Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240599.1

Orthogroup ID

OG0000774

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 498

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

tactcagtgtttggctccattctcacatttggtgcaatgataggtgctatcactattggacccatcaccgattttgttggtcgtaaaggggccatgagactgtcctgtgctttctctgttgtaggttggcttgctatttactttgctgagggtgcttgggctcttgacattgggagattggcaactggatatggaatgggagccttttcatatgttgtgagttttcgccatcctctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

79

Amino Acids

8.4

Weight (kDa)

9.04

Isoelectric Point (pI)

7.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48020 AT2G48020 AT2G48020 AT2G48020
fragaria_vesca	FvH4_2g24260 FvH4_2g24260 FvH4_2g24280 FvH4_2g24280 FvH4_2g24280 FvH4_2g24290
malus_domestica	MD03G1272500.v1.1 MD04G1211000.v1.1 MD11G1293100.v1.1 MD11G1293200.v1.1 MD11G1293300.v1.1 MD11G1293400.v1.1 MD12G1225800.v1.1
prunus_persica	Prupe.8G248500_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248600_v2.0.a1 Prupe.8G248700_v2.0.a1
pyrus_communis	pycom03g21700 pycom11g25940 pycom11g25950 pycom11g25960
rosa_chinensis	RchiOBHm_Chr6g0292071 RchiOBHm_Chr6g0292101 RchiOBHm_Chr6g0292121 RchiOBHm_Chr6g0292141
rosa_laevigata	RLG00000012058 RLG00000012060 RLG00000012061
rosa_multiflora	Rmu_co8240599.1_g000001 Rmu_co8452453.1_g000001 Rmu_sc0000303.1_g000031 Rmu_sc0000502.1_g000008 Rmu_sc0000502.1_g000011
rosa_roxburghii	Rroxscaffold_7G00175410 Rroxscaffold_7G00175430 Rroxscaffold_7G00175460
rosa_rugosa	Rorug06G0223300 Rorug06G0223400 Rorug06G0223400 Rorug06G0223500 Rorug06G0223600 Rorug06G0223700 Rorug06G0223800
rosa_samantha	Rh2AG603100 Rh3BG352500 Rh6AG336800 Rh6AG336900 Rh6AG337100 Rh6BG344100 Rh6BG344200 Rh6BG344300 Rh6CG350500 Rh6CG350800 Rh6CG351100 Rh6DG337000 Rh6DG337300 Rh7BG160000 Rh7BG460400
rosa_wichuraiana	Rw6G029310 Rw6G029320 Rw6G029330 Rw6G029340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw26I	GTCTC	1 cut(s)	91
AoxI	GGCC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	59, 90
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	71, 237
BcoDI	GTCTC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 90
BmiI	GGNNCC	4 cut(s)	16, 61, 91, 202
Bpu10I	CCTNAGC	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	18, 138
BseNI	ACTGG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	17, 139
BspLI	GGNNCC	4 cut(s)	16, 61, 91, 202
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	4, 147
BstF5I	GGATG	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	59, 90
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	5 cut(s)	15, 92, 130, 161, 203
CviKI_1	RGCY	5 cut(s)	15, 92, 130, 161, 203
DdeI	CTNAG	2 cut(s)	4, 147
Eco24I	GRGCYC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	97
FaiI	YATR	4 cut(s)	95, 192, 211, 213
FatI	CATG	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	211
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	4, 147
Hsp92II	CATG	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	20, 200
LpnPI	CCDG	2 cut(s)	118, 171
MhlI	GDGCHC	1 cut(s)	163
MnlI	CCTC	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeI	CATATG	1 cut(s)	211
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	4 cut(s)	16, 61, 91, 202
PspN4I	GGNNCC	4 cut(s)	16, 61, 91, 202
PspPI	GGNCC	2 cut(s)	59, 90
Sau96I	GGNCC	2 cut(s)	59, 90
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	2 cut(s)	46, 127
SgeI	CNNG	6 cut(s)	106, 117, 143, 168, 176, 198
SinI	GGWCC	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	102
TscAI	CASTG	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.