Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Forward (+)

3691163 .. 3693506

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG054100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGCTGTTCTTCTTCTTCTTCTACCTCTATCTTGGATTAGTACCAATTAGCTTTCCTAGTTGTGGCTTCTTCCTTGTAAGTGGCCAAGAAACCCCACGTACAGAGTTGGGTTTTTTTTCATCATGTCCATTGAACATTGAGGCTCTCAGAGAATTAATCTTCGAAGGTGCTCCGAAAGTTCTTGATGTCCAGACTGAGTGCCAGTACATCCTCGAAGGAATCCGATTGCTTCGATCGGATTATCTCCGATCCACCGGGTACTTTTCCCCACCTTCCTATACCATAATCTCATGCTGGGATGCATACCAAGCTTTGATCAGCGAATCGATACCGGATTTAAAAATTGGATCCACTTGTGGGTTTAAGCCCGCTCTGCTGTCAGAGACTTGTATGAATATCACAACTCGGTCTGAATTTGAAAGTTTGATTCCCAAATCAGAATTGCAGGTAATTGAGGGTGCTTGTAGCCAGTCTCTAGATGATTATTCCCCTTGTTTTTCGTGTAGGCGCATTTTGTCGAGTCTGAATATGTCTCATTTTGGTAGAGGGTATGATGGGAATGTAGCAGATTGTGATGGATATCCATATATTTATGCTGCAGCTTTTGGTAATAGGAAGGGACCAATAAATTTGAGTACAGCCAAGTGTTTGTTCTCACTAAACTTCAATTCTTTTGATAGAAAGACTAAAAACAAGCACAGGGTTTTGCTTTGGGCTGTGTTGATAGGAAGTGTGTGTGGATTCACTGTGGCATTTTTGGTGGTTTGGGTTCTTTGGGGGAGGCATAGGAGAAGGAATAAGAAGATGAAGGATCAAAGTGAGACGACGGGGTTTGTTTCCGCCATAGAAATTATAGGTGAGAATACCAGCTTGGCTAGGTTCCCATTTGAGGAACTTAAAAAGGCCACCGAGAATTTCGCCAGGGAGAACATAATTGGGATTGGAGGCTATGGAAATGTGTACAAGGGTACATTGGCAGATGGGTCTGAAGTAGCTTTGAAAAGGTTCAAGAACTTGTCTGCTGCCGGAGATGTAATGTTTGCACATGAGTTGGAGGTTATTGCTAGCATTCGGCATGTGAATCTTGTCGCGGTGAGAGGCTATTGTACTATAAAAGTGCCTAGGCAAGGCCACCAAAGGATAATGGTGTGTGACTTGGTGAACAATGGAAGTCTCTACGAACATCTTTTCGATCCAAGGATGAAGAAGAAACAGCTCAGCTGGACAATTCGTCAGAAGATTGCACTTGGAATGGCTCGCGGATTGGCTTATTTGCACTATGGAGTGCAGCCTGCTGTAATCCACAGAGATGTCAAAGCAAGCAATGTACTTCTAGACGAAGAATTCGAGCCAAAACTGGCTGATTTTGGTTTAGCAAAGTTCACACCAGAAGGACAGACACATATGCACACAAGGGTGGCTGGGACATTTGGGTATGTTGCACCGGAGTATGCTTTGTATGGGCAGTTATCCGAAAGAAGCGATGTCTACAGTTTTGGGGTAGTGCTTCTTGAACTTTTGAGTGGAAAGAGAGCAGTTATTGAAGCTAGTGGTACCACAACTTTGCTTTTGGCAGATTGGGCTTGGTCACAAGTGAGGAAAGGCAGACCATTAGATGTTATAGACGAAAGCATTCAGAACTTAAGCTCTAAGGAAGTAATGGAAAACTATGTAATGGTTGCAGTTCTTTCTGCTCATCCGGAATCACATGCGAGGCCAACAATGGACCAAATTGTCAAGATATTGGAAAGGGATTTTCAAGTTCCCTCAAACATGGACGCCCCTATTCATAAAATCGATCAGTCGGCAAGCTCTAGTGGTTCGAGTTACATTTCAAGCAATACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

616

Amino Acids

68.77

Weight (kDa)

7.53

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	40 - 191	1.2e-29	SPARK
Pkinase	PF00069	307 - 579	3.4e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	309 - 581	1.7e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1733
Acc36I	ACCTGC	1 cut(s)	436
Acc65I	GGTACC	1 cut(s)	1553
AccB1I	GGYRCC	1 cut(s)	1553
AccBSI	CCGCTC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	1488
AccII	CGCG	2 cut(s)	1091, 1260
AccIII	TCCGGA	1 cut(s)	1699
AciI	CCGC	4 cut(s)	369, 840, 1091, 1260
AclWI	GGATC	5 cut(s)	243, 342, 355, 819, 1187
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	4 cut(s)	413, 628, 913, 1343
AcuI	CTGAAG	1 cut(s)	1008
AcyI	GRCGYC	1 cut(s)	1779
AfiI	CCNNNNNNNGG	4 cut(s)	62, 357, 889, 1127
AflII	CTTAAG	1 cut(s)	1642
