MD11G1293200.v1.1
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
41260335 .. 41263632
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1293200.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGGCTGATGGAATAAGAGAACCACTCATGGCTGATGAAGGCAGAAGAGGGGATCAATGGATGGTTTATCTCAGCACACTTGTTGCTGTCTGTGGCTCTTACGAATTTGGATGCTGTGTCGGTTATTCGTCACCTACCCAGTCTGCAATTACGGAAGATCTTAATTTAACATTAGCAGAGTATTCAGTGGTTGGCTCCATTTTGACAATTGGTGCAATGGTAGGAGCCATAACTATCGGGCCTATTGCGGATTTTCTTGGCCGCAAAGGGGCCTTGAGAGTGTCTTCTGCTTTCTGTTTTGCAGGTTGGCTTGCTATTTACTTCTCTGAGGGGGTTTTGTCTCTGGACATTGGGAGAATGGCAAGTGGATACGGAATGGGAGCCTTTTCGTACTTGGTACCTGTTTTCATAGCTGAAATCGCACCCAAAAATCTTCGAGGAAGACTAACTGCTGTAAATCAGTTAATGATCTGTGTTGGAAGCTCTGTTTCCTTCATAATCGGGGTTGTAGTAAGTTGGAGGGCATTAGCATTAATCGGAATTGTGCCGTGTGCTGTGACTATTTTCGGTCTTTTTTTCATTCCCGAGTCTCCACGATGGTTGGCAAAGACAGGACGCCATAAAGATTTCGAGGCTGCACTGCAGAAACTTCGTGGCAAAGACGCTGACATCTCTCACGAAGCAGCAGAAATCCAGGATTACATAGCAACTCTTGAACGACTCCCTAAAGCGAAGTTGCTGGATTTGTTTCAAACGAGATACTTGCGCTCAGTCGTTATTGGCATCGGGCTGATGGTCTGCCAACAATTAGGGGGAATTAACGGGGTTGGTTTCTATGTCAGTGATATTTTTGAGCAAGCAGGATTCTCATCCAGCGTTGGGACTATATCCTTTGCTGTTCTTCAGGTTGTGGTTACTGGTATTGGTGCATCCGTGATGGATAAAGCCGGAAGAAGGCCTCTAATTGTGCTCTCTGCATCAGGCTTGGTACTCGGATCTCTCCTGACTGCCATTTCATTCTTTCTCAAGGTTCATGACTTGGCACACAAGGCATCTCCCATACTTGCTGTAACCGGCATTCTGGTCTATATAGGATCCTTTGCGATAGGAATGGGAGCAGTTCCTTGGGTCATTATGTCTGAGATATTCCCGATAAACATTAAAGGGCAGGCCGGAAGCGTAGCAACACTGGTGAACTGGTTCGGCGCATGGTTGTGTTCCTACACTTTCAACTATCTTATGAGTTGGAGCTCCTACGGCACCTTCGTTTTGTATGCCGCAATCAACGCACTGGCCATAGCTTTCGTGGTTTCGATGGTACCTGAAACGAAAGGGAAAACCCTGGAACAGATTCAAGGAGCCATTAACAAGTAG

Protein Analysis

458

Amino Acids

48.81

Weight (kDa)

8.04

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 43 - 403 1.4e-28 Major Facilitator Superfamily
Sugar_tr PF00083 59 - 452 1.9e-92 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
Acc65I GGTACC 2 cut(s) 397, 1318
AccB1I GGYRCC 3 cut(s) 397, 1259, 1318
AciI CCGC 3 cut(s) 248, 262, 1278
AclWI GGATC 4 cut(s) 60, 1003, 1089, 1102
AcoI YGGCCR 2 cut(s) 259, 1293
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 887
AcyI GRCGYC 1 cut(s) 616
AfaI GTAC 4 cut(s) 392, 399, 990, 1320
AfiI CCNNNNNNNGG 3 cut(s) 268, 879, 954
AgsI TTSAA 4 cut(s) 716, 752, 1231, 1355
AjnI CCWGG 2 cut(s) 693, 1341
AluBI AGCT 4 cut(s) 413, 483, 1251, 1301
AluI AGCT 4 cut(s) 413, 483, 1251, 1301
Alw21I GWGCWC 2 cut(s) 972, 1253
Alw26I GTCTC 2 cut(s) 345, 594
AlwI GGATC 4 cut(s) 60, 1003, 1089, 1102
