Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

19659118 .. 19661799

Gene Structure 2682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16360.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCGACAGATTATTAAACAACTACCCCAGGAAAGGCAGACAGCTTTATTTTCAGCCACCCAAACGAAGAAGGTTGAAGATCTTGCTAGATTGTCACTGAAAGATCCTATTTTGATTGATGTGGATGAAGGGAGGACTAAGGTCACTAATGAAGGGCTAAAACAAGGCTATGTTATTGTGCCCAGCGATAAGAGATTTATTCTCCTATATACTTTTCTGAAGACCACTCGTTCTAACAAAGTGATGGTCTTCTTCTCTTCTTGTAACTCAGTTAAATTCCACTCTGAACTTCTTAAATACATTAATGTGGAGTGCTTTGATATCCATGGAAAGCAAAAGCAACAGAAGAGGACAAAAACTTTCTTCGACTTCTGCAAAGCAGAGAAAGGAATCTTACTTTGTACTGATGTTGCTGCTCGTGGGCTGGATATTCCTGCCGTGGACTTGATTGTGCAGGATTTGATCCTCCGGATGATCCCAAGATTTGAATATATCCACCGTGTTGGTCGAACAGCTCGAGGAGAAGGTGGAAAAGGAAAGGCAATCCTTTTCCTCATTCCTGAAGAGATGCAGTTTATTCGCTATTTGATGGATGAAAAAGTCCCCGTTGAAGAACATAAATACAAGGAGAGTATGCTGAAAAATGTGCAGTCGCAACTGGTGGAGATGGTTCAGCGCAACGATTATCTCCGCAAATCAGCAAAAGAGGCATATAAATCTTATCTATTAGCGTATAATTCACACTCTATGAAGGACATCTTTAACGTCCAACGACTTGATATGCAGGCGGTTGCAGCTTCATTTTGCTTTCCGAGTCCCCCCAAGATGAGTCTGAACTTAAACAGCAACGCTTCAAAGTTCAGGAAGAAGATGGGCAAAGTAAGAGGAAGTCGAAACGGATTCAGCATGAGCAGTCCCTATGGAAGGCAAAAAGGTGGAGATGAAATTCGACAATTTGTAAGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

323

Amino Acids

37.19

Weight (kDa)

