Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000502.1

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

24324 .. 27585

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000502.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atggcgatcaatgaggatgtggagaatgttgtgcaggagaacataagggagccactcatgaagggtactggagagggatctggtcatggaagcagcaaagaggatcaatggatggtttacctgagcacatttgtcgcagtttgcggctcttatgaattcggatgctgtgtgggttattcatcgcctactcagtctgccatcactgaagatctcaatttatcagtgtcggagtactcagtgtttggctccattctcacatttggtgcaatgataggtgctatcacaattggacccatcaccgatgttgttggtcgaaaaggggccttgagaatgtcctgtgctttctgtgttgcaggttggcttgctatttactttgctgagggtgcttgggctcttgacattgggagattggcaactggatatggaatgggagctttttcatatgttgtacctgttttcatttctgaaattgcacccaaaaatcttcgaggaagactaactgctttaaatcagttaatgattgtttctggagtctctgtttccttcataattgggattgtagtaagttggagggctttagcactaataggactaattccgtgtgctgtgacccttttcggtctctttttcattcccgagtctccaagatggttggcaaagacaggacgccacagagattttgaagttgcactacagaaacttcgtgggaaagatgctgacgtatctcttgaagcagcagaaatcaaggaatatatagcaactattgacagcctccctaaagccaaattgctagatttgtttcaaaggagatacttgccctcagtcttgatagcagttggcttgatggtctttcaacaactgggaggaatcaatggcgtttgtttctatgtcagcgatatttttgagcaagcaggattttcttccactgttggaactataacctatgctattctccaggttgtggtaactggcattggtgcatccataatggataaagctggacgaaagcctctgattttgacttctgcatcaggattgctacttggctgcgtagtgactgcaattgcattctttctcacggctcaagaattggctctcaatgttgctcccgtacttgctgtaactggcatactgatattccctataaatattaaagggcaggccggaagcttagccacgctagtgaactggtttggtgcatggttgtgttcctacactttcaacttccttatgagttggagcacctatggtaccttcattctgtatgcagcaatcaatgctttagctatagtttttgtgattttctttgtacctgaaacaaaggggaaaactctggaacaaatccaagcagccataagcaaagagagaagtgaagaaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

460

Amino Acids

49.51

Weight (kDa)

