Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

19683168 .. 19683854

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTATTATGTGTTCAGGATGAAAAAGTCCCCGTTGAAGAACAGAAATACAAGGAGAGTATGCTGAAAAATGTGCAGTCGCAACTGGTAATGTTCTGTTGTTCAATCGTAATCTACTACCATACAACAACTATTTCCAAGGAACCTTATGTGTTGCTCTGTTTGATGCAGGTGAAGATGGTTCAGCGCAACGATTATCTCCGCAAATCAGCAAAAGAAGCATATAAATCTTATCTATTAGCGTATGATTCACACTCTATGAAGGACATCTTTAACGTCCACGGACTTGATCTGCAGGCGGTTGCAGCTTCATTTTGCTTTCTGAGTCCCCCCAAGATGAATCTGAACTTAAACAGCAATGCTTCAAAGTTCAGGAAAAAGATGGGCAAAGTACGAGGAAGTCGAAATGGATTCAGCATGAGCAGTCCCTACGGAAGGCAAAAAGGCGGAGGTGAAATTCGACAATTTGTAAGACATAAGGGAGTCTTGAGCCAAAAGAAAGAATCCACATTAACTTGTGTAAAAAGTGATCAAATGGTTAAGATATGGAAAAGTGATTTCTGCCCTCTTTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

9.57

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	3 cut(s)	202, 299, 447
AcsI	RAATTY	1 cut(s)	456
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	38, 105, 366
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	184, 464
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	172, 376
BclI	TGATCA	1 cut(s)	529
BfmI	CTRYAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	138, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	138, 280
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	95
BslFI	GGGAC	3 cut(s)	14, 312, 411
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmFI	GGGAC	3 cut(s)	14, 312, 411
Bsp143I	GATC	2 cut(s)	289, 529
BspACI	CCGC	3 cut(s)	202, 299, 447
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	138, 280
BssMI	GATC	2 cut(s)	289, 529
BssT1I	CCWWGG	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	280
BstENI	CCTNNNNNAGG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	292, 532
BstMBI	GATC	2 cut(s)	289, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 305
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	1 cut(s)	418
CviJI	RGCY	2 cut(s)	308, 492
CviKI_1	RGCY	2 cut(s)	308, 492
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	291, 531
DpnII	GATC	2 cut(s)	289, 529
EciI	GGCGGA	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	421
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 470, 502
FaqI	GGGAC	3 cut(s)	14, 312, 411
FatI	CATG	1 cut(s)	417
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	306
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	6 cut(s)	248, 325, 340, 411, 483, 503
HphI	GGTGA	2 cut(s)	184, 464
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	324, 345
Hpy188III	TCNNGA	3 cut(s)	17, 373, 487
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	256, 429
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	76, 169, 295, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 305
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	289, 529
LpnPI	CCDG	5 cut(s)	2, 71, 155, 281, 358
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	276
MalI	GATC	2 cut(s)	291, 531
MboI	GATC	2 cut(s)	289, 529
MboII	GAAGA	2 cut(s)	50, 187
MluCI	AATT	2 cut(s)	456, 464
MlyI	GAGTC	2 cut(s)	334, 492
MnlI	CCTC	3 cut(s)	389, 443, 576
MseI	TTAA	5 cut(s)	273, 350, 512, 540, 577
MwoI	GCNNNNNNNGC	2 cut(s)	218, 305
NdeII	GATC	2 cut(s)	289, 529
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	1 cut(s)	144
PaqCI	CACCTGC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	400
PfeI	GAWTC	4 cut(s)	248, 340, 411, 503
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	333, 491
PpsI	GAGTC	2 cut(s)	333, 491
PspN4I	GGNNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	297
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	5 cut(s)	273, 350, 512, 540, 577
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	289, 529
SchI	GAGTC	2 cut(s)	334, 492
SetI	ASST	5 cut(s)	148, 174, 279, 310, 454
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	2 cut(s)	456, 464
SsiI	CCGC	3 cut(s)	202, 299, 447
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	403, 460
TasI	AATT	2 cut(s)	456, 464
TfiI	GAWTC	4 cut(s)	248, 340, 411, 503
Tru1I	TTAA	5 cut(s)	273, 350, 512, 540, 577
Tru9I	TTAA	5 cut(s)	273, 350, 512, 540, 577
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	36, 275, 300, 353
TspGWI	ACGGA	2 cut(s)	297, 447
XagI	CCTNNNNNAGG	1 cut(s)	433
XapI	RAATTY	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.