9.78

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	468
AciI	CCGC	2 cut(s)	691, 788
AclWI	GGATC	3 cut(s)	98, 457, 469
AcsI	RAATTY	2 cut(s)	275, 945
AcuI	CTGAAG	2 cut(s)	239, 582
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	33, 924
AgsI	TTSAA	4 cut(s)	77, 488, 611, 855
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	3 cut(s)	44, 515, 797
AluI	AGCT	3 cut(s)	44, 515, 797
AlwI	GGATC	3 cut(s)	98, 457, 469
Ama87I	CYCGRG	1 cut(s)	516
Aor13HI	TCCGGA	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	413, 794
ApoI	RAATTY	2 cut(s)	275, 945
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	678
AvaI	CYCGRG	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	183
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	2 cut(s)	227, 241
BbvI	GCAGC	2 cut(s)	400, 806
BccI	CCATC	4 cut(s)	238, 583, 661, 865
BceAI	ACGGC	1 cut(s)	422
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	29
BfaI	CTAG	1 cut(s)	87
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	414, 795
BlsI	GCNGC	2 cut(s)	415, 796
Bme1390I	CCNGG	1 cut(s)	29
BmeT110I	CYCGRG	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	558
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	2 cut(s)	227, 241
BsaJI	CCNNGG	3 cut(s)	27, 325, 438
BsaWI	WCCGGW	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 924
Bse1I	ACTGG	1 cut(s)	663
BseAI	TCCGGA	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	27, 325, 438
BseGI	GGATG	3 cut(s)	130, 477, 598
BseLI	CCNNNNNNNGG	2 cut(s)	33, 924
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	663
BseRI	GAGGAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	400, 806
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	2 cut(s)	473, 668
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	3 cut(s)	587, 801, 900
BslI	CCNNNNNNNGG	2 cut(s)	33, 924
BsmFI	GGGAC	3 cut(s)	587, 801, 900
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	79, 103, 462, 474
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	2 cut(s)	691, 788
BspCNI	CTCAG	1 cut(s)	281
BspEI	TCCGGA	1 cut(s)	468
BspPI	GGATC	3 cut(s)	98, 457, 469
BsrI	ACTGG	1 cut(s)	663
BssECI	CCNNGG	3 cut(s)	27, 325, 438
BssMI	GATC	4 cut(s)	79, 103, 462, 474
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	3 cut(s)	262, 341, 558
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	2 cut(s)	138, 268
BstDSI	CCRYGG	2 cut(s)	325, 438
BstENI	CCTNNNNNAGG	1 cut(s)	922
BstF5I	GGATG	3 cut(s)	130, 477, 598
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	4 cut(s)	82, 106, 465, 477
BstMBI	GATC	4 cut(s)	79, 103, 462, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	707, 794
BstNI	CCWGG	1 cut(s)	29
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	400, 806
BstV2I	GAAGAC	2 cut(s)	227, 241
BstX2I	RGATCY	2 cut(s)	79, 103
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	2 cut(s)	79, 103
BtgI	CCRYGG	2 cut(s)	325, 438
BtsCI	GGATG	3 cut(s)	130, 477, 598
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	786
CfoI	GCGC	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	2 cut(s)	326, 907
CviJI	RGCY	7 cut(s)	44, 56, 157, 168, 424, 515, 797
CviKI_1	RGCY	7 cut(s)	44, 56, 157, 168, 424, 515, 797
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	138, 268
DpnI	GATC	4 cut(s)	81, 105, 464, 476
DpnII	GATC	4 cut(s)	79, 103, 462, 474
Eam1104I	CTCTTC	3 cut(s)	262, 341, 558
EarI	CTCTTC	3 cut(s)	262, 341, 558
Eco130I	CCWWGG	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	239, 582
Eco88I	CYCGRG	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	922
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	329, 910
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	3 cut(s)	587, 801, 900
FatI	CATG	2 cut(s)	325, 906
Fnu4HI	GCNGC	2 cut(s)	414, 795
FokI	GGATG	3 cut(s)	137, 484, 605
Fsp4HI	GCNGC	2 cut(s)	414, 795
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	2 cut(s)	414, 795
GsaI	CCCAGC	1 cut(s)	186
HapII	CCGG	1 cut(s)	469
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	2 cut(s)	329, 910
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HinfI	GANTC	4 cut(s)	390, 814, 829, 900
HpaII	CCGG	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	4 cut(s)	219, 286, 813, 834
Hpy188III	TCNNGA	3 cut(s)	469, 560, 862
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	6 cut(s)	64, 122, 146, 518, 745, 918
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	6 cut(s)	375, 454, 571, 649, 784, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	707, 794
HpyF3I	CTNAG	2 cut(s)	138, 268
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	2 cut(s)	329, 910
HspAI	GCGC	1 cut(s)	676
Kpn2I	TCCGGA	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	79, 103, 462, 474
Lsp1109I	GCAGC	2 cut(s)	400, 806
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	3 cut(s)	93, 142, 263
MalI	GATC	4 cut(s)	81, 105, 464, 476
MboI	GATC	4 cut(s)	79, 103, 462, 474
MflI	RGATCY	2 cut(s)	79, 103
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	4 cut(s)	275, 736, 945, 953
MlyI	GAGTC	2 cut(s)	823, 838
MmeI	TCCRAC	1 cut(s)	793
MnlI	CCTC	7 cut(s)	126, 342, 476, 512, 563, 700, 878
MroI	TCCGGA	1 cut(s)	468
MseI	TTAA	6 cut(s)	15, 273, 294, 303, 762, 839
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	707, 794
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	4 cut(s)	79, 103, 462, 474
NlaIII	CATG	2 cut(s)	329, 910
NmuCI	GTSAC	2 cut(s)	93, 142
PaeR7I	CTCGAG	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	390, 900
PkrI	GCNGC	2 cut(s)	415, 796
PleI	GAGTC	2 cut(s)	822, 837
PpsI	GAGTC	2 cut(s)	822, 837
PshAI	GACNNNNGTC	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	516
PsuI	RGATCY	2 cut(s)	79, 103
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	6 cut(s)	15, 273, 294, 303, 762, 839
SatI	GCNGC	2 cut(s)	414, 795
Sau3AI	GATC	4 cut(s)	79, 103, 462, 474
SchI	GAGTC	2 cut(s)	823, 838
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	8 cut(s)	46, 75, 144, 517, 529, 768, 799, 937
SfaNI	GCATC	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	4 cut(s)	275, 736, 945, 953
SsiI	CCGC	2 cut(s)	691, 788
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	5 cut(s)	366, 508, 517, 892, 949
TasI	AATT	4 cut(s)	275, 736, 945, 953
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	390, 900
Tru1I	TTAA	6 cut(s)	15, 273, 294, 303, 762, 839
Tru9I	TTAA	6 cut(s)	15, 273, 294, 303, 762, 839
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	93, 142
TseI	GCWGC	2 cut(s)	413, 794
Tsp45I	GTSAC	2 cut(s)	93, 142
TspDTI	ATGAA	6 cut(s)	141, 165, 609, 764, 789, 957
TspGWI	ACGGA	1 cut(s)	912
TspRI	CASTG	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	922
XapI	RAATTY	2 cut(s)	275, 945
XhoI	CTCGAG	1 cut(s)	516
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.