AgsI	TTSAA	9 cut(s)	133, 419, 667, 1000, 1009, 1514, 1544, 1760, 1836
AhdI	GACNNNNNGTC	1 cut(s)	1230
AjnI	CCWGG	1 cut(s)	920
AjuI	GAANNNNNNNTTGG	4 cut(s)	635, 667, 854, 886
AleI	CACNNNNGTG	1 cut(s)	1415
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	5 cut(s)	377, 477, 537, 815, 1178
AlwI	GGATC	5 cut(s)	243, 342, 355, 819, 1187
Aor13HI	TCCGGA	1 cut(s)	1699
AoxI	GGCC	4 cut(s)	82, 903, 1129, 1715
ApeKI	GCWGC	4 cut(s)	596, 599, 1022, 1288
ApoI	RAATTY	4 cut(s)	413, 628, 913, 1343
ArsI	GACNNNNNNTTYG	2 cut(s)	1328, 1360
AseI	ATTAAT	1 cut(s)	155
Asp700I	GAANNNNTTC	2 cut(s)	1004, 1632
Asp718I	GGTACC	1 cut(s)	1553
AspA2I	CCTAGG	1 cut(s)	1121
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	620, 1726
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	3 cut(s)	869, 1105, 1171
AsuII	TTCGAA	1 cut(s)	162
AsuNHI	GCTAGC	1 cut(s)	1064
AvaII	GGWCC	2 cut(s)	620, 1726
AvrII	CCTAGG	1 cut(s)	1121
BalI	TGGCCA	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	1553
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	583, 611, 1009, 1300
BccI	CCATC	3 cut(s)	548, 569, 974
BciT130I	CCWGG	1 cut(s)	922
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	5 cut(s)	377, 477, 537, 815, 1178
BfaI	CTAG	8 cut(s)	57, 476, 876, 1065, 1122, 1334, 1548, 1815
BfmI	CTRYAG	2 cut(s)	597, 1489
BfrI	CTTAAG	1 cut(s)	1642
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	4 cut(s)	597, 600, 1023, 1289
BlnI	CCTAGG	1 cut(s)	1121
BlpI	GCTNAGC	1 cut(s)	1217
BlsI	GCNGC	4 cut(s)	598, 601, 1024, 1290
Bme1390I	CCNGG	2 cut(s)	256, 922
Bme18I	GGWCC	2 cut(s)	620, 1726
BmeRI	GACNNNNNGTC	1 cut(s)	1230
BmgT120I	GGNCC	2 cut(s)	620, 1726
BmiI	GGNNCC	4 cut(s)	349, 621, 881, 1555
BmrFI	CCNGG	2 cut(s)	256, 922
BmsI	GCATC	1 cut(s)	289
BmtI	GCTAGC	1 cut(s)	1068
Bpu1102I	GCTNAGC	1 cut(s)	1217
Bpu14I	TTCGAA	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	256
Bsa29I	ATCGAT	2 cut(s)	326, 1797
BsaAI	YACGTR	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	579
BsaHI	GRCGYC	1 cut(s)	1779
BsaJI	CCNNGG	3 cut(s)	921, 1121, 1196
BsaWI	WCCGGW	3 cut(s)	331, 1444, 1699
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 357, 889, 1127
Bse1I	ACTGG	4 cut(s)	202, 469, 1362, 1849
Bse3DI	GCAATG	1 cut(s)	1330
Bse8I	GATNNNNATC	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	1699
BseBI	CCWGG	1 cut(s)	922
BseCI	ATCGAT	2 cut(s)	326, 1797
BseDI	CCNNGG	3 cut(s)	921, 1121, 1196
BseGI	GGATG	4 cut(s)	207, 304, 1206, 1696
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	4 cut(s)	62, 357, 889, 1127
BseMI	GCAATG	1 cut(s)	1330
BseMII	CTCAG	3 cut(s)	160, 186, 1231
BseNI	ACTGG	4 cut(s)	202, 469, 1362, 1849
BseXI	GCAGC	4 cut(s)	583, 611, 1009, 1300
BseYI	CCCAGC	2 cut(s)	294, 1421
BsgI	GTGCAG	1 cut(s)	1307
Bsh1236I	CGCG	2 cut(s)	1091, 1260
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	4 cut(s)	84, 905, 1131, 1717
BshNI	GGYRCC	1 cut(s)	1553
BshVI	ATCGAT	2 cut(s)	326, 1797
