Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

89013167 .. 89013990

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAGGAGAAGTTAGTTGCCAACAACTACCATCTGAACCGTGCAGCAAAAGATGCATATAGGTCTTATCTATTAGCATATAATACACACTCTATGAAGGACATCTTTAATGTTCACTGGCTTGATCTCCAGGTACTTGTCGTTTTCTTGTCCAACGAAAATGAAGGATTGCTAAAATCTAAATTTATCTCTAGTCCTTGGATGTTTCAAACTCGTAAACTTTGTGGAATTCTGATTAATTGCTATGTGATGTTGTTTGTACAGGCTGTTGCTTCTTCATTTTGCTTTTCTAATCCACCCAAGGTAAATTTAAACTTAGACAGCAGTGCATCAATGTTCAGGAAGAACATGCACAGAGTGGATGGAATTCGACATGGAATCAATCCTAGAAATCCTTATGGAAGGAAGGCAAAACGGTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

141

Amino Acids

16.46

Weight (kDa)

10.02

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTE_SPB4	PF13959	9 - 44	1.7e-10	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	182, 228, 307, 366
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	2 cut(s)	135, 261
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	4 cut(s)	182, 228, 307, 366
AseI	ATTAAT	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	39, 356
BciT130I	CCWGG	1 cut(s)	131
BfaI	CTAG	2 cut(s)	192, 387
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	43, 338
BpmI	CTGGAG	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	197, 300
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	197, 300
BseGI	GGATG	2 cut(s)	207, 367
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	197, 300
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	2 cut(s)	197, 300
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	41, 417
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	207, 367
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	207, 367
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	115, 331
Csp6I	GTAC	2 cut(s)	134, 260
CviAII	CATG	2 cut(s)	349, 374
CviJI	RGCY	2 cut(s)	121, 266
CviKI_1	RGCY	2 cut(s)	121, 266
CviQI	GTAC	2 cut(s)	134, 260
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	312
DraIII	CACNNNGTG	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	197, 300
EcoRI	GAATTC	2 cut(s)	228, 366
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	2 cut(s)	197, 300
EcoT22I	ATGCAT	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	197, 300
FaeI	CATG	2 cut(s)	352, 377
FaiI	YATR	9 cut(s)	58, 60, 79, 81, 95, 246, 350, 375, 399
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	2 cut(s)	348, 373
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	214, 374
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	2 cut(s)	192, 387
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	352, 377
HinfI	GANTC	1 cut(s)	378
Hpy166II	GTNNAC	2 cut(s)	115, 218
Hpy188I	TCNGA	2 cut(s)	36, 234
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	2 cut(s)	115, 218
HpyAV	CCTTC	4 cut(s)	91, 158, 396, 400
HpyCH4III	ACNGT	2 cut(s)	41, 417
HpyCH4V	TGCA	5 cut(s)	4, 44, 56, 329, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	352, 377
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	103, 116, 143, 248, 325
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	2 cut(s)	43, 338
MaeI	CTAG	2 cut(s)	192, 387
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	267, 355
MluCI	AATT	5 cut(s)	182, 228, 238, 307, 366
MmeI	TCCRAC	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	3 cut(s)	108, 237, 311
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	352, 377
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
RsaI	GTAC	2 cut(s)	135, 261
RsaNI	GTAC	2 cut(s)	134, 260
SaqAI	TTAA	3 cut(s)	108, 237, 311
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	3 cut(s)	65, 135, 306
SfaNI	GCATC	2 cut(s)	43, 338
Sse9I	AATT	5 cut(s)	182, 228, 238, 307, 366
SspMI	CTAG	2 cut(s)	192, 387
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	197, 300
TaaI	ACNGT	2 cut(s)	41, 417
TaqI	TCGA	1 cut(s)	370
TasI	AATT	5 cut(s)	182, 228, 238, 307, 366
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	3 cut(s)	108, 237, 311
Tru9I	TTAA	3 cut(s)	108, 237, 311
TscAI	CASTG	2 cut(s)	122, 331
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	110, 177, 267
TspRI	CASTG	2 cut(s)	122, 331
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	4 cut(s)	182, 228, 307, 366
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	2 cut(s)	192, 387
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.