Rh7BG066500

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
4415950 .. 4419563
3614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG066500.1

Sequence Viewer

Length: 1395 bp
ATGACTCAGATTCAATCCAGAGCAATCCCACCGCTGTTGATCGGAAGAGATGTGCTTGGAGCTGCAAGGACAGGGTCCGGGAAGACTCTTGCTTTTCTGGTGCCAGCTGTGGAGTTGTTATATAACGCAAGCTTTTCGCCTCGTAATGGAACTGGTGTTGTTGTCATTTGCCCAACTAGGGAACTTGCAATACAGTCCCATGCCGTGGCCAAGGACCTTCTCAAGAATCACTCGCAGACTCTTGGTTTGGTTATTGGTGGTTCGGCTAGAAGAGGAGAAGCAGAGCGTCTTGCAAAAGGAGTAAACCTATTGGTTGCAACTCCTGGTCGCCTTCTTGACCATCTGCAGAACACCAAGGGATTCGTATATAAGAACTTGAAGTGCCTCATCATTGATGAAGCTGACAGGATACTGGAAGCAAACTTTGAGGAAGAAATGAAACAAATCATTAACATTCTACCAAAGATAAATAATTTGAACAAACTGGGTAGTTGTGTAGTTGAAGATCTTGCTCGCTTGTCCTTCCAGACAACGCCTATGTATATAGATGTGGATGATGGGAGAACTAAGGTCACGAATGAAGGGCTGCAACAAGGCTATTGTCTTGTGCCAAGTGCCAAGAGATTTATTCTCCTATATTCCTTCCTGACGAAGAATCTATCAAAGAAAGTGATGGTCTTCTTCTCTTCTTGTAACTCAGTGAAATTCCACTCCGACCTTCTTAGATACATTAATGTGGATTGCTTTGATATCCATGGAAAGCAAAAGCAGCAGAAGAGGACAAGTACTTTTTTTGACTACTGCAAAGCAGAGAAAGGAATCTTACTTTGTACTGATGTTGCTGCTCGTGGCTTGGATATCCCCGCCGTGGACTGGATTGTGCAGTTTGATCCTCCAGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCACTACTTTTCCTCATTCCTGAAGAGTTGCAGTTTCTTCGCTATTTGAGGGAGGCAAAAGTCCCTGTTAAAGAGTATGAATTTAATGAGAAGAAGCTAAAAAATGTGCAATCTCAGCTGGAGAAGTTGGTTGCCAACAACTACCATCTGAACCGTGCAGCAAAAGATGCATATAGGTCTTATCTATTAGCATATAATTCACACTCTATGAAGGACATCTTTAACGTTCACCGACTCGATCTCCAGGCAGTTGCTTCTTCATTTTGCTTTTCTAATCCACCGAAGGTAAATTTAAACTTAGACAGCAGTGCATCAAAGTTCCGGAAGAACATGCGTAGAGTGGATGGAGTTCGACATGGAATCAATCCTAACAATCCTTATGGAAGGCAAAGAGGTGGAGATGATGACATGAGACAATTTGTGAGACATTAG

Protein Analysis

464

Amino Acids

52.28

Weight (kDa)