BsiEI	CGRYCG	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	5 cut(s)	255, 332, 1026, 1445, 1700
BslFI	GGGAC	2 cut(s)	633, 1438
BslI	CCNNNNNNNGG	4 cut(s)	62, 357, 889, 1127
BsmAI	GTCTC	5 cut(s)	377, 477, 537, 815, 1178
BsmBI	CGTCTC	1 cut(s)	815
BsmFI	GGGAC	2 cut(s)	633, 1438
BsmI	GAATGC	2 cut(s)	1068, 1632
BsnI	GGCC	4 cut(s)	84, 905, 1131, 1717
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	1699
Bsp1407I	TGTACA	1 cut(s)	960
Bsp143I	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
Bsp1720I	GCTNAGC	1 cut(s)	1217
BspACI	CCGC	4 cut(s)	369, 840, 1091, 1260
BspANI	GGCC	4 cut(s)	84, 905, 1131, 1717
BspCNI	CTCAG	3 cut(s)	159, 187, 1230
BspDI	ATCGAT	2 cut(s)	326, 1797
BspEI	TCCGGA	1 cut(s)	1699
BspFNI	CGCG	2 cut(s)	1091, 1260
BspLI	GGNNCC	4 cut(s)	349, 621, 881, 1555
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	436
BspOI	GCTAGC	1 cut(s)	1068
BspPI	GGATC	5 cut(s)	243, 342, 355, 819, 1187
BspT104I	TTCGAA	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	1553
BspTI	CTTAAG	1 cut(s)	1642
BsrBI	CCGCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	1330
BsrGI	TGTACA	1 cut(s)	960
BsrI	ACTGG	4 cut(s)	202, 469, 1362, 1849
BssECI	CCNNGG	3 cut(s)	921, 1121, 1196
BssMI	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
BssNI	GRCGYC	1 cut(s)	1779
BssT1I	CCWWGG	2 cut(s)	1121, 1196
Bst2UI	CCWGG	1 cut(s)	922
Bst4CI	ACNGT	2 cut(s)	748, 1493
BstACI	GRCGYC	1 cut(s)	1779
BstAFI	CTTAAG	1 cut(s)	1642
BstAUI	TGTACA	1 cut(s)	960
BstBAI	YACGTR	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	6 cut(s)	369, 1066, 1258, 1293, 1321, 1810
BstDEI	CTNAG	4 cut(s)	146, 195, 1217, 1650
BstENI	CCTNNNNNAGG	1 cut(s)	1125
BstF5I	GGATG	4 cut(s)	207, 304, 1206, 1696
BstFNI	CGCG	2 cut(s)	1091, 1260
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	7 cut(s)	236, 251, 318, 350, 814, 1195, 1801
BstMAI	GTCTC	5 cut(s)	377, 477, 537, 815, 1178
BstMBI	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 373, 1580
BstNI	CCWGG	1 cut(s)	922
BstNSI	RCATGY	2 cut(s)	1079, 1712
BstSCI	CCNGG	2 cut(s)	254, 920
BstSFI	CTRYAG	2 cut(s)	597, 1489
BstUI	CGCG	2 cut(s)	1091, 1260
BstV1I	GCAGC	4 cut(s)	583, 611, 1009, 1300
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu15I	ATCGAT	2 cut(s)	326, 1797
BsuRI	GGCC	4 cut(s)	84, 905, 1131, 1717
BsuTUI	ATCGAT	2 cut(s)	326, 1797
BtgZI	GCGATG	1 cut(s)	1497
BtsCI	GGATG	4 cut(s)	207, 304, 1206, 1696
BtsIMutI	CAGTG	1 cut(s)	744
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	6 cut(s)	369, 1066, 1258, 1293, 1321, 1810
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	620, 1726
ClaI	ATCGAT	2 cut(s)	326, 1797
CseI	GACGC	1 cut(s)	1787
CviAII	CATG	6 cut(s)	123, 291, 1046, 1076, 1709, 1774
DdeI	CTNAG	4 cut(s)	146, 195, 1217, 1650
DpnI	GATC	7 cut(s)	235, 250, 317, 349, 813, 1194, 1800
DpnII	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
DraI	TTTAAA	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	1733
