DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18600 |
| fragaria_vesca | FvH4_5g12870 |
| malus_domestica | MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1 |
| prunus_persica | Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1 |
| pyrus_communis | pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320 |
| rosa_chinensis | RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361 |
| rosa_laevigata | RLG00000004982 RLG00000037030 |
| rosa_multiflora | Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045 |
| rosa_roxburghii | Rroxscaffold_1G00001130 Rroxscaffold_3G00269690 |
| rosa_samantha | Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500 |
| rosa_wichuraiana | Rw5G049900 Rw7G005460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1676 |
| AccI | GTMKAC | 1 cut(s) | 700 |
| AccIII | TCCGGA | 1 cut(s) | 1662 |
| AciI | CCGC | 2 cut(s) | 1499, 1589 |
| AclI | AACGTT | 2 cut(s) | 1166, 1566 |
| AclWI | GGATC | 5 cut(s) | 292, 441, 454, 1262, 1274 |
| AcsI | RAATTY | 4 cut(s) | 322, 1082, 1630, 1743 |
| AcuI | CTGAAG | 1 cut(s) | 614 |
| AfaI | GTAC | 2 cut(s) | 599, 1210 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 112, 518, 840, 960 |
| AgsI | TTSAA | 9 cut(s) | 187, 322, 343, 386, 751, 884, 907, 1412, 1636 |
| AjiI | CACGTC | 1 cut(s) | 1252 |
| AjnI | CCWGG | 2 cut(s) | 426, 694 |
| AluBI | AGCT | 8 cut(s) | 434, 479, 773, 826, 851, 1316, 1438, 1598 |
| AluI | AGCT | 8 cut(s) | 434, 479, 773, 826, 851, 1316, 1438, 1598 |
| Alw21I | GWGCWC | 1 cut(s) | 302 |
| Alw26I | GTCTC | 3 cut(s) | 32, 1458, 1580 |
| AlwI | GGATC | 5 cut(s) | 292, 441, 454, 1262, 1274 |
| Ama87I | CYCGRG | 1 cut(s) | 1317 |
| Aor13HI | TCCGGA | 1 cut(s) | 1662 |
| AoxI | GGCC | 4 cut(s) | 114, 201, 345, 1228 |
| ApeKI | GCWGC | 4 cut(s) | 434, 635, 1220, 1595 |
| ApoI | RAATTY | 4 cut(s) | 322, 1082, 1630, 1743 |
| AseI | ATTAAT | 1 cut(s) | 1425 |
| AspLEI | GCGC | 3 cut(s) | 57, 1494, 1677 |
| AspS9I | GGNCC | 4 cut(s) | 115, 1093, 1158, 1402 |
| AsuC2I | CCSGG | 1 cut(s) | 451 |
| AsuHPI | GGTGA | 5 cut(s) | 161, 659, 943, 1562, 1639 |
| AvaI | CYCGRG | 1 cut(s) | 1317 |
| AvaII | GGWCC | 3 cut(s) | 1093, 1158, 1402 |
| BaeGI | GKGCMC | 1 cut(s) | 990 |
| BamHI | GGATCC | 1 cut(s) | 446 |
| BauI | CACGAG | 1 cut(s) | 1224 |
| BbsI | GAAGAC | 4 cut(s) | 179, 228, 461, 1048 |
| Bbv12I | GWGCWC | 1 cut(s) | 302 |
| BbvI | GCAGC | 4 cut(s) | 421, 647, 1207, 1607 |
| BccI | CCATC | 6 cut(s) | 88, 409, 720, 926, 1045, 1462 |