5.65

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
Acc65I	GGTACC	1 cut(s)	1250
AccB1I	GGYRCC	1 cut(s)	1250
AccB7I	CCANNNNNTGG	1 cut(s)	961
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	85, 111
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	667
AfaI	GTAC	6 cut(s)	67, 233, 450, 1113, 1252, 1311
AfiI	CCNNNNNNNGG	1 cut(s)	961
AgsI	TTSAA	5 cut(s)	683, 731, 803, 854, 1222
AjnI	CCWGG	1 cut(s)	954
AleI	CACNNNNGTG	1 cut(s)	1181
AluBI	AGCT	4 cut(s)	434, 998, 1170, 1286
AluI	AGCT	4 cut(s)	434, 998, 1170, 1286
Alw21I	GWGCWC	2 cut(s)	128, 1244
Alw26I	GTCTC	3 cut(s)	538, 626, 645
AlwI	GGATC	2 cut(s)	85, 111
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	321, 1161
ApeKI	GCWGC	5 cut(s)	93, 734, 1047, 1268, 1349
ApoI	RAATTY	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	1250
AspS9I	GGNCC	2 cut(s)	290, 321
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	1250
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	675, 707
BbsI	GAAGAC	1 cut(s)	499
Bbv12I	GWGCWC	2 cut(s)	128, 1244
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	105, 746, 1034, 1280, 1361
BccI	CCATC	5 cut(s)	106, 206, 302, 642, 838
BceAI	ACGGC	1 cut(s)	1095
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	956
BcoDI	GTCTC	3 cut(s)	538, 626, 645
BfaI	CTAG	2 cut(s)	791, 1181
BfmI	CTRYAG	2 cut(s)	692, 1287
BfuAI	ACCTGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	6 cut(s)	94, 145, 735, 1048, 1269, 1350
BlpI	GCTNAGC	1 cut(s)	1171
BlsI	GCNGC	6 cut(s)	95, 146, 736, 1049, 1270, 1351
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	956
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	290, 321
BmiI	GGNNCC	5 cut(s)	51, 247, 292, 322, 1252
BmrFI	CCNGG	1 cut(s)	956
BmrI	ACTGGG	1 cut(s)	869
BmsI	GCATC	4 cut(s)	152, 703, 989, 1037
BmuI	ACTGGG	1 cut(s)	869
BpiI	GAAGAC	1 cut(s)	499
BpmI	CTGGAG	3 cut(s)	90, 549, 938
Bpu10I	CCTNAGC	2 cut(s)	122, 378
Bpu1102I	GCTNAGC	1 cut(s)	1171
BpuEI	CTTGAG	2 cut(s)	346, 1068
BsaHI	GRCGYC	1 cut(s)	667
BsaI	GGTCTC	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	961
Bse1I	ACTGG	6 cut(s)	73, 421, 864, 973, 1129, 1193
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	956
BseGI	GGATG	4 cut(s)	22, 117, 167, 980
BseLI	CCNNNNNNNGG	1 cut(s)	961
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	5 cut(s)	113, 203, 249, 369, 834
BseNI	ACTGG	6 cut(s)	73, 421, 864, 973, 1129, 1193
BseXI	GCAGC	5 cut(s)	105, 746, 1034, 1280, 1361
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	323, 1163
BshNI	GGYRCC	1 cut(s)	1250
BsiHKAI	GWGCWC	2 cut(s)	128, 1244
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	1164
BslI	CCNNNNNNNGG	1 cut(s)	961
BsmAI	GTCTC	3 cut(s)	538, 626, 645
BsmI	GAATGC	1 cut(s)	1067
BsnI	GGCC	2 cut(s)	323, 1163
Bso31I	GGTCTC	1 cut(s)	626
BsoBI	CYCGRG	1 cut(s)	635
Bsp1286I	GDGCHC	3 cut(s)	128, 394, 1244
Bsp143I	GATC	4 cut(s)	6, 77, 103, 208
Bsp1720I	GCTNAGC	1 cut(s)	1171
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	323, 1163
BspCNI	CTCAG	5 cut(s)	114, 202, 248, 370, 833
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	5 cut(s)	51, 247, 292, 322, 1252
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	85, 111
BspT107I	GGYRCC	1 cut(s)	1250
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	6 cut(s)	73, 421, 864, 973, 1129, 1193
BssMI	GATC	4 cut(s)	6, 77, 103, 208
BssNI	GRCGYC	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	1 cut(s)	928
BstACI	GRCGYC	1 cut(s)	667
BstAPI	GCANNNNNTGC	1 cut(s)	1277
BstC8I	GCNNGC	3 cut(s)	363, 909, 1161
BstDEI	CTNAG	6 cut(s)	122, 189, 235, 378, 820, 1171
BstF5I	GGATG	4 cut(s)	22, 117, 167, 980
BstKTI	GATC	4 cut(s)	9, 80, 106, 211
BstMAI	GTCTC	3 cut(s)	538, 626, 645
BstMBI	GATC	4 cut(s)	6, 77, 103, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 1277
BstNI	CCWGG	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	954
BstSFI	CTRYAG	2 cut(s)	692, 1287
BstV1I	GCAGC	5 cut(s)	105, 746, 1034, 1280, 1361
BstV2I	GAAGAC	1 cut(s)	499
BstX2I	RGATCY	2 cut(s)	77, 208
BstYI	RGATCY	2 cut(s)	77, 208
BsuRI	GGCC	2 cut(s)	323, 1163
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	22, 117, 167, 980
BtsIMutI	CAGTG	4 cut(s)	201, 228, 243, 924
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	363, 909, 1161
CciI	TCATGA	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	290, 321
CseI	GACGC	1 cut(s)	675
Csp6I	GTAC	6 cut(s)	66, 232, 449, 1112, 1251, 1310
CviAII	CATG	3 cut(s)	58, 86, 1200
CviQI	GTAC	6 cut(s)	66, 232, 449, 1112, 1251, 1310
DdeI	CTNAG	6 cut(s)	122, 189, 235, 378, 820, 1171
