Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

897544 .. 899287

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1015500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGGAAGAATCAGTATACCAAAGGGATAGTCTTCTTCTGTTCTTGTGACTCAGTCAAATTCCACTCTGACCTTCTTCGATCCCTCAATGCGAATTGCTTTGGTGTCCATGAAAAGCAAACGCAGCAGGAGAGGACAACTACTTTTTTTGACTTCTGCAAAGCAGAGAAAGGGTTCTTACTTTGTACTAATGTTGCTGCTTGTGGACTGGATATTCCTGCAGTGGACTGGATTTTGCAGTTTGATCCTCCAGATGACCTCATGGAATACCTACGCAGGGTTGTTCGAAGAGCTCGAGGAGAATGCGAAGTAGGAAGGGAACTCCTTTTCCTCATTCCTGAAGAGATGCGAATTATACGCTTTTTGGAGGCCGCCAATATCTTCCTTCGATCTCGGGTATTTAAGGTGAATAGAAAAGTGCAGGCTCAGCTGCAGACGGTTGGGGACAACTACTACCTGCGCAAATCAGCAAAAGAAGCGTATAAATCGTATCTAATAGCATATAATTCACACTCCATGAAGGACTATTTTAATTTCGACCGGCTCGATTTGCAGGGCGTTGCAGCTTCGTTTTGCGTTTCGATACCTCCACGCCAGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

201

Amino Acids

23.19

Weight (kDa)

8.76

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	4 - 99	1.8e-16	Helicase conserved C-terminal domain
CTE_SPB4	PF13959	150 - 198	7.4e-15	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	2 cut(s)	75, 239
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	600
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	3 cut(s)	293, 430, 566
AluI	AGCT	3 cut(s)	293, 430, 566
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	75, 239
Ama87I	CYCGRG	2 cut(s)	294, 393
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	4 cut(s)	124, 197, 430, 563
ApoI	RAATTY	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	1 cut(s)	286
AvaI	CYCGRG	2 cut(s)	294, 393
BanII	GRGCYC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	4 cut(s)	136, 184, 417, 575
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BfmI	CTRYAG	2 cut(s)	219, 431
BfuAI	ACCTGC	1 cut(s)	465
BisI	GCNGC	5 cut(s)	125, 198, 372, 431, 564
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	5 cut(s)	126, 199, 373, 432, 565
BmeT110I	CYCGRG	2 cut(s)	294, 393
BmgBI	CACGTC	1 cut(s)	600
BmsI	GCATC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	2 cut(s)	213, 233
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	66, 440
BseNI	ACTGG	2 cut(s)	213, 233
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	4 cut(s)	136, 184, 417, 575
BsgI	GTGCAG	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	2 cut(s)	294, 393
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	371
BsoBI	CYCGRG	2 cut(s)	294, 393
Bsp119I	TTCGAA	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	80, 244, 389
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	2 cut(s)	65, 439
BspMAI	CTGCAG	2 cut(s)	223, 435
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	75, 239
BspQI	GCTCTTC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	213, 233
BssAI	RCCGGY	1 cut(s)	540
BssMI	GATC	3 cut(s)	80, 244, 389
BssNAI	GTATAC	1 cut(s)	18
Bst1107I	GTATAC	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	283, 336
BstBI	TTCGAA	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	52, 426
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	3 cut(s)	83, 247, 392
BstMBI	GATC	3 cut(s)	80, 244, 389
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 427, 476, 550
BstSFI	CTRYAG	2 cut(s)	219, 431
BstV1I	GCAGC	4 cut(s)	136, 184, 417, 575
BstV2I	GAAGAC	1 cut(s)	25
BstZ17I	GTATAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	371
BtrI	CACGTC	1 cut(s)	600
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	3 cut(s)	110, 262, 517
CviJI	RGCY	6 cut(s)	293, 371, 425, 430, 544, 566
CviKI_1	RGCY	6 cut(s)	293, 371, 425, 430, 544, 566
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	2 cut(s)	52, 426
DpnI	GATC	3 cut(s)	82, 246, 391
DpnII	GATC	3 cut(s)	80, 244, 389
Eam1104I	CTCTTC	2 cut(s)	283, 336
EarI	CTCTTC	2 cut(s)	283, 336
Ecl136II	GAGCTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	2 cut(s)	294, 393
EcoICRI	GAGCTC	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	3 cut(s)	113, 265, 520
FaiI	YATR	8 cut(s)	18, 111, 263, 356, 483, 502, 504, 518
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	109, 261, 516
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	5 cut(s)	125, 198, 372, 431, 564
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	5 cut(s)	125, 198, 372, 431, 564
FspI	TGCGCA	1 cut(s)	461
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	5 cut(s)	125, 198, 372, 431, 564
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	541
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	113, 265, 520
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	10, 50
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	3 cut(s)	18, 206, 226
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	251, 338
Hpy8I	GTNNAC	3 cut(s)	18, 206, 226
HpyAV	CCTTC	4 cut(s)	83, 309, 395, 514
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	7 cut(s)	159, 221, 238, 421, 433, 553, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 427, 476, 550
HpyF3I	CTNAG	2 cut(s)	52, 426
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	3 cut(s)	113, 265, 520
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	80, 244, 389
LguI	GCTCTTC	1 cut(s)	283
Lsp1109I	GCAGC	4 cut(s)	136, 184, 417, 575
LweI	GCATC	1 cut(s)	336
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	3 cut(s)	82, 246, 391
MboI	GATC	3 cut(s)	80, 244, 389
MboII	GAAGA	7 cut(s)	19, 25, 28, 68, 300, 353, 373
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	5 cut(s)	59, 94, 351, 505, 532
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	95, 126, 258, 269, 290, 341, 361, 597
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	2 cut(s)	402, 531
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	1 cut(s)	541
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	124, 427, 476, 550
NdeII	GATC	3 cut(s)	80, 244, 389
NlaIII	CATG	3 cut(s)	113, 265, 520
NmuCI	GTSAC	1 cut(s)	47
NsbI	TGCGCA	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	2 cut(s)	292, 543
PctI	GAATGC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	126, 199, 373, 432, 565
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	295
PspXI	VCTCGAGB	1 cut(s)	294
PstI	CTGCAG	2 cut(s)	223, 435
PsyI	GACNNNGTC	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	402, 531
SatI	GCNGC	5 cut(s)	125, 198, 372, 431, 564
Sau3AI	GATC	3 cut(s)	80, 244, 389
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	2 cut(s)	219, 431
Sfr274I	CTCGAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	5 cut(s)	59, 94, 351, 505, 532
SsiI	CCGC	1 cut(s)	372
SstI	GAGCTC	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	7 cut(s)	79, 286, 295, 388, 537, 546, 581
TasI	AATT	5 cut(s)	59, 94, 351, 505, 532
TatI	WGTACW	1 cut(s)	185
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	402, 531
Tru9I	TTAA	2 cut(s)	402, 531
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	4 cut(s)	124, 197, 430, 563
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	126, 533
TspRI	CASTG	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.