Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

89049953 .. 89054055

Gene Structure 4103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG561600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACCAAGATCATTAAGGAGATGTTGCCTCCACATGTACGCGTCGCAAGAGATGCTCAAGATCTTCTCATCGAGTGTTGTAATAGGCAAACAGCTTTATTTTCTGCAACCCAGACTAAGAAGGTTGAAGATCTTGCTGGCTTTTCCTTCCGGACAACGCCTATGTATATAGATGTGGATGATGGGAGAACTAAGGCCACGAATATATATAGGGCTGCAACAGGGCTATTGTCTTGTGCCAAGTTGGTGCTCGTGGACCGGGTATCCCTGCCGTGGACTGGATTATGCAGTGTGATCCTCCAGATGAACCCAAGATGTGAATATATCCACAAGGCTGGTCGAACAGCTCGTGGGGAAGGTGGAAAAGGAAAAGCACTACTTTTCCTCATTCCCGAAGAAATCCAAAAAGCAAAAGTCCCTGTTAAAGAGTATGAATTTAATCAGAAGAAGCTAAAAAAATGTGCAATCTCAGCTGGAGAAGACATCTTTAATGTTCACTGGCTTGATCTCCAGGCTGTTGCTTCTTCATTTTGCTTTTCTAATCCACCTAAGGTAAATTTAAACTTAGACAGCAGTGCATCAATGTTCAGGAAGAACATGCACAGAGTGGATGGAATTCGACATGGAATCAATCCTAGAAATCCTTATGGAAGGCAAAACGGTGGAGATGATACAAGACAATTTGTGAGGCATCAGGATATAGAAGCCTCACCCTGCAGCTCTGCAGTAATTTTCTCCACAAGTTTTGTATTTTTTTTGGCTGATGGAACAAATCAAAATGAAACAAAGTTTTTCTGGGGTTTTCCTTCCTTTCACTCTGATCTTGTAACAATGGAGACACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

281

Amino Acids

31.54

Weight (kDa)