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 6 cut(s) 239, 259, 270, 956, 1170, 1293
ApeKI GCWGC 2 cut(s) 635, 683
ApoI RAATTY 1 cut(s) 104
AseI ATTAAT 1 cut(s) 533
Asp700I GAANNNNTTC 2 cut(s) 1199, 1350
Asp718I GGTACC 2 cut(s) 397, 1318
AspLEI GCGC 2 cut(s) 768, 1208
AspS9I GGNCC 2 cut(s) 239, 270
AsuHPI GGTGA 2 cut(s) 123, 1204
AvaI CYCGRG 1 cut(s) 584
BalI TGGCCA 1 cut(s) 1295
BamHI GGATCC 1 cut(s) 1094
BanI GGYRCC 3 cut(s) 397, 1259, 1318
BanII GRGCYC 1 cut(s) 1253
BbsI GAAGAC 2 cut(s) 276, 448
Bbv12I GWGCWC 2 cut(s) 972, 1253
BbvI GCAGC 2 cut(s) 622, 695
BccI CCATC 6 cut(s) 2, 55, 591, 787, 931, 1309
BceAI ACGGC 2 cut(s) 532, 1273
BcgI CGANNNNNNTGC 4 cut(s) 632, 666, 745, 779
BciT130I CCWGG 2 cut(s) 695, 1343
BciVI GTATCC 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 345, 594
BfmI CTRYAG 1 cut(s) 641
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 362
BglII AGATCT 1 cut(s) 157
BisI GCNGC 4 cut(s) 262, 636, 684, 1278
BlsI GCNGC 4 cut(s) 263, 637, 685, 1279
Bme1390I CCNGG 2 cut(s) 695, 1343
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 239, 270
BmiI GGNNCC 9 cut(s) 196, 226, 271, 382, 399, 1096, 1261, 1320, 1360
BmrFI CCNGG 2 cut(s) 695, 1343
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 5 cut(s) 101, 792, 938, 986, 1061
BmuI ACTGGG 1 cut(s) 133
BpiI GAAGAC 2 cut(s) 276, 448
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpuEI CTTGAG 2 cut(s) 295, 1010
BsaBI GATNNNNATC 1 cut(s) 868
BsaHI GRCGYC 1 cut(s) 616
BsaJI CCNNGG 2 cut(s) 1124, 1341
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 879, 954
Bse118I RCCGGY 1 cut(s) 1073
Bse1I ACTGG 5 cut(s) 139, 922, 1194, 1202, 1296
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 868
BseBI CCWGG 2 cut(s) 695, 1343
BseDI CCNNGG 2 cut(s) 1124, 1341
BseGI GGATG 4 cut(s) 66, 116, 869, 929
BseJI GATNNNNATC 1 cut(s) 868
BseLI CCNNNNNNNGG 3 cut(s) 268, 879, 954
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 4 cut(s) 85, 318, 783, 1131
BseNI ACTGG 5 cut(s) 139, 922, 1194, 1202, 1296
BseXI GCAGC 2 cut(s) 622, 695
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 6 cut(s) 241, 261, 272, 958, 1172, 1295
BshNI GGYRCC 3 cut(s) 397, 1259, 1318
BsiHKAI GWGCWC 2 cut(s) 972, 1253
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 3 cut(s) 948, 1074, 1173
BslFI GGGAC 1 cut(s) 895
BslI CCNNNNNNNGG 3 cut(s) 268, 879, 954
BsmAI GTCTC 2 cut(s) 345, 594
BsmFI GGGAC 1 cut(s) 895