| BceAI | ACGGC | 2 cut(s) | 560, 1407 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1361, 1395 |
| BciT130I | CCWGG | 2 cut(s) | 428, 696 |
| BcnI | CCSGG | 1 cut(s) | 451 |
| BcoDI | GTCTC | 3 cut(s) | 32, 1458, 1580 |
| BfaI | CTAG | 2 cut(s) | 438, 1232 |
| BfmI | CTRYAG | 1 cut(s) | 1583 |
| BglII | AGATCT | 1 cut(s) | 886 |
| BisI | GCNGC | 5 cut(s) | 435, 636, 1221, 1500, 1596 |
| BlsI | GCNGC | 5 cut(s) | 436, 637, 1222, 1501, 1597 |
| Bme1390I | CCNGG | 3 cut(s) | 428, 451, 696 |
| Bme18I | GGWCC | 3 cut(s) | 1093, 1158, 1402 |
| BmeT110I | CYCGRG | 1 cut(s) | 1317 |
| BmgBI | CACGTC | 1 cut(s) | 1252 |
| BmgT120I | GGNCC | 4 cut(s) | 115, 1093, 1158, 1402 |
| BmiI | GGNNCC | 2 cut(s) | 448, 1404 |
| BmrFI | CCNGG | 3 cut(s) | 428, 451, 696 |
| BmrI | ACTGGG | 1 cut(s) | 984 |
| BmsI | GCATC | 3 cut(s) | 1359, 1661, 1662 |
| BmuI | ACTGGG | 1 cut(s) | 984 |
| BpiI | GAAGAC | 4 cut(s) | 179, 228, 461, 1048 |
| BpmI | CTGGAG | 2 cut(s) | 701, 1257 |
| BpuMI | CCSGG | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 6 cut(s) | 427, 576, 694, 726, 1132, 1284 |
| BsaWI | WCCGGW | 1 cut(s) | 1662 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 112, 518, 840, 960 |
| Bse1I | ACTGG | 1 cut(s) | 990 |
| BseAI | TCCGGA | 1 cut(s) | 1662 |
| BseBI | CCWGG | 2 cut(s) | 428, 696 |
| BseDI | CCNNGG | 6 cut(s) | 427, 576, 694, 726, 1132, 1284 |
| BseGI | GGATG | 1 cut(s) | 937 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 112, 518, 840, 960 |
| BseMII | CTCAG | 2 cut(s) | 369, 1089 |
| BseNI | ACTGG | 1 cut(s) | 990 |
| BseRI | GAGGAG | 4 cut(s) | 257, 260, 501, 1010 |
| BseSI | GKGCMC | 1 cut(s) | 990 |
| BseXI | GCAGC | 4 cut(s) | 421, 647, 1207, 1607 |
| BsgI | GTGCAG | 3 cut(s) | 654, 1280, 1469 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1309, 1593 |
| BshFI | GGCC | 4 cut(s) | 116, 203, 347, 1230 |
| BsiEI | CGRYCG | 2 cut(s) | 1309, 1593 |
| BsiHKAI | GWGCWC | 1 cut(s) | 302 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1317 |
| BsiSI | CCGG | 2 cut(s) | 450, 1663 |
| BslFI | GGGAC | 2 cut(s) | 1388, 1602 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 112, 518, 840, 960 |
| BsmAI | GTCTC | 3 cut(s) | 32, 1458, 1580 |
| BsmBI | CGTCTC | 2 cut(s) | 32, 1580 |
| BsmFI | GGGAC | 2 cut(s) | 1388, 1602 |
| BsmI | GAATGC | 1 cut(s) | 1728 |
| BsnI | GGCC | 4 cut(s) | 116, 203, 347, 1230 |
| BsoBI | CYCGRG | 1 cut(s) | 1317 |
