Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

14982813 .. 14986559

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCGATCAATGAGGATGTGGAGAATGTTGTACAGGAGAACATTAGGGAGCCACTCATGAGGGGTACTGGAGAGGGATCTGGTCATGGAAGCAGCAAAGAGGATCAATGGATGGTTTACCTGAGCACATTTGTCGCAGTTTGCGGCTCTTATGAATTCGGATGCTGTGTGGGTTATTCATCGCCTACTCAGTCTGCCATCACAGAAGATCTCAATTTATCAGTGTCAGAGGGTGCTTGGGCTCTTGACATTGGGAGATTGGCAACTGGATATGGAATGGGAGCTTTTTCATATGTTGTGAGTTTTCGCCATCCTCTTTTGATGAAATATTGGATGGATGACAAGGTACCTGTGTTCATTTGTGAAATTGCACCCAAAAATCTTCGAGGAAGACTAACTGCTTTAAATCAGTTAATGATTGTTTCTGGAGTCTCTGTTTCCTTCATAATTGGGATTGTAGTAAGTTGGAGGGCTTTAGCACTAATAGGACTAATTCCGTGTGCTGTGACCCTTTTCGGTCTCTTTTTCATTCCTGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCACACAGATTTTGAAGTTGCACTGCAGAAACTTCGCGGGAAAGATGCTGACATATCTCTTGAAGCAGCAGAAATCAAGATAGCAGTTGGCTTGATGGTCTTTCAACAACTGGGAGGAATCAATGGTGTTTGTTTCTATGTCAGCGATATTTTTGAGCAAGCAGGATTTTCTTCCACCGTTGGAACTATAACCTATGCTATTCTCCAGGTTGTGGTAACTGGCATTGGTGCATCCATAATGGATAAAGCTGGACGAAAGCCTCTGATTTTGAGTTCTGCATCAGGATTGCTACTTGGCTGTGTGGTGACTGCAATTGCATTCTTTCTCACGGCTCAAGAATTGGCTCTCAATGTTGCTCCCGTACTTGCTGTAACTGGCATACTGATCTTTATAGGAGCCTTTTCAATTGGAATGGGAGCAGTACCTTGGATTATTATGTCTGAGATATTCCCTATAAATATTAAAGGGCAGGCCGGAAGCTTAGCCACGCTAGTAAACTGGTTTGGTGCATGGTTGTGTTCCTACACTTTCAACTTCCTTATGAGTTGGAGCACCTATGGTACCTTCATTCTGTATGCAGCAATCAATGCTTTAGCTATAGTTTTTGTGATTTTCTTTGTACCTGAAACAAAGGGGAAAACTCTGGAACAAATCCAAGCAGCCATAAGCAAAGAGAGAAGTGAAGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

419

Amino Acids

45.23

Weight (kDa)