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 6 cut(s) 241, 261, 272, 958, 1172, 1295
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 972, 1253
Bsp143I GATC 5 cut(s) 52, 157, 468, 995, 1094
BspACI CCGC 3 cut(s) 248, 262, 1278
BspANI GGCC 6 cut(s) 241, 261, 272, 958, 1172, 1295
BspCNI CTCAG 4 cut(s) 84, 319, 782, 1132
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 9 cut(s) 196, 226, 271, 382, 399, 1096, 1261, 1320, 1360
BspMAI CTGCAG 1 cut(s) 645
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 4 cut(s) 60, 1003, 1089, 1102
BspT107I GGYRCC 3 cut(s) 397, 1259, 1318
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 1073
BsrI ACTGG 5 cut(s) 139, 922, 1194, 1202, 1296
BssAI RCCGGY 1 cut(s) 1073
BssECI CCNNGG 2 cut(s) 1124, 1341
BssMI GATC 5 cut(s) 52, 157, 468, 995, 1094
BssNI GRCGYC 1 cut(s) 616
BssT1I CCWWGG 1 cut(s) 1124
Bst2UI CCWGG 2 cut(s) 695, 1343
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 616
BstC8I GCNNGC 3 cut(s) 312, 858, 1170
BstDEI CTNAG 4 cut(s) 71, 327, 769, 1140
BstF5I GGATG 4 cut(s) 66, 116, 869, 929
BstHHI GCGC 2 cut(s) 768, 1208
BstKTI GATC 5 cut(s) 55, 160, 471, 998, 1097
BstMAI GTCTC 2 cut(s) 345, 594
BstMBI GATC 5 cut(s) 52, 157, 468, 995, 1094
BstMWI GCNNNNNNNGC 4 cut(s) 419, 1049, 1257, 1286
BstNI CCWGG 2 cut(s) 695, 1343
BstSCI CCNGG 2 cut(s) 693, 1341
BstSFI CTRYAG 1 cut(s) 641
BstV1I GCAGC 2 cut(s) 622, 695
BstV2I GAAGAC 2 cut(s) 276, 448
BstX2I RGATCY 3 cut(s) 157, 995, 1094
BstYI RGATCY 3 cut(s) 157, 995, 1094
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 6 cut(s) 241, 261, 272, 958, 1172, 1295
BtsCI GGATG 4 cut(s) 66, 116, 869, 929
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 5 cut(s) 192, 638, 847, 1187, 1289
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 312, 858, 1170
CciI TCATGA 1 cut(s) 1033
CfoI GCGC 2 cut(s) 768, 1208
Cfr10I RCCGGY 1 cut(s) 1073
Cfr13I GGNCC 2 cut(s) 239, 270
CseI GACGC 2 cut(s) 624, 671
Csp6I GTAC 4 cut(s) 391, 398, 989, 1319
CspCI CAANNNNNGTGG 2 cut(s) 582, 617
CviAII CATG 3 cut(s) 28, 1034, 1209
CviQI GTAC 4 cut(s) 391, 398, 989, 1319
DdeI CTNAG 4 cut(s) 71, 327, 769, 1140
DpnI GATC 5 cut(s) 54, 159, 470, 997, 1096
DpnII GATC 5 cut(s) 52, 157, 468, 995, 1094
EaeI YGGCCR 2 cut(s) 259, 1293
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 1251
Eco130I CCWWGG 1 cut(s) 1124
Eco147I AGGCCT 1 cut(s) 958
Eco24I GRGCYC 1 cut(s) 1253
Eco53kI GAGCTC 1 cut(s) 1251
Eco57I CTGAAG 1 cut(s) 887