| Bsp1286I | GDGCHC | 2 cut(s) | 302, 990 |
| Bsp13I | TCCGGA | 1 cut(s) | 1662 |
| Bsp143I | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| Bsp19I | CCATGG | 1 cut(s) | 1132 |
| BspACI | CCGC | 2 cut(s) | 1499, 1589 |
| BspANI | GGCC | 4 cut(s) | 116, 203, 347, 1230 |
| BspCNI | CTCAG | 2 cut(s) | 370, 1088 |
| BspEI | TCCGGA | 1 cut(s) | 1662 |
| BspLI | GGNNCC | 2 cut(s) | 448, 1404 |
| BspMAI | CTGCAG | 1 cut(s) | 1587 |
| BspPI | GGATC | 5 cut(s) | 292, 441, 454, 1262, 1274 |
| BspQI | GCTCTTC | 1 cut(s) | 1407 |
| BsrI | ACTGG | 1 cut(s) | 990 |
| BssECI | CCNNGG | 6 cut(s) | 427, 576, 694, 726, 1132, 1284 |
| BssMI | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| BssSI | CACGAG | 1 cut(s) | 1224 |
| BssT1I | CCWWGG | 3 cut(s) | 726, 1132, 1284 |
| Bst2BI | CACGAG | 1 cut(s) | 1224 |
| Bst2UI | CCWGG | 2 cut(s) | 428, 696 |
| Bst4CI | ACNGT | 3 cut(s) | 161, 613, 1574 |
| Bst6I | CTCTTC | 6 cut(s) | 129, 192, 1069, 1148, 1359, 1407 |
| BstC8I | GCNNGC | 1 cut(s) | 1587 |
| BstDEI | CTNAG | 5 cut(s) | 378, 945, 1041, 1075, 1100 |
| BstDSI | CCRYGG | 2 cut(s) | 576, 1132 |
| BstEII | GGTNACC | 1 cut(s) | 949 |
| BstF5I | GGATG | 1 cut(s) | 937 |
| BstHHI | GCGC | 3 cut(s) | 57, 1494, 1677 |
| BstKTI | GATC | 7 cut(s) | 287, 414, 449, 889, 1270, 1282, 1582 |
| BstMAI | GTCTC | 3 cut(s) | 32, 1458, 1580 |
| BstMBI | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| BstMCI | CGRYCG | 2 cut(s) | 1309, 1593 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1508, 1595 |
| BstNI | CCWGG | 2 cut(s) | 428, 696 |
| BstPI | GGTNACC | 1 cut(s) | 949 |
| BstSCI | CCNGG | 3 cut(s) | 426, 449, 694 |
| BstSFI | CTRYAG | 1 cut(s) | 1583 |
| BstSLI | GKGCMC | 1 cut(s) | 990 |
| BstV1I | GCAGC | 4 cut(s) | 421, 647, 1207, 1607 |
| BstV2I | GAAGAC | 4 cut(s) | 179, 228, 461, 1048 |
| BstX2I | RGATCY | 3 cut(s) | 284, 446, 886 |
| BstYI | RGATCY | 3 cut(s) | 284, 446, 886 |
| BsuRI | GGCC | 4 cut(s) | 116, 203, 347, 1230 |
| BtgI | CCRYGG | 2 cut(s) | 576, 1132 |
| BtrI | CACGTC | 1 cut(s) | 1252 |
| BtsCI | GGATG | 1 cut(s) | 937 |
| BtsI | GCAGTG | 1 cut(s) | 1654 |
| BtsIMutI | CAGTG | 2 cut(s) | 997, 1654 |
| Cac8I | GCNNGC | 1 cut(s) | 1587 |
| CfoI | GCGC | 3 cut(s) | 57, 1494, 1677 |
| Cfr13I | GGNCC | 4 cut(s) | 115, 1093, 1158, 1402 |
| Csp6I | GTAC | 2 cut(s) | 598, 1209 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 259, 294 |
| CviAII | CATG | 1 cut(s) | 1133 |
| CviQI | GTAC | 2 cut(s) | 598, 1209 |