5.16

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	116 - 215	2.1e-18	Sugar (and other) transporter
MFS_1	PF07690	118 - 359	9.1e-12	Major Facilitator Superfamily
Sugar_tr	PF00083	215 - 409	1.3e-45	Sugar (and other) transporter
MFS_1	PF07690	249 - 405	1.5e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	346, 1127
AccB1I	GGYRCC	2 cut(s)	346, 1127
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccII	CGCG	1 cut(s)	603
AciI	CCGC	2 cut(s)	144, 603
AclWI	GGATC	2 cut(s)	85, 111
AcsI	RAATTY	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	565
AfaI	GTAC	7 cut(s)	33, 67, 348, 930, 990, 1129, 1188
AfiI	CCNNNNNNNGG	1 cut(s)	778
AgsI	TTSAA	5 cut(s)	581, 629, 671, 972, 1099
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	4 cut(s)	284, 815, 1047, 1163
AluI	AGCT	4 cut(s)	284, 815, 1047, 1163
Alw21I	GWGCWC	2 cut(s)	128, 1121
Alw26I	GTCTC	3 cut(s)	436, 524, 543
AlwI	GGATC	2 cut(s)	85, 111
AoxI	GGCC	1 cut(s)	1038
ApeKI	GCWGC	4 cut(s)	93, 632, 1145, 1226
ApoI	RAATTY	1 cut(s)	155
Asp718I	GGTACC	2 cut(s)	346, 1127
AsuHPI	GGTGA	1 cut(s)	883
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BanI	GGYRCC	2 cut(s)	346, 1127
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	2 cut(s)	128, 1121
BbvI	GCAGC	4 cut(s)	105, 644, 1157, 1238
BccI	CCATC	6 cut(s)	106, 206, 318, 328, 540, 655
BceAI	ACGGC	1 cut(s)	912
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 581, 615
BciT130I	CCWGG	1 cut(s)	773
BcoDI	GTCTC	3 cut(s)	436, 524, 543
BfaI	CTAG	1 cut(s)	1058
BfmI	CTRYAG	2 cut(s)	590, 1164
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	5 cut(s)	94, 145, 633, 1146, 1227
BlpI	GCTNAGC	1 cut(s)	1048
BlsI	GCNGC	5 cut(s)	95, 146, 634, 1147, 1228
Bme1390I	CCNGG	1 cut(s)	773
BmiI	GGNNCC	4 cut(s)	51, 348, 964, 1129
BmrFI	CCNGG	1 cut(s)	773
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	4 cut(s)	152, 601, 806, 854
BmuI	ACTGGG	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	3 cut(s)	90, 447, 755
Bpu10I	CCTNAGC	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	1048
BpuEI	CTTGAG	1 cut(s)	885
BsaHI	GRCGYC	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	992
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse1I	ACTGG	6 cut(s)	73, 271, 681, 790, 946, 1070
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	1 cut(s)	992
BseGI	GGATG	7 cut(s)	22, 117, 167, 310, 339, 343, 797
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMII	CTCAG	4 cut(s)	113, 203, 525, 999
BseNI	ACTGG	6 cut(s)	73, 271, 681, 790, 946, 1070
BseXI	GCAGC	4 cut(s)	105, 644, 1157, 1238
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	1040
BshNI	GGYRCC	2 cut(s)	346, 1127
BsiHKAI	GWGCWC	2 cut(s)	128, 1121
BsiSI	CCGG	1 cut(s)	1041
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmAI	GTCTC	3 cut(s)	436, 524, 543
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	1 cut(s)	1040
Bso31I	GGTCTC	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	128, 244, 1121
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	6, 77, 103, 208, 951
Bsp1720I	GCTNAGC	1 cut(s)	1048
BspACI	CCGC	2 cut(s)	144, 603
BspANI	GGCC	1 cut(s)	1040
BspCNI	CTCAG	4 cut(s)	114, 202, 526, 1000
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	51, 348, 964, 1129
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	2 cut(s)	85, 111
BspT107I	GGYRCC	2 cut(s)	346, 1127
BspTNI	GGTCTC	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	6 cut(s)	73, 271, 681, 790, 946, 1070
BssECI	CCNNGG	1 cut(s)	992
BssMI	GATC	5 cut(s)	6, 77, 103, 208, 951
BssNI	GRCGYC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	992
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	1 cut(s)	745
BstACI	GRCGYC	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	1154
BstAUI	TGTACA	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	726, 1038
BstDEI	CTNAG	5 cut(s)	122, 189, 534, 1008, 1048
BstF5I	GGATG	7 cut(s)	22, 117, 167, 310, 339, 343, 797
BstFNI	CGCG	1 cut(s)	603
BstKTI	GATC	5 cut(s)	9, 80, 106, 211, 954
BstMAI	GTCTC	3 cut(s)	436, 524, 543
BstMBI	GATC	5 cut(s)	6, 77, 103, 208, 951
BstMWI	GCNNNNNNNGC	1 cut(s)	1154
BstNI	CCWGG	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	771
BstSFI	CTRYAG	2 cut(s)	590, 1164
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	4 cut(s)	105, 644, 1157, 1238
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	77, 208
BstYI	RGATCY	2 cut(s)	77, 208
BsuRI	GGCC	1 cut(s)	1040
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	7 cut(s)	22, 117, 167, 310, 339, 343, 797
BtsI	GCAGTG	1 cut(s)	587
BtsIMutI	CAGTG	2 cut(s)	228, 587
Cac8I	GCNNGC	2 cut(s)	726, 1038