9.43

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 2 - 154 2.1e-40 DEAD/DEAH box helicase
ResIII PF04851 21 - 155 3e-07 Type III restriction enzyme, res subunit
Helicase_C PF00271 211 - 314 1e-23 Helicase conserved C-terminal domain
CTE_SPB4 PF13959 368 - 417 2.5e-17 ATP-dependent rRNA helicase SPB4-like, C-terminal extension
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 205
AccIII TCCGGA 1 cut(s) 1284
AciI CCGC 2 cut(s) 32, 864
AclI AACGTT 1 cut(s) 1188
AclWI GGATC 1 cut(s) 884
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 704, 1043, 1252
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 2 cut(s) 787, 832
AfiI CCNNNNNNNGG 5 cut(s) 146, 178, 205, 868, 873
AgsI TTSAA 4 cut(s) 14, 379, 478, 503
AjnI CCWGG 2 cut(s) 322, 1206
AluBI AGCT 7 cut(s) 62, 107, 132, 401, 938, 1060, 1081
AluI AGCT 7 cut(s) 62, 107, 132, 401, 938, 1060, 1081
Alw26I GTCTC 2 cut(s) 1369, 1381
AlwI GGATC 1 cut(s) 884
Aor13HI TCCGGA 1 cut(s) 1284
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 5 cut(s) 62, 586, 769, 842, 1121
ApoI RAATTY 3 cut(s) 704, 1043, 1252
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
AseI ATTAAT 1 cut(s) 732
AspS9I GGNCC 2 cut(s) 75, 214
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 1184
AvaII GGWCC 2 cut(s) 75, 214
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 100
BauI CACGAG 2 cut(s) 846, 939
BbsI GAAGAC 2 cut(s) 89, 670
BbvI GCAGC 5 cut(s) 49, 573, 781, 829, 1133
BccI CCATC 5 cut(s) 348, 551, 667, 1116, 1301
BceAI ACGGC 2 cut(s) 188, 851
BcgI CGANNNNNNTGC 4 cut(s) 117, 151, 983, 1017
BciT130I CCWGG 2 cut(s) 324, 1208
BciVI GTATCC 1 cut(s) 402
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 1369, 1381
BfaI CTAG 2 cut(s) 177, 267
BfmI CTRYAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 402
BglII AGATCT 1 cut(s) 505
BisI GCNGC 5 cut(s) 63, 587, 770, 843, 1122
BlsI GCNGC 5 cut(s) 64, 588, 771, 844, 1123
BmcAI AGTACT 1 cut(s) 787
Bme1390I CCNGG 3 cut(s) 79, 324, 1208
Bme18I GGWCC 2 cut(s) 75, 214
BmgT120I GGNCC 2 cut(s) 75, 214
BmiI GGNNCC 2 cut(s) 76, 102
BmrFI CCNGG 3 cut(s) 79, 324, 1208
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 1120, 1283
BmuI ACTGGG 1 cut(s) 494
BpiI GAAGAC 2 cut(s) 89, 670
BpmI CTGGAG 3 cut(s) 879, 1103, 1190
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 6 cut(s) 204, 210, 354, 754, 867, 906
BsaWI WCCGGW 1 cut(s) 1284
BsaXI ACNNNNNCTCC 2 cut(s) 1188, 1218
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 178, 205, 868, 873
Bse1I ACTGG 4 cut(s) 157, 417, 489, 878
BseAI TCCGGA 1 cut(s) 1284
BseBI CCWGG 2 cut(s) 324, 1208
BseDI CCNNGG 6 cut(s) 204, 210, 354, 754, 867, 906
BseGI GGATG 2 cut(s) 559, 1312
BseLI CCNNNNNNNGG 5 cut(s) 146, 178, 205, 868, 873
BseMII CTCAG 3 cut(s) 20, 711, 1091
BseNI ACTGG 4 cut(s) 157, 417, 489, 878
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 5 cut(s) 49, 573, 781, 829, 1133
BsgI GTGCAG 2 cut(s) 902, 1140
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 2 cut(s) 78, 1285
BslFI GGGAC 2 cut(s) 181, 1010
BslI CCNNNNNNNGG 5 cut(s) 146, 178, 205, 868, 873
BsmAI GTCTC 2 cut(s) 1369, 1381
BsmFI GGGAC 2 cut(s) 181, 1010
BsnI GGCC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 1284
Bsp143I GATC 4 cut(s) 39, 505, 889, 1201
Bsp19I CCATGG 1 cut(s) 754
BspACI CCGC 2 cut(s) 32, 864
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 3 cut(s) 19, 710, 1090