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 1251
EcoO109I RGGNCCY 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 693, 1341
EcoT14I CCWWGG 1 cut(s) 1124
EcoT38I GRGCYC 1 cut(s) 1253
ErhI CCWWGG 1 cut(s) 1124
FaeI CATG 3 cut(s) 31, 1037, 1212
FaqI GGGAC 1 cut(s) 895
FatI CATG 3 cut(s) 27, 1033, 1208
Fnu4HI GCNGC 4 cut(s) 262, 636, 684, 1278
FokI GGATG 4 cut(s) 73, 123, 856, 916
FriOI GRGCYC 1 cut(s) 1253
Fsp4HI GCNGC 4 cut(s) 262, 636, 684, 1278
GlaI GCGC 2 cut(s) 767, 1207
GluI GCNGC 4 cut(s) 262, 636, 684, 1278
HaeIII GGCC 6 cut(s) 241, 261, 272, 958, 1172, 1295
HapII CCGG 3 cut(s) 948, 1074, 1173
HgaI GACGC 2 cut(s) 624, 671
HhaI GCGC 2 cut(s) 768, 1208
Hin1I GRCGYC 1 cut(s) 616
Hin1II CATG 3 cut(s) 31, 1037, 1212
Hin6I GCGC 2 cut(s) 766, 1206
HinP1I GCGC 2 cut(s) 766, 1206
HinfI GANTC 4 cut(s) 587, 720, 864, 1351
HpaII CCGG 3 cut(s) 948, 1074, 1173
HphI GGTGA 2 cut(s) 123, 1204
Hpy166II GTNNAC 1 cut(s) 1195
Hpy188I TCNGA 4 cut(s) 328, 539, 995, 1141
Hpy188III TCNNGA 7 cut(s) 344, 584, 677, 713, 1003, 1034, 1150
Hpy8I GTNNAC 1 cut(s) 1195
HpyAV CCTTC 4 cut(s) 32, 502, 948, 1273
HpyCH4V TGCA 7 cut(s) 146, 215, 302, 638, 643, 929, 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 1049, 1257, 1286
HpyF3I CTNAG 4 cut(s) 71, 327, 769, 1140
Hsp92I GRCGYC 1 cut(s) 616
Hsp92II CATG 3 cut(s) 31, 1037, 1212
HspAI GCGC 2 cut(s) 766, 1206
KpnI GGTACC 2 cut(s) 401, 1322
Kzo9I GATC 5 cut(s) 52, 157, 468, 995, 1094
LmnI GCTCC 7 cut(s) 200, 224, 380, 1115, 1248, 1256, 1358
Lsp1109I GCAGC 2 cut(s) 622, 695
LweI GCATC 5 cut(s) 101, 792, 938, 986, 1061
MaeIII GTNAC 4 cut(s) 129, 556, 913, 1069
MalI GATC 5 cut(s) 54, 159, 470, 997, 1096
MboI GATC 5 cut(s) 52, 157, 468, 995, 1094
MboII GAAGA 7 cut(s) 57, 167, 276, 425, 453, 893, 963
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 3 cut(s) 157, 995, 1094
MhlI GDGCHC 2 cut(s) 972, 1253
MlsI TGGCCA 1 cut(s) 1295
MluCI AATT 8 cut(s) 104, 147, 163, 207, 540, 806, 816, 963
MluNI TGGCCA 1 cut(s) 1295
MlyI GAGTC 2 cut(s) 596, 714
MmeI TCCRAC 3 cut(s) 457, 497, 1226
MnlI CCTC 6 cut(s) 41, 322, 431, 513, 625, 969
Mox20I TGGCCA 1 cut(s) 1295
MroXI GAANNNNTTC 2 cut(s) 1199, 1350
MscI TGGCCA 1 cut(s) 1295
MseI TTAA 7 cut(s) 162, 167, 464, 533, 819, 1161, 1365
MslI CAYNNNNRTG 1 cut(s) 1213
Msp20I TGGCCA 1 cut(s) 1295
MspI CCGG 3 cut(s) 948, 1074, 1173
MspR9I CCNGG 2 cut(s) 695, 1343
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 1077
