MD04G1211000.v1.1
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
29554141 .. 29555092
952 bp
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UTR
Exon/CDS
Intron
MD04G1211000.v1.1.491

Sequence Viewer

Length: 402 bp
ATGATTTATTTGCAGGTGGGATATTCCTCACCATCTCGGTCTGGGGTCATGAATGATTTGGGCCTCACTGTAGCTCAGTACTCAGTTTTTGGTTCAATATTGACAACCGGAGCAATGATAGGAGCAATAGTGAGTGGGAGAATAGCAGATTACTTTGGTAGAAGAGGAGCAATGGCGTCTTCCGAGATATTCTGCATTTTGGGATGGCTTGCCATAGCTTTTTCTAAGGTTGCTTGGTGGGCAGAACTTGGAAGACTGTTGGTCGGATGTGGAATGGGGATTCTTTCTTATGTGGTAACTTTTTTGAGGATTTCAATTGCATGCAGTTCGTATAAGATTTTTATTAAAGTTTCGCCTAAAAGTGTGTTTATTTCGATAACAAACAGGTGCCTATATACATAG

Protein Analysis

134

Amino Acids

14.4

Weight (kDa)

9.55

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 3 - 96 1.3e-07 Major Facilitator Superfamily
Sugar_tr PF00083 23 - 102 1.8e-10 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 4
Acc36I ACCTGC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 2 cut(s) 96, 315
AhdI GACNNNNNGTC 1 cut(s) 260
AluBI AGCT 2 cut(s) 74, 218
AluI AGCT 2 cut(s) 74, 218
AoxI GGCC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 21
BanI GGYRCC 1 cut(s) 387
BbsI GAAGAC 2 cut(s) 171, 259
BccI CCATC 2 cut(s) 40, 198
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 4
BmcAI AGTACT 1 cut(s) 80
BmeRI GACNNNNNGTC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 389
BpiI GAAGAC 2 cut(s) 171, 259
BsaHI GRCGYC 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse3DI GCAATG 2 cut(s) 120, 177
BseGI GGATG 2 cut(s) 209, 272
BseMI GCAATG 2 cut(s) 120, 177
BseMII CTCAG 2 cut(s) 89, 96
BseRI GAGGAG 1 cut(s) 180
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 108
BsnI GGCC 1 cut(s) 63
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 88, 95
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 389
BspMI ACCTGC 1 cut(s) 4
BspT107I GGYRCC 1 cut(s) 387
BsrDI GCAATG 2 cut(s) 120, 177
BssNI GRCGYC 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 70, 258
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 210, 322
BstDEI CTNAG 3 cut(s) 75, 82, 225
BstF5I GGATG 2 cut(s) 209, 272
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 69
BstV2I GAAGAC 2 cut(s) 171, 259
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 2 cut(s) 209, 272
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 210, 322
CciI TCATGA 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 49, 321
CviJI RGCY 4 cut(s) 63, 74, 208, 218
CviKI_1 RGCY 4 cut(s) 63, 74, 208, 218
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 3 cut(s) 75, 82, 225
DriI GACNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 157
FaeI CATG 2 cut(s) 52, 324
FaiI YATR 8 cut(s) 50, 215, 291, 322, 333, 394, 396, 400
FatI CATG 2 cut(s) 48, 320
FokI GGATG 2 cut(s) 216, 279
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 2 cut(s) 52, 324
HinfI GANTC 1 cut(s) 280
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 184, 266
Hpy188III TCNNGA 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 70, 258
HpyCH4V TGCA 4 cut(s) 13, 195, 320, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 75, 82, 225
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 52, 324
LmnI GCTCC 3 cut(s) 110, 122, 167
LpnPI CCDG 3 cut(s) 27, 121, 370
MaeIII GTNAC 1 cut(s) 295
MboII GAAGA 3 cut(s) 171, 174, 264
MfeI CAATTG 1 cut(s) 315
MluCI AATT 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 4 cut(s) 37, 74, 158, 300
MseI TTAA 1 cut(s) 345
MspI CCGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 52, 324
NlaIV GGNNCC 1 cut(s) 389
NspI RCATGY 1 cut(s) 324
PaeI GCATGC 1 cut(s) 324
PagI TCATGA 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 1 cut(s) 61
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 61
ScaI AGTACT 1 cut(s) 80
SetI ASST 5 cut(s) 18, 76, 220, 231, 389
SfcI CTRYAG 1 cut(s) 69
SphI GCATGC 1 cut(s) 324
Sse9I AATT 1 cut(s) 315
SspI AATATT 1 cut(s) 99
TaaI ACNGT 2 cut(s) 70, 258
TaqI TCGA 1 cut(s) 374
TaqII GACCGA 1 cut(s) 27
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 73
XceI RCATGY 1 cut(s) 324
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.