYRAG 2 cut(s) 325, 1083
SsiI CCGC 1 cut(s) 705
SspI AATATT 1 cut(s) 1210
SspMI CTAG 2 cut(s) 791, 1241
StyD4I CCNGG 1 cut(s) 954
StyI CCWWGG 1 cut(s) 1175
TaaI ACNGT 2 cut(s) 770, 928
TaiI ACGT 1 cut(s) 723
TaqI TCGA 2 cut(s) 313, 487
TaqII GACCGA 1 cut(s) 608
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 867
Tru1I TTAA 3 cut(s) 506, 515, 1212
Tru9I TTAA 3 cut(s) 506, 515, 1212
TscAI CASTG 4 cut(s) 228, 243, 898, 931
TseFI GTSAC 2 cut(s) 607, 1054
TseI GCWGC 4 cut(s) 93, 734, 1328, 1409
Tsp45I GTSAC 2 cut(s) 607, 1054
TspDTI ATGAA 7 cut(s) 74, 168, 168, 429, 448, 619, 1306
TspGWI ACGGA 2 cut(s) 218, 588
TspRI CASTG 4 cut(s) 228, 243, 898, 931
Van91I CCANNNNNTGG 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 155
XspI CTAG 2 cut(s) 791, 1241
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.