Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

30464440 .. 30466308

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1177700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTGCTGCTCGTGGGCTGGATATTCCTGCCGTGGTATGACTTGATTGTGCAGTTTGATCCTCCAGATGATCCCAAGGAATATATCCACCGTGTTGGTCGAACAGCTCGAGGAGAAGGTGGAAAAGGAAAGGCATTCCTTCTCCTCATTCCTGAAGAGATGCAGTTTATTCGCTATTTGATGGATGAAAAGGTCCCCGTTGAAGAACATAAATACAAGGAGAGTATGCTGAAAAATGTGCAGTCGCAACTGGTGGAGATGGTTCAGCGCAACGATTATCTCCGCAAATCAGCAAAAGAGGCATATAAATCTTATCTATTAGCGTATAATTCACACTCTATGAAGGACATCTTTAACGTCCACCGACTTGATCTGCAGGCGGTTGCAGCTTCATTTTGCTTTCTGAGTCCCCCCAAGATGAATCTGAACTTAAACAGCAACGCTTCAAAGTTCAGGAAGAAGATGAGCAAAGTAAAAGGAAGTCGTAACGGATTCAGCGTGAGCAATCCTTACGGTAGGCAAAAAGGCCGAGATGAAATTCGACAATTTGTAAGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

187

Amino Acids

21.76

Weight (kDa)

9.71

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTE_SPB4	PF13959	91 - 140	1.7e-18	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	283, 380
AclWI	GGATC	2 cut(s)	53, 65
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	203, 447
AluBI	AGCT	2 cut(s)	107, 389
AluI	AGCT	2 cut(s)	107, 389
AlwI	GGATC	2 cut(s)	53, 65
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	2 cut(s)	7, 386
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	2 cut(s)	175, 253
BceAI	ACGGC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BfmI	CTRYAG	1 cut(s)	374
BisI	GCNGC	2 cut(s)	8, 387
BlsI	GCNGC	2 cut(s)	9, 388
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	32, 75
Bse1I	ACTGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	32, 75
BseGI	GGATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	126, 134
BseXI	GCAGC	1 cut(s)	398
BsgI	GTGCAG	2 cut(s)	71, 260
BshFI	GGCC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	179, 393
BsmFI	GGGAC	2 cut(s)	179, 393
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	528
BsoBI	CYCGRG	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	58, 70, 370
BspACI	CCGC	2 cut(s)	283, 380
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	378
BspPI	GGATC	2 cut(s)	53, 65
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	32, 75
BssMI	GATC	3 cut(s)	58, 70, 370
BssSI	CACGAG	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	92, 515
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	3 cut(s)	61, 73, 373
BstMBI	GATC	3 cut(s)	58, 70, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 386
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	193
CviJI	RGCY	4 cut(s)	18, 107, 389, 528
CviKI_1	RGCY	4 cut(s)	18, 107, 389, 528
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	3 cut(s)	60, 72, 372
DpnII	GATC	3 cut(s)	58, 70, 370
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	8 cut(s)	39, 84, 210, 227, 304, 306, 327, 341
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	2 cut(s)	179, 393
Fnu4HI	GCNGC	2 cut(s)	8, 387
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	8, 387
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	2 cut(s)	8, 387
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	528
HhaI	GCGC	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	406, 421, 492
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	405, 426
Hpy188III	TCNNGA	3 cut(s)	65, 152, 454
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	3 cut(s)	110, 149, 337
HpyCH4III	ACNGT	2 cut(s)	92, 515
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	52, 163, 241, 376, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 386
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	1 cut(s)	357
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	58, 70, 370
LpnPI	CCDG	7 cut(s)	4, 41, 78, 165, 236, 362, 439
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	3 cut(s)	60, 72, 372
MboI	GATC	3 cut(s)	58, 70, 370
MboII	GAAGA	4 cut(s)	167, 215, 469, 472
MluCI	AATT	3 cut(s)	328, 537, 545
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	72, 104, 155, 292
MseI	TTAA	2 cut(s)	354, 431
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	299, 386
NdeII	GATC	3 cut(s)	58, 70, 370
NlaIV	GGNNCC	1 cut(s)	195
NmeAIII	GCCGAG	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	2 cut(s)	106, 495
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	421, 492
PkrI	GCNGC	2 cut(s)	9, 388
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PspXI	VCTCGAGB	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	354, 431
SatI	GCNGC	2 cut(s)	8, 387
Sau3AI	GATC	3 cut(s)	58, 70, 370
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	415
SetI	ASST	5 cut(s)	109, 121, 195, 360, 391
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	374
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	193
SlaI	CTCGAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	328, 537, 545
SsiI	CCGC	2 cut(s)	283, 380
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	92, 515
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	100, 109, 541
TasI	AATT	3 cut(s)	328, 537, 545
TfiI	GAWTC	2 cut(s)	421, 492
Tru1I	TTAA	2 cut(s)	354, 431
Tru9I	TTAA	2 cut(s)	354, 431
TseI	GCWGC	2 cut(s)	7, 386
TspDTI	ATGAA	5 cut(s)	201, 356, 381, 434, 549
TspGWI	ACGGA	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	537
XhoI	CTCGAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.