MvaI CCWGG 2 cut(s) 695, 1343
MwoI GCNNNNNNNGC 4 cut(s) 419, 1049, 1257, 1286
NdeII GATC 5 cut(s) 52, 157, 468, 995, 1094
NlaIII CATG 3 cut(s) 31, 1037, 1212
NlaIV GGNNCC 9 cut(s) 196, 226, 271, 382, 399, 1096, 1261, 1320, 1360
NmuCI GTSAC 2 cut(s) 129, 556
PagI TCATGA 1 cut(s) 1033
PceI AGGCCT 1 cut(s) 958
PcsI WCGNNNNNNNCGW 1 cut(s) 1263
PctI GAATGC 1 cut(s) 1077
PdmI GAANNNNTTC 2 cut(s) 1199, 1350
PfeI GAWTC 2 cut(s) 864, 1351
PfoI TCCNGGA 1 cut(s) 693
PkrI GCNGC 4 cut(s) 263, 637, 685, 1279
PleI GAGTC 2 cut(s) 595, 714
PpsI GAGTC 2 cut(s) 595, 714
PshBI ATTAAT 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 1253
Psp6I CCWGG 2 cut(s) 693, 1341
PspGI CCWGG 2 cut(s) 693, 1341
PspN4I GGNNCC 9 cut(s) 196, 226, 271, 382, 399, 1096, 1261, 1320, 1360
PspPI GGNCC 2 cut(s) 239, 270
PstI CTGCAG 1 cut(s) 645
PsuI RGATCY 3 cut(s) 157, 995, 1094
RsaI GTAC 4 cut(s) 392, 399, 990, 1320
RsaNI GTAC 4 cut(s) 391, 398, 989, 1319
RseI CAYNNNNRTG 1 cut(s) 1213
SacI GAGCTC 1 cut(s) 1253
SaqAI TTAA 7 cut(s) 162, 167, 464, 533, 819, 1161, 1365
SatI GCNGC 4 cut(s) 262, 636, 684, 1278
Sau3AI GATC 5 cut(s) 52, 157, 468, 995, 1094
Sau96I GGNCC 2 cut(s) 239, 270
SchI GAGTC 2 cut(s) 596, 714
ScrFI CCNGG 2 cut(s) 695, 1343
SduI GDGCHC 2 cut(s) 972, 1253
SfaNI GCATC 5 cut(s) 101, 792, 938, 986, 1061
SfcI CTRYAG 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 1213
SmlI CTYRAG 2 cut(s) 274, 1025
SmoI CTYRAG 2 cut(s) 274, 1025
Sse9I AATT 8 cut(s) 104, 147, 163, 207, 540, 806, 816, 963
SseBI AGGCCT 1 cut(s) 958
SsiI CCGC 3 cut(s) 248, 262, 1278
SstI GAGCTC 1 cut(s) 1253
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 2 cut(s) 693, 1341
StyI CCWWGG 1 cut(s) 1124
TaqI TCGA 3 cut(s) 436, 630, 1313
TaqII GACCGA 1 cut(s) 557
TasI AATT 8 cut(s) 104, 147, 163, 207, 540, 806, 816, 963
TauI GCSGC 2 cut(s) 264, 1280
TfiI GAWTC 2 cut(s) 864, 1351
Tru1I TTAA 7 cut(s) 162, 167, 464, 533, 819, 1161, 1365
Tru9I TTAA 7 cut(s) 162, 167, 464, 533, 819, 1161, 1365
TscAI CASTG 5 cut(s) 192, 645, 847, 1194, 1296
TseFI GTSAC 2 cut(s) 129, 556
TseI GCWGC 2 cut(s) 635, 683
Tsp45I GTSAC 2 cut(s) 129, 556
TspDTI ATGAA 6 cut(s) 51, 397, 484, 568, 1005, 1022
TspGWI ACGGA 3 cut(s) 167, 387, 922
TspRI CASTG 5 cut(s) 192, 645, 847, 1194, 1296
VspI ATTAAT 1 cut(s) 533
XapI RAATTY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 1303
XmnI GAANNNNTTC 2 cut(s) 1199, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.