DpnI	GATC	4 cut(s)	8, 79, 105, 210
DpnII	GATC	4 cut(s)	6, 77, 103, 208
DraI	TTTAAA	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	954
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	3 cut(s)	61, 89, 1203
FatI	CATG	3 cut(s)	57, 85, 1199
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	6 cut(s)	94, 145, 735, 1048, 1269, 1350
FokI	GGATG	4 cut(s)	29, 124, 174, 967
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	6 cut(s)	94, 145, 735, 1048, 1269, 1350
FspBI	CTAG	2 cut(s)	791, 1181
GluI	GCNGC	6 cut(s)	94, 145, 735, 1048, 1269, 1350
GsuI	CTGGAG	3 cut(s)	90, 549, 938
HaeIII	GGCC	2 cut(s)	323, 1163
HapII	CCGG	1 cut(s)	1164
HgaI	GACGC	1 cut(s)	675
Hin1I	GRCGYC	1 cut(s)	667
Hin1II	CATG	3 cut(s)	61, 89, 1203
HindIII	AAGCTT	1 cut(s)	1168
HinfI	GANTC	3 cut(s)	531, 638, 867
HpaII	CCGG	1 cut(s)	1164
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	118, 1186
Hpy188I	TCNGA	4 cut(s)	161, 229, 466, 1014
Hpy188III	TCNNGA	9 cut(s)	58, 395, 528, 635, 728, 826, 1032, 1085, 1334
Hpy8I	GTNNAC	2 cut(s)	118, 1186
HpyAV	CCTTC	3 cut(s)	55, 553, 1264
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4IV	ACGT	1 cut(s)	720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 1277
HpyF3I	CTNAG	6 cut(s)	122, 189, 235, 378, 820, 1171
HpySE526I	ACGT	1 cut(s)	720
Hsp92I	GRCGYC	1 cut(s)	667
Hsp92II	CATG	3 cut(s)	61, 89, 1203
KpnI	GGTACC	1 cut(s)	1254
Kzo9I	GATC	4 cut(s)	6, 77, 103, 208
LmnI	GCTCC	5 cut(s)	49, 251, 431, 1111, 1239
Lsp1109I	GCAGC	5 cut(s)	105, 746, 1034, 1280, 1361
LweI	GCATC	4 cut(s)	152, 703, 989, 1037
MaeI	CTAG	2 cut(s)	791, 1181
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	4 cut(s)	607, 964, 1054, 1120
MalI	GATC	4 cut(s)	8, 79, 105, 210
MboI	GATC	4 cut(s)	6, 77, 103, 208
MboII	GAAGA	4 cut(s)	218, 476, 504, 912
MfeI	CAATTG	2 cut(s)	285, 1062
MflI	RGATCY	2 cut(s)	77, 208
MhlI	GDGCHC	3 cut(s)	128, 394, 1244
MluCI	AATT	9 cut(s)	155, 214, 285, 468, 549, 594, 785, 1062, 1088
MlyI	GAGTC	2 cut(s)	540, 647
MmeI	TCCRAC	4 cut(s)	207, 548, 910, 1217
MseI	TTAA	3 cut(s)	506, 515, 1152
MslI	CAYNNNNRTG	2 cut(s)	1181, 1204
MspI	CCGG	1 cut(s)	1164
MspR9I	CCNGG	1 cut(s)	956
MunI	CAATTG	2 cut(s)	285, 1062
Mva1269I	GAATGC	1 cut(s)	1067
MvaI	CCWGG	1 cut(s)	956
MwoI	GCNNNNNNNGC	2 cut(s)	383, 1277
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	4 cut(s)	6, 77, 103, 208
NlaIII	CATG	3 cut(s)	61, 89, 1203
NlaIV	GGNNCC	5 cut(s)	51, 247, 292, 322, 1252
NmuCI	GTSAC	2 cut(s)	607, 1054
OliI	CACNNNNGTG	1 cut(s)	1181
PagI	TCATGA	1 cut(s)	57
PctI	GAATGC	1 cut(s)	1067
PfeI	GAWTC	1 cut(s)	867
PflMI	CCANNNNNTGG	1 cut(s)	961
PkrI	GCNGC	6 cut(s)	95, 146, 736, 1049, 1270, 1351
PleI	GAGTC	2 cut(s)	539, 646
PpsI	GAGTC	2 cut(s)	539, 646
Psp6I	CCWGG	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	954
PspN4I	GGNNCC	5 cut(s)	51, 247, 292, 322, 1252
PspPI	GGNCC	2 cut(s)	290, 321
PsuI	RGATCY	2 cut(s)	77, 208
RsaI	GTAC	6 cut(s)	67, 233, 450, 1113, 1252, 1311
RsaNI	GTAC	6 cut(s)	66, 232, 449, 1112, 1251, 1310
RseI	CAYNNNNRTG	2 cut(s)	1181, 1204
SaqAI	TTAA	3 cut(s)	506, 515, 1152
SatI	GCNGC	6 cut(s)	94, 145, 735, 1048, 1269, 1350
Sau3AI	GATC	4 cut(s)	6, 77, 103, 208
Sau96I	GGNCC	2 cut(s)	290, 321
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	2 cut(s)	540, 647
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	3 cut(s)	128, 394, 1244
SfaNI	GCATC	4 cut(s)	152, 703, 989, 1037
SfcI	CTRYAG	2 cut(s)	692, 1287
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	2 cut(s)	1181, 1204
SmlI	CTYRAG	2 cut(s)	325, 1083
SmoI	CTYRAG	2 cut(s)	325, 1083
Sse9I	AATT	9 cut(s)	155, 214, 285, 468, 549, 594, 785, 1062, 1088
SsiI	CCGC	1 cut(s)	144
SspI	AATATT	1 cut(s)	1150
SspMI	CTAG	2 cut(s)	791, 1181
StyD4I	CCNGG	1 cut(s)	954
TaaI	ACNGT	1 cut(s)	928
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	2 cut(s)	313, 487
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	9 cut(s)	155, 214, 285, 468, 549, 594, 785, 1062, 1088
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	867
Tru1I	TTAA	3 cut(s)	506, 515, 1152
Tru9I	TTAA	3 cut(s)	506, 515, 1152
TscAI	CASTG	4 cut(s)	208, 228, 243, 931
TseFI	GTSAC	2 cut(s)	607, 1054
TseI	GCWGC	5 cut(s)	93, 734, 1047, 1268, 1349
Tsp45I	GTSAC	2 cut(s)	607, 1054
TspDTI	ATGAA	8 cut(s)	74, 168, 168, 429, 448, 535, 619, 1246
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	4 cut(s)	208, 228, 243, 931
Van91I	CCANNNNNTGG	1 cut(s)	961
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	2 cut(s)	791, 1181
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.