Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001444.1

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Reverse (-)

50493 .. 51127

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001444.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggtcttcttctcttcttgcaactcagtaaaattccactctgaccttcttagatacgttaatgtggattgctttgatatccatggaaagcaaaagcagcagaagaggacaggtactttttttgactactgcaaagcagagaaaataatcttactttgtactgaggttggtgctcgtggaccgggtatccctgccgtggactggattatgcagtgtgatcctccagatgaacccaaggaatatatccacaaggctggtcgaacagctcgtggggaaggtggaaaaggaaaagcactacttttcctcagtcccgaagagttgcaggctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

110

Amino Acids

12.34

Weight (kDa)

7.63

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	2 cut(s)	115, 160
AfiI	CCNNNNNNNGG	2 cut(s)	196, 201
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	179
BauI	CACGAG	2 cut(s)	174, 267
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	82, 195, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 201
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	82, 195, 234
BseLI	CCNNNNNNNGG	2 cut(s)	196, 201
BseMII	CTCAG	3 cut(s)	39, 153, 319
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	196, 201
BsmFI	GGGAC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	217
Bsp19I	CCATGG	1 cut(s)	82
BspCNI	CTCAG	3 cut(s)	38, 154, 318
BspPI	GGATC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	82, 195, 234
BssMI	GATC	1 cut(s)	217
BssSI	CACGAG	2 cut(s)	174, 267
BssT1I	CCWWGG	2 cut(s)	82, 234
Bst2BI	CACGAG	2 cut(s)	174, 267
Bst6I	CTCTTC	3 cut(s)	19, 98, 309
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	4 cut(s)	25, 50, 162, 305
BstDSI	CCRYGG	2 cut(s)	82, 195
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	254
BsuI	GTATCC	1 cut(s)	197
BtgI	CCRYGG	2 cut(s)	82, 195
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	114, 159
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	3 cut(s)	254, 266, 326
CviKI_1	RGCY	3 cut(s)	254, 266, 326
CviQI	GTAC	2 cut(s)	114, 159
DdeI	CTNAG	4 cut(s)	25, 50, 162, 305
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	3 cut(s)	19, 98, 309
EarI	CTCTTC	3 cut(s)	19, 98, 309
Eco130I	CCWWGG	2 cut(s)	82, 234
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	179
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	82, 234
ErhI	CCWWGG	2 cut(s)	82, 234
FaeI	CATG	1 cut(s)	86
FaiI	YATR	3 cut(s)	84, 209, 243
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	207
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	1 cut(s)	86
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	179, 199
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	224, 311
Hpy8I	GTNNAC	2 cut(s)	179, 199
HpyAV	CCTTC	2 cut(s)	56, 269
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	21, 132, 211, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	4 cut(s)	25, 50, 162, 305
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	96, 187, 195, 204, 237, 240, 308
Lsp1109I	GCAGC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	6, 115, 326
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	1 cut(s)	32
MnlI	CCTC	4 cut(s)	99, 157, 231, 314
MseI	TTAA	1 cut(s)	60
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	115, 160
RsaNI	GTAC	2 cut(s)	114, 159
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	6 cut(s)	48, 60, 115, 168, 268, 280
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	82, 234
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	259
TasI	AATT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.