Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

89011476 .. 89012826

Gene Structure 1351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAACCATGATGCATCCATGTGTTTCTGGTTTTTTTTTTCTAGTAGCAGGACTGCAGCAGTTCAAAATAACTTTTTATGGTTTTTTCCTTTTGTGCTGATCAAGTTTCTATTGAATGTGCAGAATAGGCAAACAGCTTTATTTTCTGCAACCCAGACTAAGAAGGTTGAAGATCTTGCTGGCTTTTCCTTCCAGACAACGCCTATGTATATAGATGTGGATGATGGGAGATCTAAGGGCTGCAACAGGGCTATTGTCTTGTGCCAAGTGCCAAGAGATTTTATTCTCCTATATTCTTTCCTGACGAGGAATCTATCAAAGAAAGTGATGGTCTTCTTCTCTTCTTGCAACTCAGTAAAATTCCACTCTGACCTTCTTAGATACGTTATTGTGGATTGCTTTGATATCCATGGAAAGCAAAAGCAGCAGAAGAGGACAGGTACTTTTTTTTACTACTGCAAAGCAGAGAAAATAATCTTACTTTGTACTGAGGTTGGTGCTCGTGGACCGGGTATCCCTGCCGTGGACTGGATTATGCAGTGTGATCCTCCAGATGAACCCAAGGAATATATCCACAAGGCTGGTCGAACAGCTCGTGGGGAAGGTGGAAAAGGAAAAGCACTACTTTTCCTCATTCCCGAAGAGTTGCAGGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

219

Amino Acids

25.04

Weight (kDa)

9.0

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	97 - 200	1.2e-16	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	2 cut(s)	442, 487
AfiI	CCNNNNNNNGG	2 cut(s)	523, 528
AgsI	TTSAA	3 cut(s)	65, 115, 170
AluBI	AGCT	2 cut(s)	137, 593
AluI	AGCT	2 cut(s)	137, 593
Alw21I	GWGCWC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	56, 240, 424
ApoI	RAATTY	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	506
BauI	CACGAG	2 cut(s)	501, 594
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	68, 227, 436
BccI	CCATC	2 cut(s)	218, 322
BceAI	ACGGC	1 cut(s)	506
BciVI	GTATCC	1 cut(s)	524
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	510
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	524
BglII	AGATCT	2 cut(s)	172, 230
BisI	GCNGC	3 cut(s)	57, 241, 425
BlsI	GCNGC	3 cut(s)	58, 242, 426
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	409, 522, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 528
Bse1I	ACTGG	1 cut(s)	533
BseDI	CCNNGG	3 cut(s)	409, 522, 561
BseGI	GGATG	2 cut(s)	14, 226
BseLI	CCNNNNNNNGG	2 cut(s)	523, 528
BseMII	CTCAG	2 cut(s)	366, 480
BseNI	ACTGG	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	68, 227, 436
BsgI	GTGCAG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	523, 528
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	99, 172, 230, 544
Bsp19I	CCATGG	1 cut(s)	409
BspCNI	CTCAG	2 cut(s)	365, 481
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	533
BssECI	CCNNGG	3 cut(s)	409, 522, 561
BssMI	GATC	4 cut(s)	99, 172, 230, 544
BssSI	CACGAG	2 cut(s)	501, 594
BssT1I	CCWWGG	2 cut(s)	409, 561
Bst2BI	CACGAG	2 cut(s)	501, 594
Bst6I	CTCTTC	3 cut(s)	346, 425, 636
BstC8I	GCNNGC	2 cut(s)	181, 651
BstDEI	CTNAG	5 cut(s)	159, 234, 352, 377, 489
BstDSI	CCRYGG	2 cut(s)	409, 522
BstF5I	GGATG	2 cut(s)	14, 226
BstKTI	GATC	4 cut(s)	102, 175, 233, 547
BstMBI	GATC	4 cut(s)	99, 172, 230, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 424
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	68, 227, 436
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	172, 230
BstXI	CCANNNNNNTGG	1 cut(s)	581
BstYI	RGATCY	2 cut(s)	172, 230
BsuI	GTATCC	1 cut(s)	524
BtgI	CCRYGG	2 cut(s)	409, 522
BtsCI	GGATG	2 cut(s)	14, 226
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	1 cut(s)	545
Cac8I	GCNNGC	2 cut(s)	181, 651
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	441, 486
CviAII	CATG	3 cut(s)	8, 19, 410
CviJI	RGCY	7 cut(s)	137, 183, 240, 251, 581, 593, 653
CviKI_1	RGCY	7 cut(s)	137, 183, 240, 251, 581, 593, 653
CviQI	GTAC	2 cut(s)	441, 486
DdeI	CTNAG	5 cut(s)	159, 234, 352, 377, 489
DpnI	GATC	4 cut(s)	101, 174, 232, 546
DpnII	GATC	4 cut(s)	99, 172, 230, 544
Eam1104I	CTCTTC	3 cut(s)	346, 425, 636
EarI	CTCTTC	3 cut(s)	346, 425, 636
Eco130I	CCWWGG	2 cut(s)	409, 561
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	506
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	409, 561
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	2 cut(s)	409, 561
FaeI	CATG	3 cut(s)	11, 22, 413
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	3 cut(s)	7, 18, 409
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	57, 241, 425
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	57, 241, 425
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	3 cut(s)	57, 241, 425
GsuI	CTGGAG	1 cut(s)	534
HapII	CCGG	1 cut(s)	509
Hin1II	CATG	3 cut(s)	11, 22, 413
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	506, 526
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	4 cut(s)	193, 301, 551, 638
Hpy8I	GTNNAC	2 cut(s)	506, 526
HpyAV	CCTTC	4 cut(s)	157, 199, 383, 596
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	9 cut(s)	14, 56, 121, 149, 243, 348, 459, 538, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 424
HpyF3I	CTNAG	5 cut(s)	159, 234, 352, 377, 489
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	11, 22, 413
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	99, 172, 230, 544
Lsp1109I	GCAGC	3 cut(s)	68, 227, 436
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	384
MalI	GATC	4 cut(s)	101, 174, 232, 546
MboI	GATC	4 cut(s)	99, 172, 230, 544
MboII	GAAGA	6 cut(s)	182, 325, 328, 333, 442, 653
MflI	RGATCY	2 cut(s)	172, 230
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	1 cut(s)	359
MnlI	CCTC	5 cut(s)	300, 426, 484, 558, 641
Mph1103I	ATGCAT	1 cut(s)	16
MslI	CAYNNNNRTG	1 cut(s)	19
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	127, 424
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	4 cut(s)	99, 172, 230, 544
NlaIII	CATG	3 cut(s)	11, 22, 413
NsiI	ATGCAT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	58, 242, 426
PspPI	GGNCC	1 cut(s)	506
PstI	CTGCAG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	172, 230
RsaI	GTAC	2 cut(s)	442, 487
RsaNI	GTAC	2 cut(s)	441, 486
RseI	CAYNNNNRTG	1 cut(s)	19
SatI	GCNGC	3 cut(s)	57, 241, 425
Sau3AI	GATC	4 cut(s)	99, 172, 230, 544
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	8 cut(s)	139, 168, 375, 387, 442, 495, 595, 607
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	2 cut(s)	409, 561
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	586
TasI	AATT	1 cut(s)	359
TatI	WGTACW	1 cut(s)	485
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	545
TseI	GCWGC	3 cut(s)	56, 240, 424
TspDTI	ATGAA	2 cut(s)	17, 570
TspRI	CASTG	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.