Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

19680422 .. 19682160

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTGCTGTCGCATTATGAGTTTTACGATAAATCATCTTGATTCTTCCCTGAATATTTTCATCTCAATAATTCAGACCCACGCTGTGGCAGAGCACCTCCTCAAGTATCACTCACAGACTGTCGACTTGGTTATTGGTGGTGCAAATCGGAGAAGAGAAGCAGAAATTCTTGTAAAAGGAGTAAATCTATTGGTTGCAACCCCTGGCCGACTTGTTGACCATCTCCAGAATACCAAGGGATTTCTATATAAGAACTTGAAGGTCACTAATGAAGGGCTAAAACAAGGCTATGTTATTGTGCCCAGCGATAAGAGATTTATTCTCCTATATACTTTTCTGAAGACCACTCGTTCTAAGAAAGTGATGGTCTTCTTCTCTTCTTGTAACTCAGTTAAATTCCACTCTGAACTTCTTAAATACATTAATGTGGAGTGCTTTGATATCCATGGAAAGCAAAAGCAACAGAAGAGGACAAAAACTTTCTTTGACCTTTGCAAAGCAGAGAAAGGAATCTTACTTTGTACTGATGTTGCTGCTCGTGGGCTGGATATTCCTGCCGTGGTATGTTTCCTTCAATTGTTATGTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

198

Amino Acids

22.35

Weight (kDa)

9.45

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	165, 395
AcuI	CTGAAG	1 cut(s)	359
AdeI	CACNNNGTG	1 cut(s)	85
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	259, 575
AjnI	CCWGG	1 cut(s)	202
Alw21I	GWGCWC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	2 cut(s)	165, 395
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BauI	CACGAG	1 cut(s)	537
BbsI	GAAGAC	2 cut(s)	347, 361
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	2 cut(s)	228, 358
BceAI	ACGGC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	204
BpiI	GAAGAC	2 cut(s)	347, 361
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	202, 234, 445, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	4 cut(s)	202, 234, 445, 558
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	96, 303
Bsp19I	CCATGG	1 cut(s)	445
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	401
BssECI	CCNNGG	4 cut(s)	202, 234, 445, 558
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	2 cut(s)	234, 445
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	3 cut(s)	148, 382, 461
BstDEI	CTNAG	2 cut(s)	354, 388
BstDSI	CCRYGG	2 cut(s)	445, 558
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	2 cut(s)	347, 361
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	445, 558
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	1 cut(s)	446
CviJI	RGCY	4 cut(s)	207, 277, 288, 544
CviKI_1	RGCY	4 cut(s)	207, 277, 288, 544
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	2 cut(s)	354, 388
DraIII	CACNNNGTG	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	3 cut(s)	148, 382, 461
EarI	CTCTTC	3 cut(s)	148, 382, 461
Eco130I	CCWWGG	2 cut(s)	234, 445
Eco32I	GATATC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	234, 445
ErhI	CCWWGG	2 cut(s)	234, 445
FaeI	CATG	1 cut(s)	449
FaiI	YATR	9 cut(s)	17, 247, 249, 291, 328, 330, 447, 565, 583
FatI	CATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	534
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	449
HincII	GTYRAC	2 cut(s)	124, 217
HindII	GTYRAC	2 cut(s)	124, 217
HinfI	GANTC	2 cut(s)	41, 510
Hpy166II	GTNNAC	2 cut(s)	124, 217
Hpy188I	TCNGA	4 cut(s)	75, 150, 339, 406
Hpy188III	TCNNGA	2 cut(s)	38, 226
Hpy8I	GTNNAC	2 cut(s)	124, 217
HpyAV	CCTTC	3 cut(s)	253, 266, 581
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	143, 197, 495
HpyF3I	CTNAG	2 cut(s)	354, 388
Hsp92II	CATG	1 cut(s)	449
LpnPI	CCDG	7 cut(s)	62, 189, 216, 239, 316, 530, 567
Lsp1109I	GCAGC	1 cut(s)	520
MaeIII	GTNAC	2 cut(s)	262, 383
MboII	GAAGA	7 cut(s)	36, 165, 352, 361, 364, 369, 478
MfeI	CAATTG	1 cut(s)	575
MhlI	GDGCHC	2 cut(s)	96, 303
MluCI	AATT	4 cut(s)	69, 165, 395, 575
MnlI	CCTC	3 cut(s)	107, 110, 462
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	3 cut(s)	393, 414, 423
MslI	CAYNNNNRTG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	445
NlaIII	CATG	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	41, 510
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	393, 414, 423
SatI	GCNGC	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	96, 303
SetI	ASST	3 cut(s)	99, 264, 492
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	69, 165, 395, 575
SspI	AATATT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	234, 445
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	69, 165, 395, 575
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	2 cut(s)	41, 510
Tru1I	TTAA	3 cut(s)	393, 414, 423
Tru9I	TTAA	3 cut(s)	393, 414, 423
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	49, 285
Van91I	CCANNNNNTGG	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	2 cut(s)	165, 395
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.