| DdeI | CTNAG | 5 cut(s) | 378, 945, 1041, 1075, 1100 |
| DpnI | GATC | 7 cut(s) | 286, 413, 448, 888, 1269, 1281, 1581 |
| DpnII | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| Eam1104I | CTCTTC | 6 cut(s) | 129, 192, 1069, 1148, 1359, 1407 |
| EarI | CTCTTC | 6 cut(s) | 129, 192, 1069, 1148, 1359, 1407 |
| Eco130I | CCWWGG | 3 cut(s) | 726, 1132, 1284 |
| Eco32I | GATATC | 1 cut(s) | 1129 |
| Eco47I | GGWCC | 3 cut(s) | 1093, 1158, 1402 |
| Eco57I | CTGAAG | 1 cut(s) | 614 |
| Eco88I | CYCGRG | 1 cut(s) | 1317 |
| Eco91I | GGTNACC | 1 cut(s) | 949 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1402 |
| EcoO65I | GGTNACC | 1 cut(s) | 949 |
| EcoRII | CCWGG | 2 cut(s) | 426, 694 |
| EcoRV | GATATC | 1 cut(s) | 1129 |
| EcoT14I | CCWWGG | 3 cut(s) | 726, 1132, 1284 |
| ErhI | CCWWGG | 3 cut(s) | 726, 1132, 1284 |
| Esp3I | CGTCTC | 2 cut(s) | 32, 1580 |
| FaeI | CATG | 1 cut(s) | 1136 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1544, 1576 |
| FaqI | GGGAC | 2 cut(s) | 1388, 1602 |
| FatI | CATG | 1 cut(s) | 1132 |
| FblI | GTMKAC | 1 cut(s) | 700 |
| Fnu4HI | GCNGC | 5 cut(s) | 435, 636, 1221, 1500, 1596 |
| FokI | GGATG | 1 cut(s) | 944 |
| Fsp4HI | GCNGC | 5 cut(s) | 435, 636, 1221, 1500, 1596 |
| FspAI | RTGCGCAY | 1 cut(s) | 1676 |
| FspBI | CTAG | 2 cut(s) | 438, 1232 |
| FspI | TGCGCA | 1 cut(s) | 1676 |
| GlaI | GCGC | 3 cut(s) | 56, 1493, 1676 |
| GluI | GCNGC | 5 cut(s) | 435, 636, 1221, 1500, 1596 |
| GsuI | CTGGAG | 2 cut(s) | 701, 1257 |
| HaeIII | GGCC | 4 cut(s) | 116, 203, 347, 1230 |
| HapII | CCGG | 2 cut(s) | 450, 1663 |
| HhaI | GCGC | 3 cut(s) | 57, 1494, 1677 |
| Hin1II | CATG | 1 cut(s) | 1136 |
| Hin6I | GCGC | 3 cut(s) | 55, 1492, 1675 |
| HinP1I | GCGC | 3 cut(s) | 55, 1492, 1675 |
| HincII | GTYRAC | 1 cut(s) | 701 |
| HindII | GTYRAC | 1 cut(s) | 701 |
| HindIII | AAGCTT | 1 cut(s) | 824 |
| HinfI | GANTC | 9 cut(s) | 89, 305, 314, 382, 457, 732, 1033, 1197, 1698 |
| HpaII | CCGG | 2 cut(s) | 450, 1663 |
| HphI | GGTGA | 5 cut(s) | 161, 659, 943, 1562, 1639 |
| Hpy166II | GTNNAC | 4 cut(s) | 507, 701, 1249, 1570 |
| Hpy188I | TCNGA | 6 cut(s) | 85, 94, 416, 567, 594, 1093 |
| Hpy188III | TCNNGA | 9 cut(s) | 271, 353, 707, 718, 884, 1274, 1361, 1577, 1663 |
| Hpy8I | GTNNAC | 4 cut(s) | 507, 701, 1249, 1570 |
| Hpy99I | CGWCG | 1 cut(s) | 38 |
| HpyAV | CCTTC | 8 cut(s) | 140, 181, 599, 953, 1106, 1319, 1546, 1618 |
| HpyCH4III | ACNGT | 3 cut(s) | 161, 613, 1574 |