DriI	GACNNNNNGTC	1 cut(s)	1230
DseDI	GACNNNNNNGTC	1 cut(s)	1733
EaeI	YGGCCR	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	1230
EciI	GGCGGA	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	1121, 1196
Eco32I	GATATC	1 cut(s)	581
Eco47I	GGWCC	2 cut(s)	620, 1726
Eco57I	CTGAAG	1 cut(s)	1008
EcoNI	CCTNNNNNAGG	1 cut(s)	1125
EcoRI	GAATTC	1 cut(s)	1343
EcoRII	CCWGG	1 cut(s)	920
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	2 cut(s)	1121, 1196
EcoT22I	ATGCAT	1 cut(s)	304
ErhI	CCWWGG	2 cut(s)	1121, 1196
Esp3I	CGTCTC	1 cut(s)	815
FaeI	CATG	6 cut(s)	126, 294, 1049, 1079, 1712, 1777
FaqI	GGGAC	2 cut(s)	633, 1438
FatI	CATG	6 cut(s)	122, 290, 1045, 1075, 1708, 1773
FauI	CCCGC	1 cut(s)	376
FauNDI	CATATG	1 cut(s)	1404
FbaI	TGATCA	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	1488
Fnu4HI	GCNGC	4 cut(s)	597, 600, 1023, 1289
FokI	GGATG	4 cut(s)	194, 311, 1213, 1683
Fsp4HI	GCNGC	4 cut(s)	597, 600, 1023, 1289
FspBI	CTAG	8 cut(s)	57, 476, 876, 1065, 1122, 1334, 1548, 1815
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	4 cut(s)	597, 600, 1023, 1289
GsaI	CCCAGC	2 cut(s)	298, 1425
HaeIII	GGCC	4 cut(s)	84, 905, 1131, 1717
HapII	CCGG	5 cut(s)	255, 332, 1026, 1445, 1700
HgaI	GACGC	1 cut(s)	1787
HhaI	GCGC	1 cut(s)	510
Hin1I	GRCGYC	1 cut(s)	1779
Hin1II	CATG	6 cut(s)	126, 294, 1049, 1079, 1712, 1777
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	7 cut(s)	219, 323, 427, 520, 741, 1081, 1703
HpaII	CCGG	5 cut(s)	255, 332, 1026, 1445, 1700
HphI	GGTGA	3 cut(s)	869, 1105, 1171
Hpy166II	GTNNAC	4 cut(s)	961, 1162, 1383, 1489
Hpy188III	TCNNGA	8 cut(s)	182, 190, 476, 1009, 1334, 1511, 1700, 1738
Hpy8I	GTNNAC	4 cut(s)	961, 1162, 1383, 1489
Hpy99I	CGWCG	1 cut(s)	829
HpyAV	CCTTC	7 cut(s)	158, 209, 282, 610, 786, 802, 1385
HpyCH4III	ACNGT	2 cut(s)	748, 1493
HpyCH4IV	ACGT	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 373, 1580
HpyF3I	CTNAG	4 cut(s)	146, 195, 1217, 1650
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	1779
Hsp92II	CATG	6 cut(s)	126, 294, 1049, 1079, 1712, 1777
HspAI	GCGC	1 cut(s)	508
Kpn2I	TCCGGA	1 cut(s)	1699
KpnI	GGTACC	1 cut(s)	1557
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	4 cut(s)	583, 611, 1009, 1300
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	8 cut(s)	57, 476, 876, 1065, 1122, 1334, 1548, 1815
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	3 cut(s)	1151, 1587, 1826
MalI	GATC	7 cut(s)	235, 250, 317, 349, 813, 1194, 1800
MbiI	CCGCTC	1 cut(s)	371
MboI	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	1032
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	304
MroI	TCCGGA	1 cut(s)	1699
MroXI	GAANNNNTTC	2 cut(s)	1004, 1632
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	5 cut(s)	155, 338, 363, 897, 1643
MslI	CAYNNNNRTG	2 cut(s)	1308, 1415
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	1221
MspCI	CTTAAG	1 cut(s)	1642
MspI	CCGG	5 cut(s)	255, 332, 1026, 1445, 1700
