Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

91593232 .. 91596619

Gene Structure 3388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG533800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACCAAGATCATTAAGGAGATGTTGCCTCCACATGTACGCGTCGCAAGAGATGCTCAAGATCTTCTCATCGAGTGTTTTGTTGAAGATCTTGCTGGCTTTTCCTTCCAGACAACGCCTATGTATATAGATGTGGATGATGGGAGATCTAAGGCCACGAATATATATAGGGCTGCAACAGGGCTATTGTCTTGTGCCAAGTTGGTGCTCGTGGACCGGCTATCCCTGCCGTGGACTGGATTATGCAGTGTGATCCTCCAGATGAACCCAAGGTGTGAATATATCCACAAGGCTGGTCGAACAGCTCGTGGGGAAGGTGGAAAAGGAAAAGCACTACTTTTCCTCATTCCCGAAGAGTTGCAGGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

123

Amino Acids

13.63

Weight (kDa)

7.67

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	42
AclWI	GGATC	1 cut(s)	247
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	231, 236
AflIII	ACRYGT	2 cut(s)	34, 40
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	214
BauI	CACGAG	2 cut(s)	209, 306
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	214
BglII	AGATCT	3 cut(s)	61, 88, 146
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	230, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 236
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	230, 269
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	231, 236
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	231, 236
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	5 cut(s)	9, 61, 88, 146, 252
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	42
BspPI	GGATC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	230, 269
BssMI	GATC	5 cut(s)	9, 61, 88, 146, 252
BssSI	CACGAG	2 cut(s)	209, 306
BssT1I	CCWWGG	1 cut(s)	269
Bst2BI	CACGAG	2 cut(s)	209, 306
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	97, 363
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	5 cut(s)	12, 64, 91, 149, 255
BstMBI	GATC	5 cut(s)	9, 61, 88, 146, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 226
BstNSI	RCATGY	1 cut(s)	38
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	3 cut(s)	61, 88, 146
BstXI	CCANNNNNNTGG	1 cut(s)	293
BstYI	RGATCY	3 cut(s)	61, 88, 146
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	97, 363
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	8 cut(s)	99, 155, 173, 184, 220, 293, 305, 365
CviKI_1	RGCY	8 cut(s)	99, 155, 173, 184, 220, 293, 305, 365
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	5 cut(s)	11, 63, 90, 148, 254
DpnII	GATC	5 cut(s)	9, 61, 88, 146, 252
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	1 cut(s)	38
FaiI	YATR	9 cut(s)	36, 122, 126, 128, 164, 166, 168, 244, 282
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	217
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	38
HpaII	CCGG	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	214, 234
Hpy188III	TCNNGA	4 cut(s)	59, 109, 259, 350
Hpy8I	GTNNAC	2 cut(s)	214, 234
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	115, 308
HpyCH4V	TGCA	3 cut(s)	176, 246, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 226
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	38
Kzo9I	GATC	5 cut(s)	9, 61, 88, 146, 252
LpnPI	CCDG	9 cut(s)	81, 122, 165, 222, 230, 239, 272, 279, 347
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	43
MalI	GATC	5 cut(s)	11, 63, 90, 148, 254
MboI	GATC	5 cut(s)	9, 61, 88, 146, 252
MboII	GAAGA	3 cut(s)	56, 98, 365
MflI	RGATCY	3 cut(s)	61, 88, 146
MhlI	GDGCHC	1 cut(s)	210
MluI	ACGCGT	1 cut(s)	40
MnlI	CCTC	3 cut(s)	39, 266, 353
MseI	TTAA	1 cut(s)	15
MspI	CCGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	53, 226
NdeII	GATC	5 cut(s)	9, 61, 88, 146, 252
NlaIII	CATG	1 cut(s)	38
NspI	RCATGY	1 cut(s)	38
PciI	ACATGT	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	175
PscI	ACATGT	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	3 cut(s)	61, 88, 146
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	5 cut(s)	9, 61, 88, 146, 252
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	3 cut(s)	275, 307, 319
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	269
TaqI	TCGA	2 cut(s)	72, 298
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	214
XceI	RCATGY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.