Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001738

Physical Location & Seq

Genomic Coordinates Reverse (-)

15494193 .. 15494495

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG191800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGAGTGCCAGTACATCCTCCAGGGCCTCCGCCTCGTCGATTCCCACTACCTCCAGCTCACCAGCAACTTCCTCCCCCCGCCCAACGCCTCCGACTCCTGCTGGTCCGCCTACCAAACCCTCGCCGACAAATTCGTCGCCGACTTCGACATTCGCTCCACCTGCGGCTTCGAGACCTCCTGGATCTCCCAGTGCTGCATGAACATCACCACCAAGGCTCAATTCGAGGACCTCGTCGGCCAAACCACCCTAGACGGCGTCGTTTCCAACTGCAACCAGTCGCTCGAGAACAACTCCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

100

Amino Acids

11.17

Weight (kDa)

4.14

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	2 - 99	1.9e-25	SPARK

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48010
fragaria_vesca	FvH4_2g24291 FvH4_2g24291 FvH4_6g05000 FvH4_6g05020
malus_domestica	MD03G1272600.v1.1 MD04G1211500.v1.1 MD11G1293500.v1.1 MD12G1226500.v1.1
prunus_persica	Prupe.6G332100_v2.0.a1 Prupe.6G332200_v2.0.a1 Prupe.8G248800_v2.0.a1
pyrus_communis	pycom03g21710 pycom11g25970
rosa_chinensis	RchiOBHm_Chr3g0453511 RchiOBHm_Chr3g0453521 RchiOBHm_Chr5g0002211 RchiOBHm_Chr6g0292151
rosa_laevigata	RLG00000012057 RLG00000025506 RLG00000025507 RLG00000031008
rosa_multiflora	Rmu_co8460761.1_g000001 Rmu_sc0000510.1_g000020
rosa_roxburghii	Rroxscaffold_1G00073750 Rroxscaffold_2G00125960 Rroxscaffold_6G00430490 Rroxscaffold_7G00175400
rosa_rugosa	Rorug02G0649700 Rorug02G0649800 Rorug06G0223800
rosa_samantha	Rh1BG359400 Rh3AG052600 Rh3AG052700 Rh3BG054100 Rh3BG054200 Rh3CG053400 Rh3CG053500 Rh3DG054200 Rh3DG054300 Rh6AG337200 Rh6BG344400 Rh6CG351200 Rh6DG337400 Rh7BG191800
rosa_wichuraiana	Rw3G004050 Rw3G004060 Rw6G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	4 cut(s)	31, 80, 108, 165
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	21, 179
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	25, 238
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	25, 105, 229
AsuHPI	GGTGA	2 cut(s)	52, 199
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	105, 229
BbvI	GCAGC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	23, 181
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	166, 196
BlsI	GCNGC	2 cut(s)	167, 197
Bme1390I	CCNGG	2 cut(s)	23, 181
Bme18I	GGWCC	2 cut(s)	105, 229
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	25, 105, 229
BmrFI	CCNGG	2 cut(s)	23, 181
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	1 cut(s)	278
BpmI	CTGGAG	2 cut(s)	5, 38
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	22, 213
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 140, 170
Bse1I	ACTGG	3 cut(s)	10, 190, 277
BseBI	CCWGG	2 cut(s)	23, 181
BseDI	CCNNGG	2 cut(s)	22, 213
BseGI	GGATG	1 cut(s)	15
BseNI	ACTGG	3 cut(s)	10, 190, 277
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	27, 240
BsiHKCI	CYCGRG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	27, 240
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	4 cut(s)	31, 80, 108, 165
BspANI	GGCC	2 cut(s)	27, 240
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	10, 190, 277
BssECI	CCNNGG	2 cut(s)	22, 213
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	23, 181
BstACI	GRCGYC	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	2 cut(s)	23, 181
BstSCI	CCNGG	2 cut(s)	21, 179
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	27, 240
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	25, 105, 229
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	5 cut(s)	27, 58, 168, 218, 240
CviKI_1	RGCY	5 cut(s)	27, 58, 168, 218, 240
CviQI	GTAC	1 cut(s)	13
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	238
EciI	GGCGGA	2 cut(s)	20, 97
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	105, 229
Eco88I	CYCGRG	1 cut(s)	284
EcoO109I	RGGNCCY	2 cut(s)	25, 229
EcoRII	CCWGG	2 cut(s)	21, 179
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	166, 196
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	2 cut(s)	166, 196
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	166, 196
GsuI	CTGGAG	2 cut(s)	5, 38
HaeIII	GGCC	2 cut(s)	27, 240
HgaI	GACGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	202
HinfI	GANTC	2 cut(s)	41, 95
HphI	GGTGA	2 cut(s)	52, 199
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	172, 286
Hpy99I	CGWCG	4 cut(s)	41, 140, 239, 263
HpyCH4V	TGCA	2 cut(s)	198, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	251
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MflI	RGATCY	1 cut(s)	183
MluCI	AATT	2 cut(s)	131, 221
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	117, 291
MspR9I	CCNGG	2 cut(s)	23, 181
MvaI	CCWGG	2 cut(s)	23, 181
MwoI	GCNNNNNNNGC	1 cut(s)	162
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 231
PfeI	GAWTC	1 cut(s)	41
PflFI	GACNNNGTC	2 cut(s)	233, 257
PfoI	TCCNGGA	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	167, 197
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	21, 179
PspGI	CCWGG	2 cut(s)	21, 179
PspPI	GGNCC	3 cut(s)	25, 105, 229
PspPPI	RGGWCCY	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	183
PsyI	GACNNNGTC	2 cut(s)	233, 257
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SatI	GCNGC	2 cut(s)	166, 196
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	3 cut(s)	25, 105, 229
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	23, 181
SetI	ASST	5 cut(s)	54, 60, 164, 179, 234
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	2 cut(s)	105, 229
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	131, 221
SsiI	CCGC	4 cut(s)	31, 80, 108, 165
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	21, 179
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	5 cut(s)	39, 147, 171, 225, 285
TasI	AATT	2 cut(s)	131, 221
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	1 cut(s)	197
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	197
Tth111I	GACNNNGTC	2 cut(s)	233, 257
VpaK11BI	GGWCC	2 cut(s)	105, 229
XapI	RAATTY	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	284
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.