CciI	TCATGA	1 cut(s)	57
CseI	GACGC	1 cut(s)	573
Csp6I	GTAC	7 cut(s)	32, 66, 347, 929, 989, 1128, 1187
CviAII	CATG	3 cut(s)	58, 86, 1077
CviQI	GTAC	7 cut(s)	32, 66, 347, 929, 989, 1128, 1187
DdeI	CTNAG	5 cut(s)	122, 189, 534, 1008, 1048
DpnI	GATC	5 cut(s)	8, 79, 105, 210, 953
DpnII	GATC	5 cut(s)	6, 77, 103, 208, 951
DraI	TTTAAA	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	992
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	771
EcoT14I	CCWWGG	1 cut(s)	992
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	992
FaeI	CATG	3 cut(s)	61, 89, 1080
FatI	CATG	3 cut(s)	57, 85, 1076
FauI	CCCGC	1 cut(s)	596
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	94, 145, 633, 1146, 1227
FokI	GGATG	7 cut(s)	29, 124, 174, 297, 346, 350, 784
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	5 cut(s)	94, 145, 633, 1146, 1227
FspBI	CTAG	1 cut(s)	1058
GluI	GCNGC	5 cut(s)	94, 145, 633, 1146, 1227
GsuI	CTGGAG	3 cut(s)	90, 447, 755
HaeIII	GGCC	1 cut(s)	1040
HapII	CCGG	1 cut(s)	1041
HgaI	GACGC	1 cut(s)	573
Hin1I	GRCGYC	1 cut(s)	565
Hin1II	CATG	3 cut(s)	61, 89, 1080
HindIII	AAGCTT	1 cut(s)	1045
HinfI	GANTC	3 cut(s)	429, 536, 684
HpaII	CCGG	1 cut(s)	1041
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	2 cut(s)	118, 1063
Hpy188I	TCNGA	4 cut(s)	161, 229, 831, 1009
Hpy188III	TCNNGA	9 cut(s)	58, 245, 426, 533, 626, 643, 849, 902, 1211
Hpy8I	GTNNAC	2 cut(s)	118, 1063
HpyAV	CCTTC	2 cut(s)	451, 1141
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4V	TGCA	9 cut(s)	371, 587, 592, 797, 845, 878, 884, 1076, 1145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1154
HpyF3I	CTNAG	5 cut(s)	122, 189, 534, 1008, 1048
Hsp92I	GRCGYC	1 cut(s)	565
Hsp92II	CATG	3 cut(s)	61, 89, 1080
KpnI	GGTACC	2 cut(s)	350, 1131
Kzo9I	GATC	5 cut(s)	6, 77, 103, 208, 951
LmnI	GCTCC	6 cut(s)	49, 281, 928, 962, 983, 1116
Lsp1109I	GCAGC	4 cut(s)	105, 644, 1157, 1238
LweI	GCATC	4 cut(s)	152, 601, 806, 854
MaeI	CTAG	1 cut(s)	1058
MaeIII	GTNAC	4 cut(s)	505, 781, 871, 937
MalI	GATC	5 cut(s)	8, 79, 105, 210, 953
MboI	GATC	5 cut(s)	6, 77, 103, 208, 951
MboII	GAAGA	4 cut(s)	218, 374, 402, 729
MfeI	CAATTG	2 cut(s)	879, 972
MflI	RGATCY	2 cut(s)	77, 208
MhlI	GDGCHC	3 cut(s)	128, 244, 1121
MluCI	AATT	8 cut(s)	155, 214, 366, 447, 492, 879, 905, 972
MlyI	GAGTC	2 cut(s)	438, 545
MmeI	TCCRAC	3 cut(s)	446, 727, 1094
MseI	TTAA	4 cut(s)	404, 413, 1029, 1258
MslI	CAYNNNNRTG	1 cut(s)	1081
MspI	CCGG	1 cut(s)	1041
MspR9I	CCNGG	1 cut(s)	773
MunI	CAATTG	2 cut(s)	879, 972
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	773
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	1154
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	5 cut(s)	6, 77, 103, 208, 951
NlaIII	CATG	3 cut(s)	61, 89, 1080
NlaIV	GGNNCC	4 cut(s)	51, 348, 964, 1129
NmuCI	GTSAC	2 cut(s)	505, 871
PagI	TCATGA	1 cut(s)	57
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	1 cut(s)	684
PflMI	CCANNNNNTGG	1 cut(s)	778
PkrI	GCNGC	5 cut(s)	95, 146, 634, 1147, 1228
PleI	GAGTC	2 cut(s)	437, 544
PpsI	GAGTC	2 cut(s)	437, 544
Psp6I	CCWGG	1 cut(s)	771
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	4 cut(s)	51, 348, 964, 1129
PstI	CTGCAG	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	77, 208
RsaI	GTAC	7 cut(s)	33, 67, 348, 930, 990, 1129, 1188
RsaNI	GTAC	7 cut(s)	32, 66, 347, 929, 989, 1128, 1187
RseI	CAYNNNNRTG	1 cut(s)	1081
SaqAI	TTAA	4 cut(s)	404, 413, 1029, 1258
SatI	GCNGC	5 cut(s)	94, 145, 633, 1146, 1227
Sau3AI	GATC	5 cut(s)	6, 77, 103, 208, 951
SchI	GAGTC	2 cut(s)	438, 545
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	3 cut(s)	128, 244, 1121
SfaNI	GCATC	4 cut(s)	152, 601, 806, 854
SfcI	CTRYAG	2 cut(s)	590, 1164
SmiMI	CAYNNNNRTG	1 cut(s)	1081
SmlI	CTYRAG	1 cut(s)	900
SmoI	CTYRAG	1 cut(s)	900
Sse9I	AATT	8 cut(s)	155, 214, 366, 447, 492, 879, 905, 972
SsiI	CCGC	2 cut(s)	144, 603
SspI	AATATT	2 cut(s)	329, 1027
SspMI	CTAG	1 cut(s)	1058
StyD4I	CCNGG	1 cut(s)	771
StyI	CCWWGG	1 cut(s)	992
TaaI	ACNGT	1 cut(s)	745
TaqI	TCGA	1 cut(s)	385
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	8 cut(s)	155, 214, 366, 447, 492, 879, 905, 972
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	4 cut(s)	404, 413, 1029, 1258
Tru9I	TTAA	4 cut(s)	404, 413, 1029, 1258
TscAI	CASTG	2 cut(s)	228, 594
TseFI	GTSAC	2 cut(s)	505, 871
TseI	GCWGC	4 cut(s)	93, 632, 1145, 1226
Tsp45I	GTSAC	2 cut(s)	505, 871
TspDTI	ATGAA	8 cut(s)	168, 168, 279, 338, 346, 433, 517, 1123
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	2 cut(s)	228, 594
Van91I	CCANNNNNTGG	1 cut(s)	778
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.