| HpyCH4IV | ACGT | 6 cut(s) | 16, 658, 1107, 1166, 1251, 1566 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1508, 1595 |
| HpyF3I | CTNAG | 5 cut(s) | 378, 945, 1041, 1075, 1100 |
| HpySE526I | ACGT | 6 cut(s) | 16, 658, 1107, 1166, 1251, 1566 |
| Hsp92II | CATG | 1 cut(s) | 1136 |
| HspAI | GCGC | 3 cut(s) | 55, 1492, 1675 |
| Kpn2I | TCCGGA | 1 cut(s) | 1662 |
| Kzo9I | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| LguI | GCTCTTC | 1 cut(s) | 1407 |
| LmnI | GCTCC | 1 cut(s) | 431 |
| Lsp1109I | GCAGC | 4 cut(s) | 421, 647, 1207, 1607 |
| LweI | GCATC | 3 cut(s) | 1359, 1661, 1662 |
| MaeI | CTAG | 2 cut(s) | 438, 1232 |
| MaeII | ACGT | 6 cut(s) | 16, 658, 1107, 1166, 1251, 1566 |
| MaeIII | GTNAC | 3 cut(s) | 17, 949, 1070 |
| MalI | GATC | 7 cut(s) | 286, 413, 448, 888, 1269, 1281, 1581 |
| MboI | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| MfeI | CAATTG | 1 cut(s) | 1457 |
| MflI | RGATCY | 3 cut(s) | 284, 446, 886 |
| MhlI | GDGCHC | 2 cut(s) | 302, 990 |
| MlyI | GAGTC | 3 cut(s) | 299, 451, 1027 |
| MmeI | TCCRAC | 1 cut(s) | 569 |
| MroI | TCCGGA | 1 cut(s) | 1662 |
| MseI | TTAA | 5 cut(s) | 822, 1110, 1425, 1563, 1640 |
| MspA1I | CMGCKG | 1 cut(s) | 479 |
| MspI | CCGG | 2 cut(s) | 450, 1663 |
| MspR9I | CCNGG | 3 cut(s) | 428, 451, 696 |
| MunI | CAATTG | 1 cut(s) | 1457 |
| Mva1269I | GAATGC | 1 cut(s) | 1728 |
| MvaI | CCWGG | 2 cut(s) | 428, 696 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1508, 1595 |
| NciI | CCSGG | 1 cut(s) | 451 |
| NcoI | CCATGG | 1 cut(s) | 1132 |
| NdeII | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| NlaIII | CATG | 1 cut(s) | 1136 |
| NlaIV | GGNNCC | 2 cut(s) | 448, 1404 |
| NmuCI | GTSAC | 2 cut(s) | 17, 949 |
| NsbI | TGCGCA | 1 cut(s) | 1676 |
| PaeR7I | CTCGAG | 1 cut(s) | 1317 |
| PciSI | GCTCTTC | 1 cut(s) | 1407 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1315 |
| PctI | GAATGC | 1 cut(s) | 1728 |
| PfeI | GAWTC | 6 cut(s) | 89, 314, 382, 732, 1197, 1698 |
| PflFI | GACNNNGTC | 1 cut(s) | 1036 |
| PfoI | TCCNGGA | 1 cut(s) | 449 |
| PkrI | GCNGC | 5 cut(s) | 436, 637, 1222, 1501, 1597 |
| PleI | GAGTC | 3 cut(s) | 299, 451, 1027 |
| PpsI | GAGTC | 3 cut(s) | 299, 451, 1027 |
| PpuMI | RGGWCCY | 1 cut(s) | 1402 |
| PshBI | ATTAAT | 1 cut(s) | 1425 |
| Psp1406I | AACGTT | 2 cut(s) | 1166, 1566 |
| Psp5II | RGGWCCY | 1 cut(s) | 1402 |
| Psp6I | CCWGG | 2 cut(s) | 426, 694 |
| PspEI | GGTNACC | 1 cut(s) | 949 |