8.98

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	150
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	3 cut(s)	434, 556, 615
AdeI	CACNNNGTG	1 cut(s)	607
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	273, 278
AflIII	ACRYGT	2 cut(s)	34, 40
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	5 cut(s)	95, 347, 451, 473, 720
AluI	AGCT	5 cut(s)	95, 347, 451, 473, 720
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	830
AlwI	GGATC	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	215, 717
ApoI	RAATTY	3 cut(s)	434, 556, 615
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	549
BauI	CACGAG	2 cut(s)	251, 348
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	202, 729
BccI	CCATC	3 cut(s)	176, 605, 758
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	830
BfaI	CTAG	1 cut(s)	636
BfmI	CTRYAG	2 cut(s)	715, 723
BfuI	GTATCC	1 cut(s)	274
BglII	AGATCT	2 cut(s)	61, 130
BisI	GCNGC	2 cut(s)	216, 718
BlsI	GCNGC	2 cut(s)	217, 719
Bme1390I	CCNGG	2 cut(s)	260, 512
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	260, 512
BmsI	GCATC	3 cut(s)	43, 587, 700
BpiI	GAAGAC	1 cut(s)	486
BpmI	CTGGAG	3 cut(s)	284, 494, 495
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	1 cut(s)	827
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 278
Bse1I	ACTGG	2 cut(s)	283, 503
Bse21I	CCTNAGG	1 cut(s)	549
BseAI	TCCGGA	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	184, 616
BseLI	CCNNNNNNNGG	2 cut(s)	273, 278
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	283, 503
BseXI	GCAGC	2 cut(s)	202, 729
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	151, 259
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	273, 278
BsmAI	GTCTC	1 cut(s)	830
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	482
BspEI	TCCGGA	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	42
BspMAI	CTGCAG	2 cut(s)	719, 727
BspPI	GGATC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	283, 503
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
BssSI	CACGAG	2 cut(s)	251, 348
Bst2BI	CACGAG	2 cut(s)	251, 348
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	662, 843
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	5 cut(s)	117, 192, 469, 549, 565
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	184, 616
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	6 cut(s)	12, 64, 133, 297, 508, 823
BstMAI	GTCTC	1 cut(s)	830
BstMBI	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 470
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	2 cut(s)	38, 601
BstSCI	CCNGG	2 cut(s)	258, 510
BstSFI	CTRYAG	2 cut(s)	715, 723
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	202, 729
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	2 cut(s)	61, 130
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	2 cut(s)	61, 130
Bsu36I	CCTNAGG	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	184, 616
BtsI	GCAGTG	2 cut(s)	295, 580
BtsIMutI	CAGTG	4 cut(s)	295, 496, 580, 839
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	3 cut(s)	35, 598, 623
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	5 cut(s)	117, 192, 469, 549, 565
DpnI	GATC	6 cut(s)	11, 63, 132, 296, 507, 822
DpnII	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
DraI	TTTAAA	1 cut(s)	561
DraIII	CACNNNGTG	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	510
FaeI	CATG	3 cut(s)	38, 601, 626
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	34, 597, 622
Fnu4HI	GCNGC	2 cut(s)	216, 718
FokI	GGATG	2 cut(s)	191, 623
Fsp4HI	GCNGC	2 cut(s)	216, 718
FspBI	CTAG	1 cut(s)	636
GluI	GCNGC	2 cut(s)	216, 718
GsuI	CTGGAG	3 cut(s)	284, 494, 495
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	151, 259
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	38, 601, 626
HinfI	GANTC	1 cut(s)	627
HpaII	CCGG	2 cut(s)	151, 259
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	3 cut(s)	256, 276, 496
Hpy188I	TCNGA	2 cut(s)	444, 820
Hpy188III	TCNNGA	6 cut(s)	59, 151, 301, 392, 589, 695
Hpy8I	GTNNAC	3 cut(s)	256, 276, 496
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	5 cut(s)	115, 157, 350, 645, 816
HpyCH4III	ACNGT	2 cut(s)	662, 843
HpyCH4V	TGCA	8 cut(s)	107, 218, 288, 464, 578, 601, 717, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 470
HpyF3I	CTNAG	5 cut(s)	117, 192, 469, 549, 565
Hsp92II	CATG	3 cut(s)	38, 601, 626
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
Lsp1109I	GCAGC	2 cut(s)	202, 729
LweI	GCATC	3 cut(s)	43, 587, 700
MaeI	CTAG	1 cut(s)	636
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	6 cut(s)	11, 63, 132, 296, 507, 822
MboI	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
MboII	GAAGA	7 cut(s)	56, 140, 407, 457, 491, 516, 604
MflI	RGATCY	2 cut(s)	61, 130
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	5 cut(s)	434, 556, 615, 680, 729
MluI	ACGCGT	1 cut(s)	40
MnlI	CCTC	5 cut(s)	39, 308, 395, 681, 718
MroI	TCCGGA	1 cut(s)	150
MseI	TTAA	5 cut(s)	15, 423, 438, 489, 560
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	151, 259
MspR9I	CCNGG	2 cut(s)	260, 512
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	53, 470
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
NlaIII	CATG	3 cut(s)	38, 601, 626
NspI	RCATGY	2 cut(s)	38, 601
PciI	ACATGT	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	627
PkrI	GCNGC	2 cut(s)	217, 719
PscI	ACATGT	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	256
PstI	CTGCAG	2 cut(s)	719, 727
PsuI	RGATCY	2 cut(s)	61, 130
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	5 cut(s)	15, 423, 438, 489, 560
SatI	GCNGC	2 cut(s)	216, 718
Sau3AI	GATC	6 cut(s)	9, 61, 130, 294, 505, 820
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	260, 512
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	9 cut(s)	97, 126, 349, 361, 453, 475, 550, 555, 722
SfaNI	GCATC	3 cut(s)	43, 587, 700
SfcI	CTRYAG	2 cut(s)	715, 723
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	5 cut(s)	434, 556, 615, 680, 729
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	258, 510
TaaI	ACNGT	2 cut(s)	662, 843
TaqI	TCGA	3 cut(s)	72, 340, 619
TasI	AATT	5 cut(s)	434, 556, 615, 680, 729
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	5 cut(s)	15, 423, 438, 489, 560
Tru9I	TTAA	5 cut(s)	15, 423, 438, 489, 560
TscAI	CASTG	4 cut(s)	295, 503, 580, 846
TseI	GCWGC	2 cut(s)	215, 717
TspDTI	ATGAA	4 cut(s)	320, 447, 516, 795
TspRI	CASTG	4 cut(s)	295, 503, 580, 846
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	434, 556, 615
XceI	RCATGY	2 cut(s)	38, 601
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.