BspEI TCCGGA 1 cut(s) 1284
BspLI GGNNCC 2 cut(s) 76, 102
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 100
BsrI ACTGG 4 cut(s) 157, 417, 489, 878
BssECI CCNNGG 6 cut(s) 204, 210, 354, 754, 867, 906
BssMI GATC 4 cut(s) 39, 505, 889, 1201
BssSI CACGAG 2 cut(s) 846, 939
BssT1I CCWWGG 4 cut(s) 210, 354, 754, 906
Bst2BI CACGAG 2 cut(s) 846, 939
Bst2UI CCWGG 2 cut(s) 324, 1208
Bst4CI ACNGT 2 cut(s) 195, 1118
Bst6I CTCTTC 5 cut(s) 40, 265, 691, 770, 981
BstAPI GCANNNNNTGC 1 cut(s) 1130
BstC8I GCNNGC 3 cut(s) 105, 130, 514
BstDEI CTNAG 6 cut(s) 6, 567, 697, 722, 1077, 1261
BstDSI CCRYGG 3 cut(s) 204, 754, 867
BstF5I GGATG 2 cut(s) 559, 1312
BstKTI GATC 4 cut(s) 42, 508, 892, 1204
BstMAI GTCTC 2 cut(s) 1369, 1381
BstMBI GATC 4 cut(s) 39, 505, 889, 1201
BstMWI GCNNNNNNNGC 3 cut(s) 769, 1078, 1130
BstNI CCWGG 2 cut(s) 324, 1208
BstNSI RCATGY 1 cut(s) 1297
BstSCI CCNGG 3 cut(s) 77, 322, 1206
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 5 cut(s) 49, 573, 781, 829, 1133
BstV2I GAAGAC 2 cut(s) 89, 670
BstX2I RGATCY 1 cut(s) 505
BstXI CCANNNNNNTGG 1 cut(s) 926
BstYI RGATCY 1 cut(s) 505
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 3 cut(s) 204, 754, 867
BtsCI GGATG 2 cut(s) 559, 1312
BtsI GCAGTG 1 cut(s) 1276
BtsIMutI CAGTG 2 cut(s) 705, 1276
Cac8I GCNNGC 3 cut(s) 105, 130, 514
Cfr13I GGNCC 2 cut(s) 75, 214
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 786, 831
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 5 cut(s) 200, 755, 1294, 1319, 1372
CviQI GTAC 2 cut(s) 786, 831
DdeI CTNAG 6 cut(s) 6, 567, 697, 722, 1077, 1261
DpnI GATC 4 cut(s) 41, 507, 891, 1203
DpnII GATC 4 cut(s) 39, 505, 889, 1201
DraI TTTAAA 1 cut(s) 1257
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 5 cut(s) 40, 265, 691, 770, 981
EarI CTCTTC 5 cut(s) 40, 265, 691, 770, 981
Eco130I CCWWGG 4 cut(s) 210, 354, 754, 906
Eco32I GATATC 2 cut(s) 751, 859
Eco47I GGWCC 2 cut(s) 75, 214
Eco57I CTGAAG 1 cut(s) 1005
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 322, 1206
EcoRV GATATC 2 cut(s) 751, 859
EcoT14I CCWWGG 4 cut(s) 210, 354, 754, 906
EcoT22I ATGCAT 1 cut(s) 1135
ErhI CCWWGG 4 cut(s) 210, 354, 754, 906
FaeI CATG 5 cut(s) 203, 758, 1297, 1322, 1375
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 2 cut(s) 181, 1010
FatI CATG 5 cut(s) 199, 754, 1293, 1318, 1371
FauI CCCGC 1 cut(s) 871
Fnu4HI GCNGC 5 cut(s) 63, 587, 770, 843, 1122
FokI GGATG 2 cut(s) 566, 1319
Fsp4HI GCNGC 5 cut(s) 63, 587, 770, 843, 1122
FspBI CTAG 2 cut(s) 177, 267
GluI GCNGC 5 cut(s) 63, 587, 770, 843, 1122
GsuI CTGGAG 3 cut(s) 879, 1103, 1190
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 78, 1285
HgaI GACGC 1 cut(s) 275
Hin1II CATG 5 cut(s) 203, 758, 1297, 1322, 1375
HindIII AAGCTT 1 cut(s) 130
HpaII CCGG 2 cut(s) 78, 1285
HphI GGTGA 1 cut(s) 1184
Hpy166II GTNNAC 3 cut(s) 304, 871, 1192
Hpy188I TCNGA 4 cut(s) 9, 44, 715, 1113
Hpy188III TCNNGA 9 cut(s) 18, 223, 335, 526, 574, 646, 896, 983, 1285
Hpy8I GTNNAC 3 cut(s) 304, 871, 1192
HpyCH4III ACNGT 2 cut(s) 195, 1118
HpyCH4IV ACGT 1 cut(s) 1188
HpyF10VI GCNNNNNNNGC 3 cut(s) 769, 1078, 1130
HpyF3I CTNAG 6 cut(s) 6, 567, 697, 722, 1077, 1261
HpySE526I ACGT 1 cut(s) 1188
Hsp92II CATG 5 cut(s) 203, 758, 1297, 1322, 1375
Kpn2I TCCGGA 1 cut(s) 1284
Kzo9I GATC 4 cut(s) 39, 505, 889, 1201
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 5 cut(s) 49, 573, 781, 829, 1133