| PspGI | CCWGG | 2 cut(s) | 426, 694 |
| PspN4I | GGNNCC | 2 cut(s) | 448, 1404 |
| PspPI | GGNCC | 4 cut(s) | 115, 1093, 1158, 1402 |
| PspPPI | RGGWCCY | 1 cut(s) | 1402 |
| PspXI | VCTCGAGB | 1 cut(s) | 1317 |
| PstI | CTGCAG | 1 cut(s) | 1587 |
| PsuI | RGATCY | 3 cut(s) | 284, 446, 886 |
| PsyI | GACNNNGTC | 1 cut(s) | 1036 |
| PvuII | CAGCTG | 1 cut(s) | 479 |
| RsaI | GTAC | 2 cut(s) | 599, 1210 |
| RsaNI | GTAC | 2 cut(s) | 598, 1209 |
| SalI | GTCGAC | 1 cut(s) | 699 |
| SapI | GCTCTTC | 1 cut(s) | 1407 |
| SaqAI | TTAA | 5 cut(s) | 822, 1110, 1425, 1563, 1640 |
| SatI | GCNGC | 5 cut(s) | 435, 636, 1221, 1500, 1596 |
| Sau3AI | GATC | 7 cut(s) | 284, 411, 446, 886, 1267, 1279, 1579 |
| Sau96I | GGNCC | 4 cut(s) | 115, 1093, 1158, 1402 |
| SchI | GAGTC | 3 cut(s) | 299, 451, 1027 |
| ScrFI | CCNGG | 3 cut(s) | 428, 451, 696 |
| SduI | GDGCHC | 2 cut(s) | 302, 990 |
| SfaNI | GCATC | 3 cut(s) | 1359, 1661, 1662 |
| SfcI | CTRYAG | 1 cut(s) | 1583 |
| Sfr274I | CTCGAG | 1 cut(s) | 1317 |
| SinI | GGWCC | 3 cut(s) | 1093, 1158, 1402 |
| SlaI | CTCGAG | 1 cut(s) | 1317 |
| SmlI | CTYRAG | 1 cut(s) | 1317 |
| SmoI | CTYRAG | 1 cut(s) | 1317 |
| SsiI | CCGC | 2 cut(s) | 1499, 1589 |
| SspI | AATATT | 1 cut(s) | 183 |
| SspMI | CTAG | 2 cut(s) | 438, 1232 |
| StyD4I | CCNGG | 3 cut(s) | 426, 449, 694 |
| StyI | CCWWGG | 3 cut(s) | 726, 1132, 1284 |
| TaaI | ACNGT | 3 cut(s) | 161, 613, 1574 |
| TaiI | ACGT | 6 cut(s) | 19, 661, 1110, 1169, 1254, 1569 |
| TaqI | TCGA | 7 cut(s) | 100, 700, 1309, 1318, 1578, 1690, 1747 |
| TaqII | GACCGA | 2 cut(s) | 1026, 1295 |
| TatI | WGTACW | 1 cut(s) | 1208 |
| TauI | GCSGC | 1 cut(s) | 1502 |
| TfiI | GAWTC | 6 cut(s) | 89, 314, 382, 732, 1197, 1698 |
| Tru1I | TTAA | 5 cut(s) | 822, 1110, 1425, 1563, 1640 |
| Tru9I | TTAA | 5 cut(s) | 822, 1110, 1425, 1563, 1640 |
| TscAI | CASTG | 2 cut(s) | 997, 1654 |
| TseFI | GTSAC | 2 cut(s) | 17, 949 |
| TseI | GCWGC | 4 cut(s) | 434, 635, 1220, 1595 |
| Tsp45I | GTSAC | 2 cut(s) | 17, 949 |
| TspDTI | ATGAA | 9 cut(s) | 306, 724, 783, 824, 972, 1008, 1565, 1590, 1755 |
| TspGWI | ACGGA | 1 cut(s) | 44 |
| TspRI | CASTG | 2 cut(s) | 997, 1654 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1036 |
| VpaK11BI | GGWCC | 3 cut(s) | 1093, 1158, 1402 |
| VspI | ATTAAT | 1 cut(s) | 1425 |
| XapI | RAATTY | 4 cut(s) | 322, 1082, 1630, 1743 |
| XhoI | CTCGAG | 1 cut(s) | 1317 |
| XmiI | GTMKAC | 1 cut(s) | 700 |
| XspI | CTAG | 2 cut(s) | 438, 1232 |