Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Reverse (-)

54151214 .. 54152381

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGATCAATGAGGATGTGGAGAATGTTGTGCAGGAGAACATAAGGGAGCCACTCATGAGGGGTACTGGAGAGGGATCTGGTCATGGAAGCAGCAAAGAGGATCAATGGATGGTTTACCTGAGCACATTTGTCGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTGGGTTATTCATCGCCTACTCAGTCTGCCATCACGGAAGATCTCAATTTATCAGTGTCAGAGTACTCAGTGTTTGGCTCCATTCTCACATTTGGTGCAATGATAGGTGCTATCACAATTGGACCCATCACCGATTTTGTTGGTCGAAAAGGGGCCTTGAGAATGTCCTGTGCTTTCTGTGTTGCAGGTTGGCTTGCTATTTACTTTGCTGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGATATGGAATGGGAGCTTTTTCATATGTTGTACCTGTTTTCATTTCTGAAATTGCACCCAAAAATCTTCGAGGAAGACTAACTGCTTTAAATCAGGTAAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

174

Amino Acids

18.6

Weight (kDa)

4.69

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	59 - 171	1.5e-13	Major Facilitator Superfamily
Sugar_tr	PF00083	65 - 172	1.1e-24	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	85, 111
AcsI	RAATTY	1 cut(s)	155
AfaI	GTAC	3 cut(s)	67, 233, 450
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
Alw21I	GWGCWC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	85, 111
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	290, 321
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	3 cut(s)	106, 206, 302
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BfuAI	ACCTGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	2 cut(s)	94, 145
BlsI	GCNGC	2 cut(s)	95, 146
BmcAI	AGTACT	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 321
BmiI	GGNNCC	4 cut(s)	51, 247, 292, 322
BmsI	GCATC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	499
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	2 cut(s)	122, 378
BpuEI	CTTGAG	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	73, 421
Bse3DI	GCAATG	1 cut(s)	273
BseGI	GGATG	3 cut(s)	22, 117, 167
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	4 cut(s)	113, 203, 249, 369
BseNI	ACTGG	2 cut(s)	73, 421
BseXI	GCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	323
Bsp1286I	GDGCHC	2 cut(s)	128, 394
Bsp143I	GATC	4 cut(s)	6, 77, 103, 208
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	4 cut(s)	114, 202, 248, 370
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	51, 247, 292, 322
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	85, 111
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	73, 421
BssMI	GATC	4 cut(s)	6, 77, 103, 208
Bst4CI	ACNGT	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	4 cut(s)	122, 189, 235, 378
BstF5I	GGATG	3 cut(s)	22, 117, 167
BstKTI	GATC	4 cut(s)	9, 80, 106, 211
BstMBI	GATC	4 cut(s)	6, 77, 103, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	499
BstX2I	RGATCY	2 cut(s)	77, 208
BstYI	RGATCY	2 cut(s)	77, 208
BsuRI	GGCC	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	22, 117, 167
BtsIMutI	CAGTG	2 cut(s)	228, 243
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	363
CciI	TCATGA	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	290, 321
Csp6I	GTAC	3 cut(s)	66, 232, 449
CviAII	CATG	2 cut(s)	58, 86
CviJI	RGCY	7 cut(s)	52, 147, 246, 323, 361, 392, 434
CviKI_1	RGCY	7 cut(s)	52, 147, 246, 323, 361, 392, 434
CviQI	GTAC	3 cut(s)	66, 232, 449
DdeI	CTNAG	4 cut(s)	122, 189, 235, 378
DpnI	GATC	4 cut(s)	8, 79, 105, 210
DpnII	GATC	4 cut(s)	6, 77, 103, 208
DraI	TTTAAA	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	2 cut(s)	61, 89
FaiI	YATR	7 cut(s)	44, 59, 87, 153, 423, 442, 444
FatI	CATG	2 cut(s)	57, 85
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	94, 145
FokI	GGATG	3 cut(s)	29, 124, 174
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	94, 145
GluI	GCNGC	2 cut(s)	94, 145
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	61, 89
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	118, 517
Hpy188I	TCNGA	3 cut(s)	161, 229, 466
Hpy188III	TCNNGA	2 cut(s)	58, 395
Hpy8I	GTNNAC	2 cut(s)	118, 517
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4V	TGCA	4 cut(s)	34, 266, 353, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	4 cut(s)	122, 189, 235, 378
Hsp92II	CATG	2 cut(s)	61, 89
Kzo9I	GATC	4 cut(s)	6, 77, 103, 208
LmnI	GCTCC	3 cut(s)	49, 251, 431
LpnPI	CCDG	9 cut(s)	20, 54, 66, 134, 339, 349, 402, 465, 497
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	152
MalI	GATC	4 cut(s)	8, 79, 105, 210
MboI	GATC	4 cut(s)	6, 77, 103, 208
MboII	GAAGA	3 cut(s)	218, 476, 504
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	2 cut(s)	77, 208
MhlI	GDGCHC	2 cut(s)	128, 394
MluCI	AATT	4 cut(s)	155, 214, 285, 468
MnlI	CCTC	6 cut(s)	7, 54, 67, 94, 373, 482
MseI	TTAA	1 cut(s)	506
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	4 cut(s)	6, 77, 103, 208
NlaIII	CATG	2 cut(s)	61, 89
NlaIV	GGNNCC	4 cut(s)	51, 247, 292, 322
PagI	TCATGA	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	95, 146
PspN4I	GGNNCC	4 cut(s)	51, 247, 292, 322
PspPI	GGNCC	2 cut(s)	290, 321
PsuI	RGATCY	2 cut(s)	77, 208
RsaI	GTAC	3 cut(s)	67, 233, 450
RsaNI	GTAC	3 cut(s)	66, 232, 449
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	2 cut(s)	94, 145
Sau3AI	GATC	4 cut(s)	6, 77, 103, 208
Sau96I	GGNCC	2 cut(s)	290, 321
ScaI	AGTACT	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	128, 394
SetI	ASST	6 cut(s)	123, 277, 358, 436, 454, 516
SfaNI	GCATC	1 cut(s)	152
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	155, 214, 285, 468
SsiI	CCGC	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	521
TaqI	TCGA	2 cut(s)	313, 487
TasI	AATT	4 cut(s)	155, 214, 285, 468
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	2 cut(s)	228, 243
TseI	GCWGC	1 cut(s)	93
TspDTI	ATGAA	4 cut(s)	168, 168, 429, 448
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	228, 243
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.