Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

41351144 .. 41354638

Gene Structure 3495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG352500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCCACCATACAAAGATGAGGCTGCTGAGGAAAGATTAGCCATTTTTTGGCATAACAAGCTTGAGGAAAAGCAGGCGTTGAGATTTTCCAGTGTTGTCTGTGTTGCAGGTTGGCTTGCCATTTACTTTTCCAAGGGAGCTTTGCTTCTGGACATTGGGAGAATGCCAAAAGGATATGGAATGGGAGCCTTTTCATACGTGGTACCTATATTTGTTGCTGAAATTGCACCCAAACATCTTCGAGGAAGTCTAACTGCTTTGAATCAGTTGATGATCGTTGCTGGAGTGTCAGTGTCCTTCGTAATTGGGGTAGTAGTAAGTTGGAGGACTTTAGCATTAATTGGACTTATTCCCTGTGCTGTGACCATTTTTGGTCTGTTTTTTATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGAAACCAAAAAGATTTTGAAGATGCACTGCAGAAACTTCGTGGCAGAGATGCCGACATATCTCAAGAAGCTGAAGAAATCCAGCCACAATTACAGAAACAAAGTGTCGCCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

178

Amino Acids

19.59

Weight (kDa)

7.76

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	15 - 173	1.4e-31	Sugar (and other) transporter
MFS_1	PF07690	23 - 144	6.8e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	262, 437
AluBI	AGCT	4 cut(s)	61, 140, 488, 533
AluI	AGCT	4 cut(s)	61, 140, 488, 533
Alw26I	GTCTC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	338
Asp718I	GGTACC	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	396
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BcoDI	GTCTC	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	187, 204
BmsI	GCATC	2 cut(s)	430, 457
BpmI	CTGGAG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	83, 465
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	187, 204
BspMAI	CTGCAG	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	75, 117
BstDEI	CTNAG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 224
BstSFI	CTRYAG	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	3 cut(s)	97, 297, 443
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	75, 117
Csp6I	GTAC	1 cut(s)	203
CviJI	RGCY	9 cut(s)	23, 41, 61, 115, 140, 188, 488, 502, 533
CviKI_1	RGCY	9 cut(s)	23, 41, 61, 115, 140, 188, 488, 502, 533
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaiI	YATR	6 cut(s)	10, 54, 177, 196, 209, 476
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	303
HapII	CCGG	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	262, 392
HpaII	CCGG	1 cut(s)	528
Hpy188III	TCNNGA	3 cut(s)	149, 389, 482
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	107, 227, 443, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 224
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	198
KpnI	GGTACC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	3 cut(s)	137, 185, 530
LpnPI	CCDG	8 cut(s)	59, 93, 103, 134, 267, 367, 402, 512
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	430, 457
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	3 cut(s)	230, 449, 503
MluCI	AATT	4 cut(s)	222, 303, 339, 506
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	13, 22, 58, 236, 318
MseI	TTAA	2 cut(s)	338, 535
MspI	CCGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	58, 224
NdeII	GATC	1 cut(s)	273
NlaIV	GGNNCC	2 cut(s)	187, 204
NmuCI	GTSAC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	187, 204
PstI	CTGCAG	1 cut(s)	450
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	338, 535
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	401
SetI	ASST	7 cut(s)	63, 112, 142, 201, 208, 490, 535
SfaNI	GCATC	2 cut(s)	430, 457
SfcI	CTRYAG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	62, 480
SmoI	CTYRAG	2 cut(s)	62, 480
Sse9I	AATT	4 cut(s)	222, 303, 339, 506
StyI	CCWWGG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	241
TasI	AATT	4 cut(s)	222, 303, 339, 506
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	338, 535
Tru9I	TTAA	2 cut(s)	338, 535
TscAI	CASTG	3 cut(s)	97, 297, 450
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	3 cut(s)	97, 297, 450
Van91I	CCANNNNNTGG	1 cut(s)	48
VspI	ATTAAT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.