MspR9I	CCNGG	2 cut(s)	256, 922
Mva1269I	GAATGC	2 cut(s)	1068, 1632
MvaI	CCWGG	1 cut(s)	922
MvnI	CGCG	2 cut(s)	1091, 1260
MwoI	GCNNNNNNNGC	3 cut(s)	308, 373, 1580
NciI	CCSGG	1 cut(s)	256
NdeI	CATATG	1 cut(s)	1404
NdeII	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
NheI	GCTAGC	1 cut(s)	1064
NlaIII	CATG	6 cut(s)	126, 294, 1049, 1079, 1712, 1777
NlaIV	GGNNCC	4 cut(s)	349, 621, 881, 1555
NmuCI	GTSAC	2 cut(s)	1151, 1587
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	2 cut(s)	1079, 1712
NspV	TTCGAA	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	1415
PcsI	WCGNNNNNNNCGW	1 cut(s)	1344
PctI	GAATGC	2 cut(s)	1068, 1632
PdmI	GAANNNNTTC	2 cut(s)	1004, 1632
PfeI	GAWTC	6 cut(s)	219, 323, 427, 741, 1081, 1703
PkrI	GCNGC	4 cut(s)	598, 601, 1024, 1290
Ple19I	CGATCG	1 cut(s)	236
PleI	GAGTC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	528
Ppu21I	YACGTR	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	920
PspFI	CCCAGC	2 cut(s)	294, 1421
PspGI	CCWGG	1 cut(s)	920
PspN4I	GGNNCC	4 cut(s)	349, 621, 881, 1555
PspPI	GGNCC	2 cut(s)	620, 1726
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	347
PvuI	CGATCG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	1221
RseI	CAYNNNNRTG	2 cut(s)	1308, 1415
SaqAI	TTAA	5 cut(s)	155, 338, 363, 897, 1643
SatI	GCNGC	4 cut(s)	597, 600, 1023, 1289
Sau3AI	GATC	7 cut(s)	233, 248, 315, 347, 811, 1192, 1798
Sau96I	GGNCC	2 cut(s)	620, 1726
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	2 cut(s)	256, 922
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	597, 1489
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	2 cut(s)	620, 1726
SmiMI	CAYNNNNRTG	2 cut(s)	1308, 1415
SmlI	CTYRAG	1 cut(s)	1642
SmoI	CTYRAG	1 cut(s)	1642
SsiI	CCGC	4 cut(s)	369, 840, 1091, 1260
SspMI	CTAG	8 cut(s)	57, 476, 876, 1065, 1122, 1334, 1548, 1815
StyD4I	CCNGG	2 cut(s)	254, 920
StyI	CCWWGG	2 cut(s)	1121, 1196
TaaI	ACNGT	2 cut(s)	748, 1493
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	9 cut(s)	162, 213, 232, 326, 518, 1191, 1347, 1797, 1823
TaqII	GACCGA	1 cut(s)	396
TatI	WGTACW	5 cut(s)	204, 635, 960, 1106, 1327
TfiI	GAWTC	6 cut(s)	219, 323, 427, 741, 1081, 1703
Tru1I	TTAA	5 cut(s)	155, 338, 363, 897, 1643
Tru9I	TTAA	5 cut(s)	155, 338, 363, 897, 1643
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	2 cut(s)	1151, 1587
TseI	GCWGC	4 cut(s)	596, 599, 1022, 1288
Tsp45I	GTSAC	2 cut(s)	1151, 1587
TspDTI	ATGAA	5 cut(s)	108, 407, 821, 1217, 1778
TspRI	CASTG	1 cut(s)	751
Vha464I	CTTAAG	1 cut(s)	1642
VpaK11BI	GGWCC	2 cut(s)	620, 1726
VspI	ATTAAT	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	1125
XapI	RAATTY	4 cut(s)	413, 628, 913, 1343
XbaI	TCTAGA	2 cut(s)	475, 1333
XceI	RCATGY	2 cut(s)	1079, 1712
XmaJI	CCTAGG	1 cut(s)	1121
XmiI	GTMKAC	1 cut(s)	1488
XmnI	GAANNNNTTC	2 cut(s)	1004, 1632
XspI	CTAG	8 cut(s)	57, 476, 876, 1065, 1122, 1334, 1548, 1815
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.