LweI GCATC 2 cut(s) 1120, 1283
MaeI CTAG 2 cut(s) 177, 267
MaeII ACGT 1 cut(s) 1188
MaeIII GTNAC 2 cut(s) 571, 692
MalI GATC 4 cut(s) 41, 507, 891, 1203
MboI GATC 4 cut(s) 39, 505, 889, 1201
MflI RGATCY 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 6 cut(s) 472, 704, 1043, 1159, 1252, 1379
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 3 cut(s) 79, 232, 1191
MmeI TCCRAC 1 cut(s) 738
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 1 cut(s) 1135
MroI TCCGGA 1 cut(s) 1284
MscI TGGCCA 1 cut(s) 209
MseI TTAA 6 cut(s) 450, 732, 1032, 1047, 1185, 1256
MslI CAYNNNNRTG 1 cut(s) 734
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 3 cut(s) 34, 107, 1081
MspI CCGG 2 cut(s) 78, 1285
MspR9I CCNGG 3 cut(s) 79, 324, 1208
MvaI CCWGG 2 cut(s) 324, 1208
MwoI GCNNNNNNNGC 3 cut(s) 769, 1078, 1130
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 754
NdeII GATC 4 cut(s) 39, 505, 889, 1201
NlaIII CATG 5 cut(s) 203, 758, 1297, 1322, 1375
NlaIV GGNNCC 2 cut(s) 76, 102
NmuCI GTSAC 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 1135
NspI RCATGY 1 cut(s) 1297
PcsI WCGNNNNNNNCGW 1 cut(s) 937
PfeI GAWTC 6 cut(s) 10, 226, 360, 655, 819, 1323
PflFI GACNNNGTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 5 cut(s) 64, 588, 771, 844, 1123
PleI GAGTC 3 cut(s) 79, 232, 1191
PpsI GAGTC 3 cut(s) 79, 232, 1191
PpuMI RGGWCCY 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 732
Psp1406I AACGTT 1 cut(s) 1188
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 322, 1206
PspGI CCWGG 2 cut(s) 322, 1206
PspN4I GGNNCC 2 cut(s) 76, 102
PspPI GGNCC 2 cut(s) 75, 214
PspPPI RGGWCCY 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PstI CTGCAG 1 cut(s) 348
PsuI RGATCY 1 cut(s) 505
PsyI GACNNNGTC 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 107, 1081
RsaI GTAC 2 cut(s) 787, 832
RsaNI GTAC 2 cut(s) 786, 831
RseI CAYNNNNRTG 1 cut(s) 734
SaqAI TTAA 6 cut(s) 450, 732, 1032, 1047, 1185, 1256
SatI GCNGC 5 cut(s) 63, 587, 770, 843, 1122
Sau3AI GATC 4 cut(s) 39, 505, 889, 1201
Sau96I GGNCC 2 cut(s) 75, 214
ScaI AGTACT 1 cut(s) 787
SchI GAGTC 3 cut(s) 79, 232, 1191
ScrFI CCNGG 3 cut(s) 79, 324, 1208
SfaNI GCATC 2 cut(s) 1120, 1283
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 2 cut(s) 75, 214
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 6 cut(s) 472, 704, 1043, 1159, 1252, 1379
SsiI CCGC 2 cut(s) 32, 864
SspMI CTAG 2 cut(s) 177, 267
StyD4I CCNGG 3 cut(s) 77, 322, 1206
StyI CCWWGG 4 cut(s) 210, 354, 754, 906
TaaI ACNGT 2 cut(s) 195, 1118
TaiI ACGT 1 cut(s) 1191
TaqI TCGA 3 cut(s) 931, 1200, 1315
TasI AATT 6 cut(s) 472, 704, 1043, 1159, 1252, 1379
TatI WGTACW 2 cut(s) 785, 830
TfiI GAWTC 6 cut(s) 10, 226, 360, 655, 819, 1323
Tru1I TTAA 6 cut(s) 450, 732, 1032, 1047, 1185, 1256
Tru9I TTAA 6 cut(s) 450, 732, 1032, 1047, 1185, 1256
TscAI CASTG 2 cut(s) 705, 1276
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 5 cut(s) 62, 586, 769, 842, 1121
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 7 cut(s) 411, 452, 594, 915, 1056, 1187, 1212
TspRI CASTG 2 cut(s) 705, 1276
Tth111I GACNNNGTC 1 cut(s) 73
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 75, 214
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 3 cut(s) 704, 1043, 1252
XceI RCATGY 1 cut(s) 1297
XspI CTAG 2 cut(s) 177, 267
ZrmI AGTACT 1 cut(s) 787
Zsp2I ATGCAT 1 cut(s) 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.